Wall clock time and date at job start Tue Mar 31 2020 13:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35981 * 116.99942 * 2 1 4 4 C 1.38719 * 120.07044 * 0.02562 * 3 2 1 5 5 C 1.37947 * 119.89904 * 179.90308 * 4 3 2 6 6 C 1.39133 * 120.29319 * 359.96449 * 5 4 3 7 7 C 1.38347 * 119.78275 * 0.17753 * 6 5 4 8 8 C 1.38499 * 119.88634 * 0.05486 * 7 6 5 9 9 C 1.50786 * 121.40784 * 179.77562 * 7 6 5 10 10 H 1.08997 * 109.43318 * 257.66460 * 9 7 6 11 11 O 1.45203 * 109.43162 * 137.80468 * 9 7 6 12 12 C 1.34225 * 117.00531 * 89.99866 * 11 9 7 13 13 O 1.20829 * 119.99743 * 359.97438 * 12 11 9 14 14 C 1.50690 * 120.00329 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47365 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00270 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00016 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00133 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99715 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47329 * 120.00132 * 20 18 16 23 23 H 1.48501 * 109.47454 * 239.99750 * 20 18 16 24 24 C 1.53058 * 109.69117 * 17.73400 * 9 7 6 25 25 C 1.53408 * 108.29519 * 311.78582 * 24 9 7 26 26 O 1.35957 * 118.43007 * 180.27948 * 6 5 4 27 27 H 1.09006 * 109.46932 * 59.99930 * 1 2 3 28 28 H 1.08993 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46775 * 300.00155 * 1 2 3 30 30 H 1.07998 * 120.04792 * 359.91574 * 4 3 2 31 31 H 1.07998 * 119.85054 * 179.97438 * 5 4 3 32 32 H 1.07990 * 119.86603 * 179.88263 * 8 7 6 33 33 H 1.09005 * 109.47606 * 300.00222 * 14 12 11 34 34 H 1.09003 * 109.47370 * 60.00343 * 14 12 11 35 35 H 0.97004 * 119.99644 * 180.02562 * 19 18 16 36 36 H 1.09009 * 109.70328 * 71.48694 * 24 9 7 37 37 H 1.09001 * 109.70068 * 192.08439 * 24 9 7 38 38 H 1.09005 * 109.68396 * 184.47336 * 25 24 9 39 39 H 1.09003 * 109.68380 * 304.99819 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2922 2.3759 0.0005 5 6 1.9222 3.6032 0.0026 6 6 3.3114 3.6789 0.0048 7 6 4.0630 2.5174 0.0013 8 6 3.4298 1.2857 -0.0056 9 6 5.5704 2.5568 -0.0015 10 1 5.9367 2.3486 -1.0067 11 8 6.0815 1.5537 0.9155 12 6 6.3153 0.3312 0.4129 13 8 6.0996 0.1067 -0.7546 14 6 6.8469 -0.7611 1.3046 15 16 7.0548 -2.2790 0.3409 16 6 7.6694 -3.3550 1.5935 17 1 7.8058 -2.9891 2.6004 18 6 7.9782 -4.6729 1.2862 19 7 7.8124 -5.1186 0.0588 20 14 8.6291 -5.8137 2.6144 21 1 8.7230 -5.0750 3.8992 22 1 7.7061 -6.9663 2.7730 23 1 9.9751 -6.3073 2.2271 24 6 6.0509 3.9416 0.4391 25 6 5.2700 4.9972 -0.3543 26 8 3.8926 4.9080 0.0126 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2136 2.3216 -0.0004 31 1 1.3343 4.5091 0.0026 32 1 4.0167 0.3793 -0.0103 33 1 7.8091 -0.4575 1.7170 34 1 6.1436 -0.9409 2.1177 35 1 8.0278 -6.0398 -0.1558 36 1 5.8664 4.0726 1.5054 37 1 7.1168 4.0428 0.2350 38 1 5.6498 5.9908 -0.1161 39 1 5.3791 4.8088 -1.4223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274139082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:59 Heat of formation + Delta-G solvation = -130.772850 kcal Electronic energy + Delta-G solvation = -24845.812476 eV Core-core repulsion = 21038.822509 eV Total energy + Delta-G solvation = -3806.989967 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27261 -39.87891 -39.30219 -36.55676 -36.31158 -33.44256 -32.48342 -30.83005 -30.13562 -29.54015 -27.28666 -25.73973 -25.41609 -23.54981 -22.74720 -21.19055 -20.24633 -18.26769 -18.05672 -17.70615 -17.35128 -16.90323 -16.07577 -15.88038 -15.73394 -15.31838 -15.14343 -14.84517 -14.47258 -14.19615 -13.74362 -13.54324 -13.45602 -13.18127 -12.90701 -12.70351 -12.60702 -12.52722 -12.00143 -11.78954 -11.56432 -11.24826 -11.09437 -11.08460 -11.06638 -10.80000 -10.52233 -10.32511 -10.03842 -9.88699 -9.12105 -9.04490 -8.35717 -7.84141 -6.59946 -6.27249 -3.99692 1.02591 1.32825 2.56711 2.58143 3.05289 3.19965 3.23209 3.25669 3.29483 3.45594 3.65418 4.14644 4.32002 4.35029 4.49251 4.62652 4.74148 4.84244 4.95918 5.02097 5.03481 5.08836 5.20276 5.21964 5.24532 5.34762 5.37028 5.49702 5.58600 5.71233 5.76233 5.76926 5.89390 6.06922 6.19564 6.25608 6.38790 6.62537 7.14102 7.39495 7.56032 8.09507 8.30828 9.18513 10.80306 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003350 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.756218 B = 8357.161070 C = 9777.702621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.100 3.900 4 C -0.170 4.170 5 C -0.113 4.113 6 C 0.105 3.895 7 C -0.140 4.140 8 C -0.099 4.099 9 C 0.134 3.866 10 H 0.101 0.899 11 O -0.346 6.346 12 C 0.477 3.523 13 O -0.482 6.482 14 C -0.130 4.130 15 S -0.056 6.056 16 C -0.536 4.536 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.921 3.079 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.156 4.156 25 C 0.067 3.933 26 O -0.316 6.316 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.269 0.731 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 19.792 0.480 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.055 3.945 4 C -0.188 4.188 5 C -0.132 4.132 6 C 0.061 3.939 7 C -0.141 4.141 8 C -0.117 4.117 9 C 0.078 3.922 10 H 0.119 0.881 11 O -0.264 6.264 12 C 0.318 3.682 13 O -0.367 6.367 14 C -0.278 4.278 15 S 0.171 5.829 16 C -0.684 4.684 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.193 4.193 25 C -0.008 4.008 26 O -0.231 6.231 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.330 19.382 -1.064 22.476 hybrid contribution 0.547 -0.599 1.969 2.130 sum -10.783 18.783 0.905 21.677 Atomic orbital electron populations 1.23055 0.78623 1.04103 1.00966 1.86184 1.21087 1.26262 1.88895 1.18808 0.92012 0.84493 0.99201 1.21046 1.00050 0.91399 1.06350 1.20287 0.91230 0.97966 1.03705 1.18451 0.91790 0.83197 1.00499 1.19806 0.95308 0.92507 1.06463 1.20378 0.91929 0.98114 1.01324 1.21275 0.88748 0.87200 0.94965 0.88104 1.86658 1.76195 1.20805 1.42731 1.23418 0.74336 0.82238 0.88172 1.90685 1.47239 1.80973 1.17810 1.23328 1.04332 0.97584 1.02517 1.85424 1.85433 0.98006 1.14070 1.22886 1.50636 0.97770 0.97090 0.90533 1.24996 0.95016 0.97168 0.96296 1.70022 1.45292 1.16674 1.18217 0.86075 0.78519 0.79922 0.80754 1.19494 1.20496 1.20508 1.22314 1.01914 0.92156 1.02932 1.22960 0.78781 1.00176 0.98868 1.85984 1.26255 1.26311 1.84513 0.92815 0.88113 0.92803 0.84700 0.84738 0.84347 0.87826 0.87832 0.92127 0.88885 0.88584 0.86582 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.57 10.50 -19.68 -0.21 -4.78 16 3 C 0.10 1.47 6.68 -39.29 -0.26 1.21 16 4 C -0.17 -1.97 9.03 -39.51 -0.36 -2.33 16 5 C -0.11 -1.30 9.93 -39.36 -0.39 -1.69 16 6 C 0.11 1.37 6.47 -39.21 -0.25 1.11 16 7 C -0.14 -2.06 5.58 -104.44 -0.58 -2.64 16 8 C -0.10 -1.64 9.07 -39.37 -0.36 -1.99 16 9 C 0.13 1.87 2.69 -27.81 -0.07 1.79 16 10 H 0.10 1.46 7.15 -51.93 -0.37 1.09 16 11 O -0.35 -5.68 9.65 -39.24 -0.38 -6.05 16 12 C 0.48 9.21 6.42 36.00 0.23 9.44 16 13 O -0.48 -10.44 13.81 -18.75 -0.26 -10.70 16 14 C -0.13 -2.67 6.27 36.00 0.23 -2.45 16 15 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 17 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 20 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.16 -1.54 5.85 -26.49 -0.16 -1.70 16 25 C 0.07 0.57 7.03 37.37 0.26 0.83 16 26 O -0.32 -3.59 10.27 -19.60 -0.20 -3.79 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.14 1.15 6.31 -52.49 -0.33 0.82 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 2.65 5.16 -52.49 -0.27 2.38 16 33 H 0.10 1.96 8.14 -51.91 -0.42 1.54 16 34 H 0.10 2.01 8.14 -51.91 -0.42 1.59 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -34.07 343.85 -7.59 -41.66 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.70 Total: 0.98 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.52 Total: -9.94 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.73 Total: -25.05 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.05 Total: -25.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.07 -7.59 -41.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274139082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.114 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds