Wall clock time and date at job start Tue Mar 31 2020 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 108.58131 * 2 1 4 4 O 1.42095 * 108.58158 * 228.97071 * 2 1 3 5 5 C 1.81404 * 101.92011 * 114.48602 * 2 1 3 6 6 C 1.50692 * 115.55122 * 63.70690 * 5 2 1 7 7 O 1.20833 * 119.99835 * 226.17093 * 6 5 2 8 8 O 1.34226 * 120.00310 * 46.44547 * 6 5 2 9 9 C 1.45196 * 117.00109 * 179.72784 * 8 6 5 10 10 C 1.50703 * 109.47441 * 180.02562 * 9 8 6 11 11 C 1.38633 * 119.74589 * 269.72940 * 10 9 8 12 12 C 1.37617 * 120.24339 * 179.71772 * 11 10 9 13 13 C 1.40718 * 119.74696 * 0.56606 * 12 11 10 14 14 C 1.41399 * 120.24428 * 179.68112 * 13 12 11 15 15 H 1.07997 * 119.99955 * 27.09220 * 14 13 12 16 16 C 1.39948 * 119.99825 * 207.09579 * 14 13 12 17 17 N 1.30828 * 119.99956 * 19.02986 * 16 14 13 18 18 Si 1.86796 * 119.99698 * 199.03027 * 16 14 13 19 19 H 1.48491 * 109.47364 * 59.99878 * 18 16 14 20 20 H 1.48506 * 109.46787 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46985 * 299.99568 * 18 16 14 22 22 C 1.40713 * 119.50907 * 359.70930 * 13 12 11 23 23 C 1.37610 * 119.74565 * 359.97438 * 22 13 12 24 24 C 1.53004 * 117.49614 * 209.37361 * 5 2 1 25 25 C 1.53007 * 117.49621 * 278.03016 * 5 2 1 26 26 H 1.08998 * 109.47033 * 309.98210 * 1 2 3 27 27 H 1.08997 * 109.46622 * 69.98490 * 1 2 3 28 28 H 1.08996 * 109.47120 * 189.98135 * 1 2 3 29 29 H 1.09002 * 109.47554 * 300.00040 * 9 8 6 30 30 H 1.09003 * 109.47213 * 60.00028 * 9 8 6 31 31 H 1.07997 * 119.87930 * 359.97391 * 11 10 9 32 32 H 1.08011 * 120.12716 * 180.27624 * 12 11 10 33 33 H 0.97002 * 119.99586 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.12506 * 179.97438 * 22 13 12 35 35 H 1.08003 * 119.87934 * 180.02562 * 23 22 13 36 36 H 1.08996 * 117.49946 * 215.00206 * 24 5 2 37 37 H 1.09004 * 117.50015 * 0.02562 * 24 5 2 38 38 H 1.08998 * 117.49785 * 359.97438 * 25 5 2 39 39 H 1.08996 * 117.49500 * 144.97583 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 1.7337 -2.1601 1.8020 7 8 1.1596 -2.4830 2.8150 8 8 1.9710 -3.0713 0.8456 9 6 1.5098 -4.4252 1.0959 10 6 1.8627 -5.3014 -0.0783 11 6 0.9659 -5.4413 -1.1262 12 6 1.2800 -6.2342 -2.2062 13 6 2.5119 -6.9136 -2.2388 14 6 2.8426 -7.7364 -3.3401 15 1 2.4174 -7.5342 -4.3121 16 6 3.7207 -8.8128 -3.1706 17 7 3.9443 -9.2925 -1.9742 18 14 4.5735 -9.5647 -4.6528 19 1 5.3995 -8.5305 -5.3260 20 1 5.4445 -10.6824 -4.2084 21 1 3.5541 -10.0794 -5.6021 22 6 3.4119 -6.7687 -1.1668 23 6 3.0795 -5.9654 -0.1001 24 6 3.4918 -0.3150 2.2979 25 6 2.1491 0.1847 2.8370 26 1 -0.3633 0.6603 0.7874 27 1 -0.3632 0.3517 -0.9656 28 1 -0.3633 -1.0121 0.1781 29 1 1.9899 -4.8122 1.9947 30 1 0.4287 -4.4209 1.2346 31 1 0.0189 -4.9229 -1.0968 32 1 0.5818 -6.3384 -3.0237 33 1 4.5533 -10.0384 -1.8567 34 1 4.3599 -7.2859 -1.1813 35 1 3.7689 -5.8522 0.7235 36 1 4.0200 -1.0686 2.8821 37 1 4.1238 0.4040 1.7766 38 1 1.8983 1.2322 2.6700 39 1 1.7935 -0.2401 3.7757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280153939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:30 Heat of formation + Delta-G solvation = -123.882409 kcal Electronic energy + Delta-G solvation = -24841.826191 eV Core-core repulsion = 21035.135016 eV Total energy + Delta-G solvation = -3806.691175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77540 -39.58890 -38.60066 -37.91975 -37.24255 -37.06582 -35.68460 -32.64473 -31.26526 -30.49638 -29.20173 -26.87224 -25.18305 -23.73059 -22.98680 -22.33549 -21.86946 -20.14389 -19.29100 -19.24720 -18.17015 -17.72234 -17.23978 -17.14734 -16.86870 -16.65858 -16.09755 -15.69130 -15.50091 -15.11872 -14.50854 -14.21615 -14.13079 -14.02998 -13.97050 -13.87275 -13.38302 -13.27288 -13.14783 -13.11151 -13.01956 -12.82977 -12.66446 -12.44300 -12.39224 -12.22588 -11.98644 -11.77485 -11.73990 -11.49318 -11.43606 -11.30536 -11.04054 -9.44401 -9.34567 -8.71268 -6.40409 -1.14222 0.66565 0.82097 1.09687 1.35605 1.39658 1.49955 1.60876 1.73050 2.08350 2.19194 2.55806 2.69509 2.94281 3.28311 3.52034 3.57623 3.76097 3.99762 4.01422 4.06522 4.13811 4.27434 4.44539 4.47811 4.48282 4.52696 4.73207 4.85657 4.95227 4.97992 5.11232 5.25849 5.31404 5.37888 5.64126 5.85418 6.03926 6.10214 6.30880 6.51747 6.62296 6.87244 6.95551 8.27529 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.002944 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.126525 B = 9508.533226 C = 9909.543379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.461 3.539 3 O -0.944 6.944 4 O -0.959 6.959 5 C -0.675 4.675 6 C 0.507 3.493 7 O -0.513 6.513 8 O -0.351 6.351 9 C 0.137 3.863 10 C -0.232 4.232 11 C -0.064 4.064 12 C -0.245 4.245 13 C 0.091 3.909 14 C -0.499 4.499 15 H 0.080 0.920 16 C 0.038 3.962 17 N -0.819 5.819 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.193 4.193 23 C -0.081 4.081 24 C -0.101 4.101 25 C -0.074 4.074 26 H 0.166 0.834 27 H 0.153 0.847 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.291 0.709 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 17.809 8.749 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.642 3.358 3 O -0.941 6.941 4 O -0.956 6.956 5 C -0.761 4.761 6 C 0.349 3.651 7 O -0.402 6.402 8 O -0.267 6.267 9 C 0.066 3.934 10 C -0.233 4.233 11 C -0.082 4.082 12 C -0.264 4.264 13 C 0.089 3.911 14 C -0.528 4.528 15 H 0.098 0.902 16 C -0.178 4.178 17 N -0.444 5.444 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.212 4.212 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.112 4.112 26 H 0.184 0.816 27 H 0.171 0.829 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.709 17.731 8.555 20.033 hybrid contribution -0.101 -1.416 -0.057 1.420 sum -3.809 16.315 8.498 18.786 Atomic orbital electron populations 1.30109 1.21367 1.13081 1.14479 1.06669 0.80433 0.74177 0.74508 1.93569 1.81214 1.33652 1.85710 1.93643 1.80898 1.67676 1.53430 1.31561 1.20391 1.00301 1.23885 1.21616 0.75790 0.86359 0.81337 1.90619 1.39459 1.81008 1.29154 1.86796 1.73228 1.21364 1.45338 1.21728 0.99503 0.76001 0.96206 1.18985 0.98272 1.06553 0.99513 1.20749 0.98312 0.96419 0.92745 1.21205 0.97594 1.07197 1.00449 1.18032 0.90479 0.89944 0.92650 1.19888 1.25288 1.10975 0.96651 0.90209 1.26796 0.94849 0.96111 1.00082 1.69868 1.28448 1.20483 1.25599 0.85242 0.78645 0.77988 0.77805 1.18587 1.19011 1.18107 1.21156 1.00088 1.03139 0.96813 1.20777 0.95563 0.96245 0.97310 1.23312 0.88655 1.02676 0.99192 1.23399 0.97356 0.98080 0.92319 0.81555 0.82918 0.85277 0.90884 0.89772 0.85986 0.87793 0.89854 0.88373 0.87518 0.86194 0.84064 0.82383 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -8.11 10.53 113.37 1.19 -6.92 16 2 S 2.46 51.93 5.37 -56.49 -0.30 51.63 16 3 O -0.94 -21.12 17.72 -127.37 -2.26 -23.37 16 4 O -0.96 -31.72 17.43 -124.21 -2.16 -33.88 16 5 C -0.67 -13.56 2.39 -11.54 -0.03 -13.59 16 6 C 0.51 14.28 7.25 71.23 0.52 14.80 16 7 O -0.51 -15.55 16.08 21.94 0.35 -15.20 16 8 O -0.35 -12.32 9.49 -48.75 -0.46 -12.78 16 9 C 0.14 4.94 5.58 71.24 0.40 5.34 16 10 C -0.23 -10.24 5.54 -19.67 -0.11 -10.35 16 11 C -0.06 -2.87 9.67 22.22 0.21 -2.65 16 12 C -0.25 -12.29 9.80 22.73 0.22 -12.07 16 13 C 0.09 5.05 5.54 -21.29 -0.12 4.93 16 14 C -0.50 -27.25 9.03 23.46 0.21 -27.04 16 15 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 16 C 0.04 1.91 5.09 85.26 0.43 2.35 16 17 N -0.82 -42.93 11.21 21.83 0.24 -42.68 16 18 Si 0.98 38.19 29.60 68.60 2.03 40.22 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 22 C -0.19 -10.40 8.68 22.73 0.20 -10.20 16 23 C -0.08 -3.86 9.67 22.22 0.21 -3.64 16 24 C -0.10 -1.53 9.89 30.62 0.30 -1.23 16 25 C -0.07 -0.87 9.66 30.62 0.30 -0.58 16 26 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.13 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 30 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 31 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.10 4.87 8.06 -2.90 -0.02 4.84 16 33 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 34 H 0.10 5.49 6.41 -2.91 -0.02 5.47 16 35 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.16 0.85 8.07 -2.39 -0.02 0.83 16 39 H 0.13 1.49 7.72 -2.39 -0.02 1.47 16 Total: -1.00 -75.06 355.92 2.45 -72.60 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 1.07 Total: 24.31 kcal Atomic # 6 Polarization: -64.79 SS G_CDS: 3.95 Total: -60.84 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.24 Total: -42.68 kcal Atomic # 8 Polarization: -80.71 SS G_CDS: -4.53 Total: -85.24 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.30 Total: 51.63 kcal Total: -75.06 2.45 -72.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280153939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.278 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds