Wall clock time and date at job start Tue Mar 31 2020 14:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86794 * 120.00485 * 2 1 4 4 H 1.48510 * 109.47190 * 85.00617 * 3 2 1 5 5 H 1.48498 * 109.47414 * 205.00880 * 3 2 1 6 6 H 1.48502 * 109.47091 * 325.00874 * 3 2 1 7 7 C 1.39942 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00138 * 150.53583 * 7 2 1 9 9 C 1.41402 * 120.00482 * 330.54184 * 7 2 1 10 10 C 1.40728 * 120.23859 * 339.12866 * 9 7 2 11 11 C 1.37604 * 119.74447 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24757 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.50177 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.24482 * 359.67227 * 13 12 11 15 15 S 1.76202 * 120.12652 * 180.32056 * 14 13 12 16 16 O 1.42092 * 106.40216 * 0.23145 * 15 14 13 17 17 O 1.42107 * 106.40034 * 133.15302 * 15 14 13 18 18 N 1.65601 * 107.21609 * 246.68814 * 15 14 13 19 19 N 1.40097 * 119.99665 * 54.73361 * 18 15 14 20 20 C 1.34778 * 120.00162 * 123.92570 * 19 18 15 21 21 O 1.21277 * 120.00250 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00141 * 179.97438 * 20 19 18 23 23 C 1.53778 * 113.61268 * 279.13434 * 22 20 19 24 24 C 1.53953 * 87.02224 * 220.04944 * 23 22 20 25 25 C 1.53779 * 87.11148 * 25.35984 * 24 23 22 26 26 H 0.96999 * 119.99798 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.12914 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87798 * 180.02562 * 11 10 9 29 29 H 1.07993 * 119.75077 * 179.97438 * 12 11 10 30 30 H 1.07993 * 119.87660 * 179.97438 * 13 12 11 31 31 H 0.96993 * 120.00305 * 234.72500 * 18 15 14 32 32 H 0.97002 * 120.00154 * 303.91795 * 19 18 15 33 33 H 1.08994 * 112.85094 * 50.32797 * 22 20 19 34 34 H 1.09002 * 113.61908 * 334.56423 * 23 22 20 35 35 H 1.09004 * 113.61449 * 105.47115 * 23 22 20 36 36 H 1.09008 * 113.53744 * 270.81737 * 24 23 22 37 37 H 1.08992 * 113.67029 * 139.93498 * 24 23 22 38 38 H 1.08994 * 113.62023 * 220.09266 * 25 24 23 39 39 H 1.09004 * 113.68582 * 89.19582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3843 2.1073 1.3948 5 1 3.5886 1.4118 -0.5919 6 1 1.4966 2.6199 -0.8029 7 6 2.0078 -1.2120 0.0005 8 1 2.9831 -1.2728 -0.4595 9 6 1.4380 -2.3572 0.6033 10 6 0.4166 -2.2196 1.5616 11 6 -0.1304 -3.3409 2.1420 12 6 0.3215 -4.6026 1.7864 13 6 1.3277 -4.7499 0.8444 14 6 1.8850 -3.6426 0.2464 15 16 3.1581 -3.8338 -0.9568 16 8 3.3775 -5.2313 -1.0901 17 8 2.8076 -2.9944 -2.0486 18 7 4.5446 -3.2024 -0.3078 19 7 5.0089 -3.6596 0.9324 20 6 6.2578 -4.1537 1.0440 21 8 6.9797 -4.2030 0.0708 22 6 6.7574 -4.6449 2.3783 23 6 7.2431 -3.5192 3.3066 24 6 8.3933 -4.4589 3.7118 25 6 8.2121 -5.1425 2.3463 26 1 -0.4850 0.8401 -0.0004 27 1 0.0640 -1.2377 1.8410 28 1 -0.9146 -3.2379 2.8774 29 1 -0.1132 -5.4772 2.2473 30 1 1.6723 -5.7374 0.5753 31 1 5.0354 -2.5162 -0.7864 32 1 4.4315 -3.6204 1.7109 33 1 6.0687 -5.3400 2.8583 34 1 7.5748 -2.6273 2.7749 35 1 6.5531 -3.2961 4.1204 36 1 8.1520 -5.1027 4.5577 37 1 9.3525 -3.9536 3.8233 38 1 8.3033 -6.2279 2.3857 39 1 8.8088 -4.6963 1.5506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279845916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:28 Heat of formation + Delta-G solvation = -71.963385 kcal Electronic energy + Delta-G solvation = -25749.810932 eV Core-core repulsion = 21977.663886 eV Total energy + Delta-G solvation = -3772.147046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26079 -39.40305 -38.56627 -38.16499 -36.84489 -36.61656 -35.78437 -32.12855 -31.62374 -31.34876 -27.43026 -27.23020 -26.46870 -23.53742 -23.01576 -22.42308 -20.96628 -20.15274 -19.55683 -19.18333 -18.81556 -18.34843 -17.63200 -17.17651 -16.47217 -16.37953 -16.06209 -15.90683 -15.39242 -15.17418 -14.95565 -14.48916 -13.90834 -13.71750 -13.62848 -13.37200 -13.35339 -13.16699 -13.07528 -12.95062 -12.92034 -12.82724 -12.49710 -12.22615 -12.14919 -12.13221 -11.65974 -11.38461 -11.25879 -11.15347 -11.00064 -10.83752 -10.03850 -9.87993 -9.57732 -8.99455 -6.63320 -0.53462 0.50860 0.95412 1.34752 1.35634 1.47929 1.50574 1.50973 2.11803 2.47826 2.71959 2.87219 3.44443 3.51448 3.67616 3.76650 3.80472 3.96093 4.22847 4.35338 4.49460 4.73891 4.74637 4.85574 4.89580 4.92579 4.97426 5.09806 5.10012 5.15777 5.21838 5.25820 5.47009 5.56472 5.70564 5.75433 5.96796 6.01644 6.04317 6.32519 6.43233 6.57657 6.79714 7.19722 7.99332 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.004962 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.259140 B = 5642.090943 C = 6205.388537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.051 3.949 3 Si 0.970 3.030 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.264 1.264 7 C -0.472 4.472 8 H 0.091 0.909 9 C 0.163 3.837 10 C -0.194 4.194 11 C -0.065 4.065 12 C -0.253 4.253 13 C -0.005 4.005 14 C -0.797 4.797 15 S 2.714 3.286 16 O -1.005 7.005 17 O -0.984 6.984 18 N -0.912 5.912 19 N -0.494 5.494 20 C 0.518 3.482 21 O -0.573 6.573 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.302 0.698 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.423 0.577 32 H 0.432 0.568 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.073 -1.883 11.479 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.172 4.172 3 Si 0.789 3.211 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.158 3.842 10 C -0.213 4.213 11 C -0.083 4.083 12 C -0.273 4.273 13 C -0.025 4.025 14 C -0.895 4.895 15 S 2.812 3.188 16 O -0.995 6.995 17 O -0.972 6.972 18 N -0.761 5.761 19 N -0.247 5.247 20 C 0.306 3.694 21 O -0.450 6.450 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.162 4.162 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.261 0.739 32 H 0.275 0.725 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.208 -2.287 9.943 13.743 hybrid contribution -0.566 1.311 0.019 1.428 sum 8.643 -0.976 9.961 13.224 Atomic orbital electron populations 1.69881 1.09455 1.32369 1.27922 1.26812 0.95225 1.04891 0.90296 0.85361 0.79759 0.75653 0.80364 1.17123 1.17978 1.18873 1.20206 1.04497 0.94562 1.30541 0.89090 1.17161 0.89084 0.89724 0.88250 1.21358 1.01567 0.97998 1.00413 1.21206 0.97072 0.92834 0.97227 1.20818 1.03843 0.97147 1.05542 1.20518 0.93672 0.95837 0.92453 1.29531 1.28854 0.99999 1.31068 1.00790 0.72573 0.71657 0.73759 1.93428 1.85680 1.33657 1.86686 1.93541 1.82246 1.69060 1.52400 1.55330 1.42739 1.55580 1.22455 1.44720 1.15865 1.62719 1.01393 1.21936 0.79715 0.75542 0.92244 1.90655 1.56719 1.56538 1.41120 1.23086 0.99699 1.02088 0.90709 1.22945 0.99114 0.95791 0.98248 1.22833 0.98833 0.98026 0.96560 1.22860 0.92754 1.01748 0.98801 0.88642 0.87432 0.85788 0.85430 0.86256 0.73856 0.72489 0.83712 0.90657 0.88242 0.87608 0.90215 0.89890 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.26 11.49 21.83 0.25 -36.01 16 2 C 0.05 2.32 4.88 85.26 0.42 2.74 16 3 Si 0.97 34.10 29.65 68.60 2.03 36.13 16 4 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 6 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 7 C -0.47 -22.82 7.76 23.46 0.18 -22.64 16 8 H 0.09 4.26 5.75 -2.91 -0.02 4.25 16 9 C 0.16 7.83 5.59 -21.29 -0.12 7.71 16 10 C -0.19 -8.86 8.77 22.73 0.20 -8.66 16 11 C -0.06 -2.58 10.02 22.22 0.22 -2.36 16 12 C -0.25 -9.74 10.05 22.46 0.23 -9.51 16 13 C 0.00 -0.20 9.54 22.22 0.21 0.01 16 14 C -0.80 -36.22 5.94 22.73 0.14 -36.08 16 15 S 2.71 121.32 5.16 -56.49 -0.29 121.03 16 16 O -1.00 -47.72 16.97 -128.00 -2.17 -49.90 16 17 O -0.98 -50.18 16.30 -128.00 -2.09 -52.26 16 18 N -0.91 -34.45 5.57 37.02 0.21 -34.24 16 19 N -0.49 -15.59 6.26 -173.53 -1.09 -16.68 16 20 C 0.52 15.88 7.47 87.66 0.65 16.53 16 21 O -0.57 -22.21 16.24 -3.02 -0.05 -22.26 16 22 C -0.13 -2.66 4.14 -11.01 -0.05 -2.70 16 23 C -0.12 -1.90 7.64 31.18 0.24 -1.66 16 24 C -0.13 -1.58 8.09 31.18 0.25 -1.33 16 25 C -0.12 -2.30 7.40 31.12 0.23 -2.07 16 26 H 0.30 12.43 8.30 -92.71 -0.77 11.66 16 27 H 0.11 5.00 6.35 -2.91 -0.02 4.98 16 28 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.12 4.64 7.32 -2.91 -0.02 4.62 16 31 H 0.42 15.12 8.96 -217.37 -1.95 13.17 16 32 H 0.43 11.53 8.83 -213.32 -1.88 9.64 16 33 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 35 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.69 7.45 -2.39 -0.02 1.68 16 Total: -1.00 -69.14 344.13 -3.11 -72.25 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -2.72 Total: 41.98 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 2.80 Total: -60.04 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -0.63 Total: -86.93 kcal Atomic # 8 Polarization: -120.11 SS G_CDS: -4.31 Total: -124.42 kcal Atomic # 14 Polarization: 34.10 SS G_CDS: 2.03 Total: 36.13 kcal Atomic # 16 Polarization: 121.32 SS G_CDS: -0.29 Total: 121.03 kcal Total: -69.14 -3.11 -72.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279845916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.284 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds