Wall clock time and date at job start Tue Mar 31 2020 13:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38447 * 119.83457 * 2 1 4 4 C 1.37852 * 120.22683 * 179.97438 * 3 2 1 5 5 C 1.39665 * 119.90369 * 0.30475 * 4 3 2 6 6 C 1.47696 * 120.15927 * 179.70282 * 5 4 3 7 7 O 1.21578 * 119.99934 * 235.01736 * 6 5 4 8 8 N 1.34776 * 120.00490 * 55.01741 * 6 5 4 9 9 C 1.46496 * 120.00320 * 185.55788 * 8 6 5 10 10 C 1.50697 * 109.47343 * 90.00096 * 9 8 6 11 11 H 1.08005 * 119.99556 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00214 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00517 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00082 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46961 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47151 * 120.00010 * 14 12 10 17 17 H 1.48499 * 109.47183 * 239.99842 * 14 12 10 18 18 C 1.46495 * 119.99638 * 5.56146 * 8 6 5 19 19 C 1.53002 * 109.47797 * 94.96808 * 18 8 6 20 20 C 1.47198 * 109.47619 * 179.97438 * 19 18 8 21 21 N 6.14929 * 118.09530 * 74.56049 * 2 1 3 22 22 C 1.39795 * 119.67916 * 359.46108 * 5 4 3 23 23 F 1.35097 * 120.11645 * 180.27539 * 22 5 4 24 24 C 1.38293 * 119.83454 * 180.02562 * 2 1 3 25 25 Cl 1.73602 * 119.95716 * 359.97438 * 24 2 1 26 26 H 1.09010 * 109.47019 * 89.99958 * 1 2 3 27 27 H 1.08994 * 109.47517 * 209.99820 * 1 2 3 28 28 H 1.09006 * 109.47356 * 330.00152 * 1 2 3 29 29 H 1.07999 * 119.88687 * 0.02600 * 3 2 1 30 30 H 1.08005 * 120.04705 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47096 * 210.00305 * 9 8 6 32 32 H 1.09007 * 109.46901 * 329.99735 * 9 8 6 33 33 H 0.96992 * 120.00761 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47125 * 214.96788 * 18 8 6 35 35 H 1.08998 * 109.47316 * 334.96378 * 18 8 6 36 36 H 1.09007 * 109.46446 * 300.00161 * 19 18 8 37 37 H 1.08998 * 109.47038 * 59.99400 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2104 0.0005 5 6 4.2788 0.0045 -0.0054 6 6 5.7558 0.0081 -0.0115 7 8 6.3615 -0.5920 -0.8781 8 7 6.4321 0.6765 0.9437 9 6 7.8914 0.7825 0.8699 10 6 8.2666 2.0185 0.0937 11 1 7.4952 2.6606 -0.3051 12 6 9.5947 2.3290 -0.1081 13 7 10.5341 1.5469 0.3771 14 14 10.0598 3.8608 -1.0709 15 1 8.8271 4.5650 -1.5064 16 1 10.8666 4.7613 -0.2087 17 1 10.8555 3.4734 -2.2633 18 6 5.7079 1.2969 2.0558 19 6 5.6904 0.3406 3.2499 20 6 4.9632 0.9643 4.3675 21 7 4.4030 1.4442 5.2289 22 6 3.5794 -1.2059 -0.0004 23 9 4.2520 -2.3775 -0.0004 24 6 2.1950 -1.1996 -0.0005 25 17 1.3215 -2.6999 -0.0005 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6512 2.1336 0.0004 30 1 4.1087 2.1490 0.0009 31 1 8.3023 0.8474 1.8774 32 1 8.2947 -0.0976 0.3689 33 1 11.4684 1.7651 0.2347 34 1 6.2047 2.2244 2.3404 35 1 4.6848 1.5125 1.7479 36 1 5.1936 -0.5870 2.9652 37 1 6.7135 0.1250 3.5578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279260928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:21 Heat of formation + Delta-G solvation = -33.754760 kcal Electronic energy + Delta-G solvation = -24825.547468 eV Core-core repulsion = 20929.553261 eV Total energy + Delta-G solvation = -3895.994207 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.97788 -40.15674 -38.61382 -36.90831 -36.69668 -35.34919 -33.28707 -32.66728 -30.91068 -30.73592 -28.42080 -26.84593 -24.22772 -23.52618 -22.99887 -21.97286 -19.39810 -17.76191 -17.32575 -16.98966 -16.88463 -16.44204 -16.16946 -15.59292 -15.19320 -14.79652 -14.62607 -14.31359 -14.12655 -14.06649 -13.79350 -13.57865 -13.02970 -12.75927 -12.53273 -12.45685 -12.40161 -12.25565 -12.17659 -11.92432 -11.76184 -11.49166 -11.33356 -11.11707 -10.99666 -10.87643 -10.69112 -10.26611 -9.77431 -9.35902 -8.92887 -8.88731 -8.52856 -7.96020 -6.14527 -4.20096 0.59642 0.76774 1.75712 2.70916 2.82651 2.89488 3.24556 3.32606 3.33915 3.34806 3.52838 3.83567 4.11095 4.35354 4.41641 4.52397 4.73151 4.79294 5.01279 5.11564 5.13544 5.17306 5.21557 5.27059 5.44073 5.56424 5.61345 5.74051 5.78732 5.90829 6.00215 6.01690 6.38489 6.83144 7.25776 7.33532 7.57163 7.80558 8.07373 8.09930 8.65861 8.85909 9.45780 10.93648 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.003996 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.508521 B = 7005.402834 C = 7665.321725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 C -0.124 4.124 4 C -0.054 4.054 5 C -0.145 4.145 6 C 0.554 3.446 7 O -0.513 6.513 8 N -0.586 5.586 9 C 0.243 3.757 10 C -0.532 4.532 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.108 3.892 19 C -0.050 4.050 20 C 0.219 3.781 21 N -0.444 5.444 22 C 0.154 3.846 23 F -0.112 7.112 24 C -0.084 4.084 25 Cl -0.048 7.048 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 -2.661 1.673 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.039 4.039 3 C -0.143 4.143 4 C -0.073 4.073 5 C -0.150 4.150 6 C 0.339 3.661 7 O -0.388 6.388 8 N -0.316 5.316 9 C 0.125 3.875 10 C -0.571 4.571 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.018 4.018 19 C -0.092 4.092 20 C -0.099 4.099 21 N -0.121 5.121 22 C 0.133 3.867 23 F -0.090 7.090 24 C -0.112 4.112 25 Cl -0.018 7.018 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.335 -2.479 2.507 19.654 hybrid contribution 0.713 0.292 -0.850 1.147 sum -18.622 -2.186 1.657 18.823 Atomic orbital electron populations 1.20938 0.89475 1.03946 1.03426 1.19762 0.97097 0.90522 0.96531 1.21007 0.93698 0.97502 1.02073 1.21355 0.94018 0.97304 0.94578 1.20304 0.95884 0.92300 1.06488 1.17795 0.85128 0.80196 0.82962 1.90832 1.68897 1.42607 1.36485 1.48130 1.10192 1.51667 1.21658 1.19449 0.71292 0.98634 0.98124 1.21420 0.92078 1.08500 1.35101 0.92212 1.24912 0.96264 0.97063 0.95627 1.69923 1.00354 1.37482 1.45190 0.86452 0.78554 0.82649 0.79825 1.19759 1.20926 1.20845 1.21545 0.98473 0.96124 0.85651 1.19839 1.00941 0.99319 0.89071 1.28964 0.93304 0.93495 0.94156 1.81117 1.10405 1.09335 1.11280 1.17279 0.87661 0.81572 1.00183 1.91596 1.79960 1.44489 1.92952 1.20701 0.90180 0.88913 1.11394 1.98371 1.75542 1.30974 1.96963 0.90026 0.90513 0.90455 0.83870 0.83274 0.94306 0.93201 0.92606 0.88518 0.90058 0.87725 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.60 36.01 0.35 -0.47 16 2 C -0.04 -0.37 5.89 -104.52 -0.62 -0.98 16 3 C -0.12 -1.13 9.67 -39.65 -0.38 -1.51 16 4 C -0.05 -0.62 7.48 -39.19 -0.29 -0.91 16 5 C -0.15 -2.16 4.91 -104.92 -0.51 -2.67 16 6 C 0.55 10.63 6.84 -12.40 -0.08 10.55 16 7 O -0.51 -12.32 16.46 5.30 0.09 -12.23 16 8 N -0.59 -10.69 2.46 -176.23 -0.43 -11.12 16 9 C 0.24 5.64 5.23 -5.20 -0.03 5.62 16 10 C -0.53 -13.75 9.38 -34.44 -0.32 -14.07 16 11 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 14 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.11 1.44 5.19 -4.04 -0.02 1.42 16 19 C -0.05 -0.57 6.02 -29.52 -0.18 -0.75 16 20 C 0.22 2.73 15.43 -20.82 -0.32 2.41 16 21 N -0.44 -6.56 18.52 42.08 0.78 -5.78 16 22 C 0.15 2.24 7.25 -38.93 -0.28 1.96 16 23 F -0.11 -1.85 16.26 2.25 0.04 -1.81 16 24 C -0.08 -1.01 6.31 -39.49 -0.25 -1.25 16 25 Cl -0.05 -0.52 26.93 -51.86 -1.40 -1.92 16 26 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.08 0.52 6.88 -51.93 -0.36 0.17 16 28 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.15 1.57 7.57 -52.48 -0.40 1.18 16 31 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.05 1.34 7.35 -51.92 -0.38 0.95 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 35 H 0.08 0.92 4.42 -51.93 -0.23 0.69 16 36 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -32.15 348.53 -6.86 -39.01 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.86 Total: -3.78 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.04 Total: 0.94 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 1.08 Total: -41.11 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.40 Total: -1.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.15 -6.86 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279260928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.257 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds