Wall clock time and date at job start Tue Mar 31 2020 14:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86794 * 120.00485 * 2 1 4 4 H 1.48510 * 109.47190 * 85.00617 * 3 2 1 5 5 H 1.48498 * 109.47414 * 205.00880 * 3 2 1 6 6 H 1.48502 * 109.47091 * 325.00874 * 3 2 1 7 7 C 1.39942 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00138 * 150.53583 * 7 2 1 9 9 C 1.41402 * 120.00482 * 330.54184 * 7 2 1 10 10 C 1.40728 * 120.23859 * 339.12866 * 9 7 2 11 11 C 1.37604 * 119.74447 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24757 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.50177 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.24482 * 359.67227 * 13 12 11 15 15 S 1.76202 * 120.12652 * 180.32056 * 14 13 12 16 16 O 1.42092 * 106.40216 * 0.23145 * 15 14 13 17 17 O 1.42107 * 106.40034 * 133.15302 * 15 14 13 18 18 N 1.65601 * 107.21609 * 246.68814 * 15 14 13 19 19 N 1.40097 * 119.99665 * 54.73361 * 18 15 14 20 20 C 1.34778 * 120.00162 * 123.92570 * 19 18 15 21 21 O 1.21277 * 120.00250 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00141 * 179.97438 * 20 19 18 23 23 C 1.53778 * 113.61268 * 279.13434 * 22 20 19 24 24 C 1.53953 * 87.02224 * 220.04944 * 23 22 20 25 25 C 1.53779 * 87.11148 * 25.35984 * 24 23 22 26 26 H 0.96999 * 119.99798 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.12914 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87798 * 180.02562 * 11 10 9 29 29 H 1.07993 * 119.75077 * 179.97438 * 12 11 10 30 30 H 1.07993 * 119.87660 * 179.97438 * 13 12 11 31 31 H 0.96993 * 120.00305 * 234.72500 * 18 15 14 32 32 H 0.97002 * 120.00154 * 303.91795 * 19 18 15 33 33 H 1.08994 * 112.85094 * 50.32797 * 22 20 19 34 34 H 1.09002 * 113.61908 * 334.56423 * 23 22 20 35 35 H 1.09004 * 113.61449 * 105.47115 * 23 22 20 36 36 H 1.09008 * 113.53744 * 270.81737 * 24 23 22 37 37 H 1.08992 * 113.67029 * 139.93498 * 24 23 22 38 38 H 1.08994 * 113.62023 * 220.09266 * 25 24 23 39 39 H 1.09004 * 113.68582 * 89.19582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3843 2.1073 1.3948 5 1 3.5886 1.4118 -0.5919 6 1 1.4966 2.6199 -0.8029 7 6 2.0078 -1.2120 0.0005 8 1 2.9831 -1.2728 -0.4595 9 6 1.4380 -2.3572 0.6033 10 6 0.4166 -2.2196 1.5616 11 6 -0.1304 -3.3409 2.1420 12 6 0.3215 -4.6026 1.7864 13 6 1.3277 -4.7499 0.8444 14 6 1.8850 -3.6426 0.2464 15 16 3.1581 -3.8338 -0.9568 16 8 3.3775 -5.2313 -1.0901 17 8 2.8076 -2.9944 -2.0486 18 7 4.5446 -3.2024 -0.3078 19 7 5.0089 -3.6596 0.9324 20 6 6.2578 -4.1537 1.0440 21 8 6.9797 -4.2030 0.0708 22 6 6.7574 -4.6449 2.3783 23 6 7.2431 -3.5192 3.3066 24 6 8.3933 -4.4589 3.7118 25 6 8.2121 -5.1425 2.3463 26 1 -0.4850 0.8401 -0.0004 27 1 0.0640 -1.2377 1.8410 28 1 -0.9146 -3.2379 2.8774 29 1 -0.1132 -5.4772 2.2473 30 1 1.6723 -5.7374 0.5753 31 1 5.0354 -2.5162 -0.7864 32 1 4.4315 -3.6204 1.7109 33 1 6.0687 -5.3400 2.8583 34 1 7.5748 -2.6273 2.7749 35 1 6.5531 -3.2961 4.1204 36 1 8.1520 -5.1027 4.5577 37 1 9.3525 -3.9536 3.8233 38 1 8.3033 -6.2279 2.3857 39 1 8.8088 -4.6963 1.5506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279845916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:28 Heat of formation + Delta-G solvation = -49.889149 kcal Electronic energy + Delta-G solvation = -25748.853721 eV Core-core repulsion = 21977.663886 eV Total energy + Delta-G solvation = -3771.189835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14820 -37.71723 -37.54664 -36.33900 -35.21554 -34.97114 -34.09718 -30.44823 -30.17883 -29.68286 -26.34827 -25.73353 -25.65433 -21.85111 -21.40050 -21.19553 -19.68873 -18.95402 -17.84237 -17.71040 -17.49410 -16.83314 -15.97226 -15.53588 -15.51690 -14.96289 -14.55819 -14.44121 -14.17900 -13.44530 -13.27906 -12.99061 -12.87845 -12.58366 -12.26956 -12.05967 -11.84999 -11.58048 -11.46573 -11.32726 -11.28282 -11.19676 -11.16410 -10.82195 -10.71968 -10.67185 -10.64026 -10.53174 -9.99780 -9.62769 -9.49514 -9.28326 -8.60236 -8.17661 -7.85169 -7.32828 -4.87799 1.15728 2.22375 2.59546 2.71921 2.76658 2.86703 2.91803 3.01639 3.63463 4.12500 4.23127 4.36145 4.45464 4.57154 4.64940 4.70600 5.10444 5.20448 5.42759 5.51166 5.53914 5.64730 5.72717 5.83090 5.94636 5.96986 6.11857 6.27551 6.32863 6.37913 6.61211 6.79057 6.95199 7.16631 7.27650 7.39267 7.48234 7.60948 7.70669 7.75598 8.14391 8.30315 8.46268 8.51280 9.62049 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.004962 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.259140 B = 5642.090943 C = 6205.388537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.253 1.253 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.092 0.908 9 C 0.181 3.819 10 C -0.169 4.169 11 C -0.069 4.069 12 C -0.258 4.258 13 C 0.007 3.993 14 C -0.788 4.788 15 S 2.695 3.305 16 O -0.985 6.985 17 O -0.948 6.948 18 N -0.910 5.910 19 N -0.498 5.498 20 C 0.523 3.477 21 O -0.532 6.532 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.116 4.116 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.421 0.579 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -1.701 9.040 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.176 1.176 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.110 0.890 9 C 0.176 3.824 10 C -0.189 4.189 11 C -0.088 4.088 12 C -0.279 4.279 13 C -0.013 4.013 14 C -0.885 4.885 15 S 2.793 3.207 16 O -0.975 6.975 17 O -0.937 6.937 18 N -0.758 5.758 19 N -0.249 5.249 20 C 0.308 3.692 21 O -0.407 6.407 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.179 4.179 25 C -0.154 4.154 26 H 0.104 0.896 27 H 0.133 0.867 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.946 -2.099 7.488 11.854 hybrid contribution -0.462 1.366 0.755 1.628 sum 8.484 -0.732 8.243 11.851 Atomic orbital electron populations 1.69882 1.08290 1.30961 1.27241 1.26033 0.94577 1.02197 0.91095 0.86261 0.81424 0.79587 0.79679 1.18669 1.17582 1.19552 1.19966 1.04055 0.93438 1.29277 0.88975 1.16907 0.88492 0.89241 0.87726 1.21291 1.00687 0.97418 0.99518 1.20849 0.97132 0.93338 0.97466 1.20432 1.04846 0.96132 1.06454 1.20251 0.93242 0.95716 0.92098 1.29499 1.28287 0.99757 1.30990 1.01571 0.72363 0.72480 0.74262 1.93463 1.85200 1.32491 1.86318 1.93597 1.81267 1.68424 1.50434 1.55817 1.43353 1.55611 1.21043 1.44438 1.15384 1.62725 1.02400 1.20915 0.80621 0.76764 0.90907 1.90675 1.55785 1.54938 1.39261 1.22802 0.99024 1.00611 0.93103 1.22909 0.98338 0.96643 0.98495 1.22857 0.98894 0.98661 0.97474 1.22814 0.93699 1.01043 0.97834 0.89647 0.86710 0.88800 0.88678 0.87383 0.74526 0.73726 0.86253 0.89489 0.90244 0.89819 0.91005 0.90837 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.25 11.49 55.55 0.64 -16.61 16 2 C 0.09 1.97 4.88 -17.34 -0.08 1.89 16 3 Si 0.91 16.75 29.65 -169.99 -5.04 11.71 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.25 -4.66 7.11 56.52 0.40 -4.26 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.44 -10.49 7.76 -37.74 -0.29 -10.79 16 8 H 0.09 2.10 5.75 -52.48 -0.30 1.80 16 9 C 0.18 4.33 5.59 -106.82 -0.60 3.74 16 10 C -0.17 -3.91 8.77 -38.87 -0.34 -4.25 16 11 C -0.07 -1.44 10.02 -39.66 -0.40 -1.84 16 12 C -0.26 -5.29 10.05 -39.29 -0.39 -5.69 16 13 C 0.01 0.15 9.54 -39.66 -0.38 -0.23 16 14 C -0.79 -17.89 5.94 -38.87 -0.23 -18.12 16 15 S 2.70 59.18 5.16 -107.50 -0.55 58.62 16 16 O -0.98 -23.18 16.97 -57.17 -0.97 -24.15 16 17 O -0.95 -23.45 16.30 -57.17 -0.93 -24.38 16 18 N -0.91 -16.91 5.57 60.35 0.34 -16.57 16 19 N -0.50 -7.92 6.26 31.22 0.20 -7.73 16 20 C 0.52 8.09 7.47 -10.98 -0.08 8.01 16 21 O -0.53 -10.13 16.24 5.56 0.09 -10.04 16 22 C -0.13 -1.44 4.14 -90.96 -0.38 -1.82 16 23 C -0.13 -1.12 7.64 -25.83 -0.20 -1.32 16 24 C -0.14 -1.10 8.09 -25.83 -0.21 -1.31 16 25 C -0.12 -1.16 7.40 -25.92 -0.19 -1.36 16 26 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 27 H 0.11 2.65 6.35 -52.48 -0.33 2.32 16 28 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.11 2.17 7.32 -52.49 -0.38 1.79 16 31 H 0.42 7.22 8.96 -176.26 -1.58 5.64 16 32 H 0.42 5.77 8.83 -182.60 -1.61 4.16 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.11 7.45 -51.93 -0.39 0.72 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -31.76 344.13 -11.94 -43.69 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.11 Total: 13.34 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -3.77 Total: -33.08 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 1.17 Total: -40.91 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -1.81 Total: -58.56 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.04 Total: 11.71 kcal Atomic # 16 Polarization: 59.18 SS G_CDS: -0.55 Total: 58.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.76 -11.94 -43.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279845916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.195 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds