Wall clock time and date at job start Tue Mar 31 2020 13:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47061 * 47.77815 * 3 2 1 5 5 C 1.36935 * 120.00190 * 263.74492 * 4 3 2 6 6 H 1.07997 * 120.00349 * 210.76827 * 5 4 3 7 7 C 1.38817 * 120.00064 * 30.76768 * 5 4 3 8 8 N 1.31625 * 119.99623 * 353.71401 * 7 5 4 9 9 Si 1.86793 * 120.00292 * 173.71186 * 7 5 4 10 10 H 1.48504 * 109.46798 * 60.00412 * 9 7 5 11 11 H 1.48496 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47205 * 300.00380 * 9 7 5 13 13 C 1.46503 * 120.00061 * 83.74960 * 4 3 2 14 14 C 1.53002 * 109.46957 * 269.99931 * 13 4 3 15 15 C 1.50705 * 109.46765 * 179.97438 * 14 13 4 16 16 O 1.21286 * 120.00010 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99278 * 180.27815 * 15 14 13 18 18 C 1.40100 * 119.99740 * 174.88883 * 17 15 14 19 19 C 1.38799 * 120.06558 * 33.92463 * 18 17 15 20 20 C 1.38136 * 119.96684 * 179.75165 * 19 18 17 21 21 C 1.38385 * 120.10000 * 0.53418 * 20 19 18 22 22 Cl 1.73601 * 119.93720 * 179.76774 * 21 20 19 23 23 C 1.38363 * 120.12662 * 359.74146 * 21 20 19 24 24 C 1.38307 * 120.03416 * 359.97438 * 23 21 20 25 25 F 1.35098 * 120.05027 * 179.97438 * 24 23 21 26 26 H 4.40637 * 5.51361 * 179.97438 * 4 1 2 27 27 H 1.09006 * 109.47222 * 287.77561 * 3 2 1 28 28 H 1.09003 * 109.46997 * 167.78235 * 3 2 1 29 29 H 0.96994 * 119.99963 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.47430 * 149.99549 * 13 4 3 31 31 H 1.09002 * 109.46671 * 29.99654 * 13 4 3 32 32 H 1.09001 * 109.47105 * 59.99851 * 14 13 4 33 33 H 1.08995 * 109.46823 * 299.99974 * 14 13 4 34 34 H 0.96999 * 120.00585 * 354.87936 * 17 15 14 35 35 H 1.07998 * 120.01606 * 0.02810 * 19 18 17 36 36 H 1.08004 * 119.95204 * 180.28000 * 20 19 18 37 37 H 1.08008 * 119.98226 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.9273 -1.0228 5 6 3.4854 -2.2050 -0.6769 6 1 4.2628 -2.7184 -1.2232 7 6 2.8416 -2.8404 0.3762 8 7 1.9834 -2.1754 1.1203 9 14 3.1933 -4.6391 0.7371 10 1 4.6363 -4.8095 1.0436 11 1 2.3850 -5.0771 1.9033 12 1 2.8386 -5.4603 -0.4482 13 6 3.2485 -0.4883 -2.4159 14 6 1.9364 -0.7736 -3.1493 15 6 2.0532 -0.3215 -4.5821 16 8 3.0843 0.1801 -4.9776 17 7 1.0098 -0.4689 -5.4223 18 6 1.0794 0.0474 -6.7229 19 6 2.2900 0.0612 -7.4017 20 6 2.3552 0.5659 -8.6859 21 6 1.2175 1.0682 -9.2928 22 17 1.3056 1.7071 -10.9046 23 6 0.0098 1.0616 -8.6177 24 6 -0.0629 0.5522 -7.3340 25 9 -1.2419 0.5461 -6.6743 26 1 -1.0498 -0.0003 -0.0001 27 1 3.0096 -0.3129 0.9786 28 1 3.0089 1.0052 -0.2175 29 1 1.5333 -2.6194 1.8558 30 1 4.0612 -1.0282 -2.9018 31 1 3.4552 0.5816 -2.4439 32 1 1.1237 -0.2337 -2.6633 33 1 1.7297 -1.8434 -3.1211 34 1 0.2107 -0.9325 -5.1267 35 1 3.1795 -0.3266 -6.9278 36 1 3.2965 0.5724 -9.2155 37 1 -0.8767 1.4546 -9.0935 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281334164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:21 Heat of formation + Delta-G solvation = 7.795078 kcal Electronic energy + Delta-G solvation = -23978.882187 eV Core-core repulsion = 20084.689717 eV Total energy + Delta-G solvation = -3894.192471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08865 -41.63006 -39.72830 -38.00338 -37.51765 -35.82505 -33.90180 -33.35553 -31.96872 -31.58252 -30.09186 -27.91662 -26.22356 -24.55522 -23.73835 -22.57129 -21.36973 -19.41171 -19.27749 -18.57107 -18.41829 -18.00512 -17.40249 -16.88087 -16.67014 -16.51085 -16.38251 -15.59687 -15.36990 -15.22756 -14.92700 -14.63540 -14.44869 -14.31694 -13.87603 -13.45247 -13.18065 -13.13416 -13.00860 -12.93879 -12.74744 -12.57167 -12.24771 -12.13785 -12.05361 -11.77923 -11.34119 -11.04368 -10.90447 -10.56854 -10.17232 -10.07071 -9.26030 -8.79706 -7.84063 -5.38786 -0.24230 -0.03163 0.96885 1.41836 1.49826 1.51279 1.56902 1.82619 2.34639 2.37449 2.54118 2.64649 2.99806 3.31496 3.53175 3.62944 3.87050 3.97264 4.05310 4.14069 4.26094 4.29893 4.41217 4.49304 4.79673 4.86291 4.91281 4.98551 5.02278 5.06054 5.16670 5.31312 5.43353 5.64254 5.68290 5.73631 6.17000 6.38109 6.94190 7.15015 7.39525 7.80844 8.28836 9.16459 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.002612 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.128568 B =10715.674662 C =11126.988717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.118 4.118 3 C 0.266 3.734 4 N -0.599 5.599 5 C -0.277 4.277 6 H 0.071 0.929 7 C -0.031 4.031 8 N -0.910 5.910 9 Si 0.960 3.040 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.280 1.280 13 C 0.169 3.831 14 C -0.144 4.144 15 C 0.530 3.470 16 O -0.544 6.544 17 N -0.668 5.668 18 C 0.113 3.887 19 C -0.097 4.097 20 C -0.091 4.091 21 C -0.030 4.030 22 Cl -0.049 7.049 23 C -0.121 4.121 24 C 0.074 3.926 25 F -0.133 7.133 26 H 0.219 0.781 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.249 0.751 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.425 0.575 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 5.991 -20.322 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.121 4.121 3 C 0.141 3.859 4 N -0.320 5.320 5 C -0.406 4.406 6 H 0.088 0.912 7 C -0.228 4.228 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.206 1.206 13 C 0.043 3.957 14 C -0.186 4.186 15 C 0.320 3.680 16 O -0.420 6.420 17 N -0.314 5.314 18 C 0.016 3.984 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.057 4.057 22 Cl -0.020 7.020 23 C -0.141 4.141 24 C 0.052 3.948 25 F -0.112 7.112 26 H 0.236 0.764 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.263 0.737 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.764 6.326 -20.458 21.742 hybrid contribution -1.012 -1.347 0.809 1.869 sum -4.777 4.980 -19.649 20.826 Atomic orbital electron populations 1.24903 0.96212 1.06587 1.04524 1.24532 0.95838 0.95047 0.96645 1.17779 0.83151 0.90807 0.94161 1.44119 1.75133 1.10603 1.02114 1.19360 1.14881 0.90729 1.15668 0.91150 1.25867 0.96852 1.00860 0.99203 1.70112 1.30273 1.35465 1.19477 0.85469 0.77347 0.81499 0.76796 1.20443 1.22419 1.20563 1.20660 0.93601 0.98054 0.83431 1.22283 1.03697 1.03329 0.89300 1.21236 0.82230 0.76505 0.88028 1.90631 1.29411 1.43888 1.78106 1.43609 1.20494 1.56937 1.10375 1.18116 0.94398 0.99756 0.86087 1.21263 0.97223 0.99719 0.93542 1.21253 0.98839 0.97036 0.93931 1.20632 0.94448 1.02231 0.88427 1.98389 1.98557 1.84926 1.20142 1.20978 0.99366 1.01355 0.92394 1.17294 0.80845 1.04077 0.92553 1.91511 1.44483 1.94664 1.80548 0.76394 0.90482 0.93037 0.94143 0.93007 0.92954 0.89291 0.89025 0.73722 0.83269 0.81911 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.74 19.25 74.32 1.43 -11.31 16 2 C -0.12 -5.42 10.35 31.12 0.32 -5.10 16 3 C 0.27 12.34 5.44 84.57 0.46 12.80 16 4 N -0.60 -28.15 2.50 -712.54 -1.78 -29.93 16 5 C -0.28 -14.19 9.59 84.04 0.81 -13.38 16 6 H 0.07 3.55 7.84 -2.91 -0.02 3.53 16 7 C -0.03 -1.59 5.36 84.86 0.45 -1.14 16 8 N -0.91 -49.57 8.87 21.65 0.19 -49.38 16 9 Si 0.96 42.77 29.56 68.60 2.03 44.80 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 13 C 0.17 6.72 4.98 86.38 0.43 7.15 16 14 C -0.14 -4.93 5.88 29.85 0.18 -4.76 16 15 C 0.53 16.26 7.68 87.66 0.67 16.94 16 16 O -0.54 -18.87 13.35 -3.05 -0.04 -18.91 16 17 N -0.67 -16.73 5.23 -303.30 -1.59 -18.32 16 18 C 0.11 2.68 6.33 38.14 0.24 2.92 16 19 C -0.10 -2.21 8.71 22.38 0.19 -2.02 16 20 C -0.09 -1.64 9.82 22.28 0.22 -1.42 16 21 C -0.03 -0.51 6.32 22.33 0.14 -0.36 16 22 Cl -0.05 -0.73 28.95 -2.72 -0.08 -0.81 16 23 C -0.12 -2.10 9.80 22.32 0.22 -1.88 16 24 C 0.07 1.57 7.31 22.48 0.16 1.74 16 25 F -0.13 -2.94 16.95 44.97 0.76 -2.18 16 26 H 0.22 7.41 7.80 -4.43 -0.03 7.38 16 27 H 0.08 4.00 6.54 -2.38 -0.02 3.98 16 28 H 0.05 2.12 7.98 -2.39 -0.02 2.10 16 29 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 30 H 0.05 2.09 8.00 -2.39 -0.02 2.07 16 31 H 0.05 2.01 7.91 -2.39 -0.02 1.99 16 32 H 0.09 3.16 7.18 -2.39 -0.02 3.14 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.42 8.96 8.65 -92.71 -0.80 8.16 16 35 H 0.15 3.83 6.13 -2.91 -0.02 3.81 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -59.54 344.14 5.74 -53.80 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.32 Total: 20.73 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.93 Total: 0.19 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -3.18 Total: -97.63 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.76 Total: -2.18 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -59.54 5.74 -53.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281334164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.598 kcal (2) G-P(sol) polarization free energy of solvation -59.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds