Wall clock time and date at job start Tue Mar 31 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35981 * 116.99942 * 2 1 4 4 C 1.38719 * 120.07044 * 0.02562 * 3 2 1 5 5 C 1.37947 * 119.89904 * 179.90308 * 4 3 2 6 6 C 1.39133 * 120.29319 * 359.96449 * 5 4 3 7 7 C 1.38347 * 119.78275 * 0.17753 * 6 5 4 8 8 C 1.38499 * 119.88634 * 0.05486 * 7 6 5 9 9 C 1.50786 * 121.40784 * 179.77562 * 7 6 5 10 10 H 1.08997 * 109.43318 * 257.66460 * 9 7 6 11 11 O 1.45203 * 109.43162 * 137.80468 * 9 7 6 12 12 C 1.34225 * 117.00531 * 89.99866 * 11 9 7 13 13 O 1.20829 * 119.99743 * 359.97438 * 12 11 9 14 14 C 1.50690 * 120.00329 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47365 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00270 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00016 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00133 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99715 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47329 * 120.00132 * 20 18 16 23 23 H 1.48501 * 109.47454 * 239.99750 * 20 18 16 24 24 C 1.53058 * 109.69117 * 17.73400 * 9 7 6 25 25 C 1.53408 * 108.29519 * 311.78582 * 24 9 7 26 26 O 1.35957 * 118.43007 * 180.27948 * 6 5 4 27 27 H 1.09006 * 109.46932 * 59.99930 * 1 2 3 28 28 H 1.08993 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46775 * 300.00155 * 1 2 3 30 30 H 1.07998 * 120.04792 * 359.91574 * 4 3 2 31 31 H 1.07998 * 119.85054 * 179.97438 * 5 4 3 32 32 H 1.07990 * 119.86603 * 179.88263 * 8 7 6 33 33 H 1.09005 * 109.47606 * 300.00222 * 14 12 11 34 34 H 1.09003 * 109.47370 * 60.00343 * 14 12 11 35 35 H 0.97004 * 119.99644 * 180.02562 * 19 18 16 36 36 H 1.09009 * 109.70328 * 71.48694 * 24 9 7 37 37 H 1.09001 * 109.70068 * 192.08439 * 24 9 7 38 38 H 1.09005 * 109.68396 * 184.47336 * 25 24 9 39 39 H 1.09003 * 109.68380 * 304.99819 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2922 2.3759 0.0005 5 6 1.9222 3.6032 0.0026 6 6 3.3114 3.6789 0.0048 7 6 4.0630 2.5174 0.0013 8 6 3.4298 1.2857 -0.0056 9 6 5.5704 2.5568 -0.0015 10 1 5.9367 2.3486 -1.0067 11 8 6.0815 1.5537 0.9155 12 6 6.3153 0.3312 0.4129 13 8 6.0996 0.1067 -0.7546 14 6 6.8469 -0.7611 1.3046 15 16 7.0548 -2.2790 0.3409 16 6 7.6694 -3.3550 1.5935 17 1 7.8058 -2.9891 2.6004 18 6 7.9782 -4.6729 1.2862 19 7 7.8124 -5.1186 0.0588 20 14 8.6291 -5.8137 2.6144 21 1 8.7230 -5.0750 3.8992 22 1 7.7061 -6.9663 2.7730 23 1 9.9751 -6.3073 2.2271 24 6 6.0509 3.9416 0.4391 25 6 5.2700 4.9972 -0.3543 26 8 3.8926 4.9080 0.0126 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2136 2.3216 -0.0004 31 1 1.3343 4.5091 0.0026 32 1 4.0167 0.3793 -0.0103 33 1 7.8091 -0.4575 1.7170 34 1 6.1436 -0.9409 2.1177 35 1 8.0278 -6.0398 -0.1558 36 1 5.8664 4.0726 1.5054 37 1 7.1168 4.0428 0.2350 38 1 5.6498 5.9908 -0.1161 39 1 5.3791 4.8088 -1.4223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274139082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:58 Heat of formation + Delta-G solvation = -152.389534 kcal Electronic energy + Delta-G solvation = -24846.749846 eV Core-core repulsion = 21038.822509 eV Total energy + Delta-G solvation = -3807.927336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38397 -41.16680 -40.25830 -37.82678 -37.39859 -34.63119 -34.48619 -31.75644 -31.43998 -30.82629 -28.09191 -27.75520 -26.56100 -24.44354 -23.79850 -22.62655 -21.19381 -19.97714 -19.31895 -18.86510 -18.63457 -17.96080 -17.31776 -17.21276 -16.91236 -16.71343 -16.33690 -16.11665 -16.03329 -15.52937 -14.89136 -14.71284 -14.49620 -14.36281 -14.16066 -14.09398 -13.89992 -13.44508 -13.21366 -13.06617 -12.93201 -12.87903 -12.68565 -12.41747 -12.20587 -11.99187 -11.78192 -11.63958 -11.48444 -11.28906 -11.19096 -10.40899 -10.08345 -8.82811 -8.75998 -8.39307 -6.19369 -0.00166 0.30663 0.97736 1.03149 1.39278 1.40965 1.54898 1.79113 2.21652 2.23606 2.37491 2.59397 2.95874 3.22352 3.32924 3.45713 3.53522 3.63385 3.80838 3.98349 4.09676 4.10473 4.18096 4.29471 4.33224 4.37230 4.38935 4.43879 4.58567 4.67766 4.74093 4.82071 4.84156 4.88626 5.19258 5.20904 5.25284 5.39357 5.44665 6.16456 6.25509 6.46093 6.58794 7.02379 8.70330 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003350 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.756218 B = 8357.161070 C = 9777.702621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.347 6.347 3 C 0.084 3.916 4 C -0.157 4.157 5 C -0.106 4.106 6 C 0.105 3.895 7 C -0.156 4.156 8 C -0.137 4.137 9 C 0.125 3.875 10 H 0.088 0.912 11 O -0.339 6.339 12 C 0.486 3.514 13 O -0.512 6.512 14 C -0.110 4.110 15 S -0.133 6.133 16 C -0.549 4.549 17 H 0.085 0.915 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 1.001 2.999 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.148 4.148 25 C 0.065 3.935 26 O -0.317 6.317 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.273 0.727 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.156 0.844 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 22.245 2.023 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.262 6.262 3 C 0.039 3.961 4 C -0.175 4.175 5 C -0.125 4.125 6 C 0.060 3.940 7 C -0.157 4.157 8 C -0.156 4.156 9 C 0.070 3.930 10 H 0.106 0.894 11 O -0.256 6.256 12 C 0.329 3.671 13 O -0.399 6.399 14 C -0.258 4.258 15 S 0.094 5.906 16 C -0.697 4.697 17 H 0.103 0.897 18 C -0.188 4.188 19 N -0.546 5.546 20 Si 0.822 3.178 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.186 4.186 25 C -0.010 4.010 26 O -0.231 6.231 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.188 0.812 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.174 0.826 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.148 21.870 0.486 25.022 hybrid contribution 0.697 -1.211 1.454 2.017 sum -11.451 20.659 1.940 23.700 Atomic orbital electron populations 1.23385 0.76046 1.05517 1.02737 1.86135 1.23963 1.26972 1.89100 1.18989 0.91689 0.85647 0.99790 1.21394 1.01586 0.90166 1.04344 1.20749 0.90916 0.99106 1.01695 1.18608 0.92489 0.83107 0.99839 1.19875 0.95598 0.92702 1.07524 1.20287 0.93044 0.97527 1.04699 1.21687 0.88941 0.88268 0.94124 0.89378 1.86606 1.75803 1.19988 1.43216 1.23040 0.73755 0.82976 0.87335 1.90672 1.48566 1.81637 1.19068 1.23107 1.05928 0.95061 1.01711 1.85534 1.85802 1.02151 1.17072 1.23227 1.50731 0.98387 0.97337 0.89682 1.26120 0.94947 0.98907 0.98840 1.70173 1.46442 1.17326 1.20648 0.84878 0.77886 0.77326 0.77694 1.18082 1.19860 1.19676 1.22392 1.03443 0.89601 1.03115 1.23302 0.77133 1.01460 0.99062 1.85990 1.27723 1.25062 1.84361 0.90985 0.87123 0.90884 0.81179 0.81380 0.88229 0.85697 0.86660 0.91805 0.88855 0.86410 0.82617 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.35 -10.55 10.50 -93.33 -0.98 -11.53 16 3 C 0.08 2.51 6.68 22.46 0.15 2.66 16 4 C -0.16 -3.32 9.03 22.32 0.20 -3.12 16 5 C -0.11 -2.15 9.93 22.42 0.22 -1.93 16 6 C 0.10 2.54 6.47 22.51 0.15 2.69 16 7 C -0.16 -4.65 5.58 -19.75 -0.11 -4.76 16 8 C -0.14 -4.79 9.07 22.40 0.20 -4.59 16 9 C 0.12 3.52 2.69 29.89 0.08 3.60 16 10 H 0.09 2.68 7.15 -2.39 -0.02 2.66 16 11 O -0.34 -11.37 9.65 -51.37 -0.50 -11.87 16 12 C 0.49 19.63 6.42 71.23 0.46 20.09 16 13 O -0.51 -23.67 13.81 21.96 0.30 -23.37 16 14 C -0.11 -4.64 6.27 71.23 0.45 -4.20 16 15 S -0.13 -7.39 20.57 -56.49 -1.16 -8.55 16 16 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 17 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 18 C 0.02 0.96 5.49 84.86 0.47 1.43 16 19 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 20 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.15 -2.65 5.85 30.75 0.18 -2.47 16 25 C 0.06 0.89 7.03 72.12 0.51 1.40 16 26 O -0.32 -6.27 10.27 -93.07 -0.96 -7.23 16 27 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 30 H 0.17 2.29 6.31 -2.91 -0.02 2.27 16 31 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.10 4.21 5.16 -2.92 -0.02 4.19 16 33 H 0.12 4.73 8.14 -2.39 -0.02 4.71 16 34 H 0.12 4.59 8.14 -2.39 -0.02 4.57 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.16 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.50 343.85 4.81 -73.69 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.08 Total: 17.09 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.71 Total: -18.59 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.29 Total: -55.26 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.13 Total: -53.99 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.16 Total: -8.55 kcal Total: -78.50 4.81 -73.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274139082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.697 kcal (2) G-P(sol) polarization free energy of solvation -78.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds