Wall clock time and date at job start Tue Mar 31 2020 13:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38447 * 119.83457 * 2 1 4 4 C 1.37852 * 120.22683 * 179.97438 * 3 2 1 5 5 C 1.39665 * 119.90369 * 0.30475 * 4 3 2 6 6 C 1.47696 * 120.15927 * 179.70282 * 5 4 3 7 7 O 1.21578 * 119.99934 * 235.01736 * 6 5 4 8 8 N 1.34776 * 120.00490 * 55.01741 * 6 5 4 9 9 C 1.46496 * 120.00320 * 185.55788 * 8 6 5 10 10 C 1.50697 * 109.47343 * 90.00096 * 9 8 6 11 11 H 1.08005 * 119.99556 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00214 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00517 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00082 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46961 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47151 * 120.00010 * 14 12 10 17 17 H 1.48499 * 109.47183 * 239.99842 * 14 12 10 18 18 C 1.46495 * 119.99638 * 5.56146 * 8 6 5 19 19 C 1.53002 * 109.47797 * 94.96808 * 18 8 6 20 20 C 1.47198 * 109.47619 * 179.97438 * 19 18 8 21 21 N 6.14929 * 118.09530 * 74.56049 * 2 1 3 22 22 C 1.39795 * 119.67916 * 359.46108 * 5 4 3 23 23 F 1.35097 * 120.11645 * 180.27539 * 22 5 4 24 24 C 1.38293 * 119.83454 * 180.02562 * 2 1 3 25 25 Cl 1.73602 * 119.95716 * 359.97438 * 24 2 1 26 26 H 1.09010 * 109.47019 * 89.99958 * 1 2 3 27 27 H 1.08994 * 109.47517 * 209.99820 * 1 2 3 28 28 H 1.09006 * 109.47356 * 330.00152 * 1 2 3 29 29 H 1.07999 * 119.88687 * 0.02600 * 3 2 1 30 30 H 1.08005 * 120.04705 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47096 * 210.00305 * 9 8 6 32 32 H 1.09007 * 109.46901 * 329.99735 * 9 8 6 33 33 H 0.96992 * 120.00761 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47125 * 214.96788 * 18 8 6 35 35 H 1.08998 * 109.47316 * 334.96378 * 18 8 6 36 36 H 1.09007 * 109.46446 * 300.00161 * 19 18 8 37 37 H 1.08998 * 109.47038 * 59.99400 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2104 0.0005 5 6 4.2788 0.0045 -0.0054 6 6 5.7558 0.0081 -0.0115 7 8 6.3615 -0.5920 -0.8781 8 7 6.4321 0.6765 0.9437 9 6 7.8914 0.7825 0.8699 10 6 8.2666 2.0185 0.0937 11 1 7.4952 2.6606 -0.3051 12 6 9.5947 2.3290 -0.1081 13 7 10.5341 1.5469 0.3771 14 14 10.0598 3.8608 -1.0709 15 1 8.8271 4.5650 -1.5064 16 1 10.8666 4.7613 -0.2087 17 1 10.8555 3.4734 -2.2633 18 6 5.7079 1.2969 2.0558 19 6 5.6904 0.3406 3.2499 20 6 4.9632 0.9643 4.3675 21 7 4.4030 1.4442 5.2289 22 6 3.5794 -1.2059 -0.0004 23 9 4.2520 -2.3775 -0.0004 24 6 2.1950 -1.1996 -0.0005 25 17 1.3215 -2.6999 -0.0005 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6512 2.1336 0.0004 30 1 4.1087 2.1490 0.0009 31 1 8.3023 0.8474 1.8774 32 1 8.2947 -0.0976 0.3689 33 1 11.4684 1.7651 0.2347 34 1 6.2047 2.2244 2.3404 35 1 4.6848 1.5125 1.7479 36 1 5.1936 -0.5870 2.9652 37 1 6.7135 0.1250 3.5578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279260928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:20 Heat of formation + Delta-G solvation = -51.759017 kcal Electronic energy + Delta-G solvation = -24826.328191 eV Core-core repulsion = 20929.553261 eV Total energy + Delta-G solvation = -3896.774930 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.12417 -41.37229 -39.76189 -38.08369 -37.59845 -36.80149 -34.93184 -33.83404 -32.24268 -31.64762 -29.76609 -28.16880 -25.47235 -25.10525 -23.94589 -23.08203 -20.73199 -18.95731 -18.52188 -18.33605 -18.08288 -17.92997 -17.43657 -16.84499 -16.49140 -16.11252 -15.75463 -15.59783 -15.40055 -14.94817 -14.83110 -14.57913 -14.38288 -14.23685 -13.69653 -13.62090 -13.41855 -13.33186 -13.19506 -13.00699 -12.90813 -12.75868 -12.63079 -12.55297 -12.41693 -12.17072 -11.99307 -11.89342 -11.65568 -10.86529 -10.59119 -9.89002 -9.83180 -9.55504 -8.17831 -6.30623 -0.35086 -0.15246 0.85994 1.41976 1.44631 1.54348 1.55513 1.74960 1.80066 2.11994 2.30881 2.45242 2.86801 3.00596 3.14985 3.42489 3.70272 3.73548 3.96481 3.99768 4.06920 4.27936 4.45718 4.47785 4.72927 4.74994 4.77783 4.83260 4.95600 5.02297 5.08110 5.21853 5.24273 5.31580 5.54705 5.58480 5.82877 6.09795 6.52857 6.57240 6.78255 7.19324 7.41286 8.89803 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.003996 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.508521 B = 7005.402834 C = 7665.321725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.025 4.025 3 C -0.104 4.104 4 C -0.053 4.053 5 C -0.164 4.164 6 C 0.552 3.448 7 O -0.577 6.577 8 N -0.583 5.583 9 C 0.257 3.743 10 C -0.540 4.540 11 H 0.061 0.939 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.961 3.039 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.288 1.288 18 C 0.106 3.894 19 C -0.040 4.040 20 C 0.246 3.754 21 N -0.477 5.477 22 C 0.130 3.870 23 F -0.134 7.134 24 C -0.090 4.090 25 Cl -0.043 7.043 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.188 0.812 30 H 0.161 0.839 31 H 0.041 0.959 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.129 -0.505 1.894 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.026 4.026 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.168 4.168 6 C 0.340 3.660 7 O -0.457 6.457 8 N -0.313 5.313 9 C 0.137 3.863 10 C -0.579 4.579 11 H 0.080 0.920 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.786 3.214 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.214 1.214 18 C -0.019 4.019 19 C -0.082 4.082 20 C -0.072 4.072 21 N -0.155 5.155 22 C 0.109 3.891 23 F -0.113 7.113 24 C -0.117 4.117 25 Cl -0.014 7.014 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.205 0.795 30 H 0.178 0.822 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.482 -0.302 2.771 22.654 hybrid contribution 1.567 -0.415 -0.921 1.865 sum -20.915 -0.716 1.850 21.009 Atomic orbital electron populations 1.21080 0.86877 1.05267 1.04640 1.20246 0.98827 0.89628 0.93880 1.21455 0.92487 0.98973 0.99218 1.21544 0.95245 0.96177 0.94163 1.19914 0.92851 0.94015 1.10014 1.18449 0.87103 0.78715 0.81747 1.90785 1.70781 1.45236 1.38888 1.47983 1.08579 1.51741 1.22956 1.18934 0.74413 0.95829 0.97153 1.21754 0.92259 1.08974 1.34889 0.92029 1.25752 0.96405 1.00002 0.96630 1.70039 1.00661 1.39282 1.46656 0.85463 0.78463 0.79271 0.78200 1.18623 1.19934 1.21405 1.21778 0.99257 0.96127 0.84689 1.19738 1.01291 0.99198 0.87931 1.28841 0.92322 0.92472 0.93548 1.81153 1.11664 1.10412 1.12256 1.17544 0.88764 0.80767 1.01984 1.91532 1.80649 1.45687 1.93408 1.20845 0.89230 0.90160 1.11506 1.98372 1.75049 1.30998 1.96938 0.88637 0.90656 0.87771 0.79507 0.82180 0.94136 0.97831 0.92558 0.88394 0.87353 0.86392 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.60 71.24 0.68 -0.39 16 2 C -0.02 -0.38 5.89 -19.80 -0.12 -0.50 16 3 C -0.10 -1.39 9.67 22.23 0.22 -1.17 16 4 C -0.05 -1.07 7.48 22.52 0.17 -0.90 16 5 C -0.16 -4.78 4.91 -20.06 -0.10 -4.88 16 6 C 0.55 21.90 6.84 86.74 0.59 22.49 16 7 O -0.58 -29.53 16.46 -3.96 -0.07 -29.59 16 8 N -0.58 -21.70 2.46 -829.75 -2.04 -23.74 16 9 C 0.26 12.43 5.23 85.63 0.45 12.88 16 10 C -0.54 -28.38 9.38 25.60 0.24 -28.14 16 11 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 12 C 0.01 0.62 5.46 84.65 0.46 1.08 16 13 N -0.93 -53.23 13.29 21.45 0.28 -52.95 16 14 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 C 0.11 2.69 5.19 86.38 0.45 3.14 16 19 C -0.04 -0.87 6.02 28.79 0.17 -0.69 16 20 C 0.25 5.68 15.43 89.46 1.38 7.06 16 21 N -0.48 -13.28 18.52 19.98 0.37 -12.91 16 22 C 0.13 3.77 7.25 22.69 0.16 3.93 16 23 F -0.13 -4.65 16.26 44.97 0.73 -3.92 16 24 C -0.09 -1.98 6.31 22.33 0.14 -1.84 16 25 Cl -0.04 -0.88 26.93 -2.72 -0.07 -0.95 16 26 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.74 6.88 -2.39 -0.02 0.72 16 28 H 0.10 0.43 8.08 -2.38 -0.02 0.41 16 29 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 30 H 0.16 2.87 7.57 -2.91 -0.02 2.85 16 31 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 32 H 0.00 0.20 7.35 -2.38 -0.02 0.19 16 33 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.10 2.51 8.11 -2.39 -0.02 2.49 16 35 H 0.11 2.19 4.42 -2.39 -0.01 2.18 16 36 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -74.19 348.53 7.26 -66.93 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.12 Total: 0.56 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.90 Total: 12.07 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.38 Total: -89.60 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.07 Total: -29.59 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.73 Total: -3.92 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -74.19 7.26 -66.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279260928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.166 kcal (2) G-P(sol) polarization free energy of solvation -74.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds