Wall clock time and date at job start Tue Mar 31 2020 14:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48501 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47013 * 299.99593 * 3 2 1 6 6 H 1.48496 * 109.47606 * 59.99679 * 3 2 1 7 7 C 1.37876 * 120.00610 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00571 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99632 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46572 * 299.99441 * 9 7 2 11 11 O 1.42895 * 109.47233 * 59.99386 * 9 7 2 12 12 C 1.53003 * 109.47078 * 179.97438 * 9 7 2 13 13 S 1.80995 * 109.46898 * 179.97438 * 12 9 7 14 14 C 1.76201 * 99.99812 * 179.97438 * 13 12 9 15 15 N 1.31422 * 126.38579 * 0.12942 * 14 13 12 16 16 N 1.28500 * 110.08631 * 180.29465 * 15 14 13 17 17 C 1.31269 * 109.96813 * 359.74595 * 16 15 14 18 18 C 1.47834 * 126.46918 * 179.97438 * 17 16 15 19 19 C 1.39586 * 120.11699 * 164.74799 * 18 17 16 20 20 C 1.37920 * 119.87429 * 179.79127 * 19 18 17 21 21 C 1.38581 * 120.11946 * 0.46675 * 20 19 18 22 22 F 1.35105 * 119.87758 * 179.76537 * 21 20 19 23 23 C 1.38582 * 120.24272 * 359.78831 * 21 20 19 24 24 C 1.37910 * 120.11870 * 359.97438 * 23 21 20 25 25 N 1.36595 * 126.38497 * 180.02562 * 14 13 12 26 26 N 1.36605 * 127.17314 * 359.97438 * 25 14 13 27 27 H 0.96996 * 120.00690 * 0.02562 * 1 2 3 28 28 H 0.96704 * 114.00024 * 60.00931 * 11 9 7 29 29 H 1.09001 * 109.47050 * 59.99979 * 12 9 7 30 30 H 1.08997 * 109.46654 * 300.00064 * 12 9 7 31 31 H 1.07993 * 120.06262 * 0.02562 * 19 18 17 32 32 H 1.08003 * 119.93675 * 180.23133 * 20 19 18 33 33 H 1.07999 * 119.93891 * 179.97438 * 23 21 20 34 34 H 1.07999 * 120.06224 * 180.02562 * 24 23 21 35 35 H 1.00896 * 111.00330 * 269.68252 * 26 25 14 36 36 H 1.00902 * 111.00023 * 33.64502 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4300 -2.5751 -1.1664 12 6 2.2455 -3.6620 0.0005 13 16 1.3405 -5.2295 0.0013 14 6 2.6903 -6.3621 0.0004 15 7 3.9676 -6.0527 0.0018 16 7 4.6806 -7.1217 -0.0056 17 6 3.9030 -8.1792 -0.0068 18 6 4.3402 -9.5914 -0.0151 19 6 3.4360 -10.6064 0.3021 20 6 3.8481 -11.9225 0.2886 21 6 5.1597 -12.2373 -0.0297 22 9 5.5594 -13.5278 -0.0368 23 6 6.0628 -11.2331 -0.3402 24 6 5.6602 -9.9141 -0.3345 25 7 2.6043 -7.7253 0.0001 26 7 1.4659 -8.4805 0.0008 27 1 -0.4851 0.8400 -0.0004 28 1 0.9223 -2.5300 -1.9975 29 1 2.8721 -3.6043 0.8905 30 1 2.8721 -3.6042 -0.8894 31 1 2.4147 -10.3619 0.5539 32 1 3.1484 -12.7089 0.5302 33 1 7.0839 -11.4840 -0.5871 34 1 6.3647 -9.1323 -0.5771 35 1 1.1683 -8.6850 0.9429 36 1 0.7306 -8.0267 -0.5203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287447153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:43 Heat of formation + Delta-G solvation = 31.297941 kcal Electronic energy + Delta-G solvation = -23364.237912 eV Core-core repulsion = 19505.401059 eV Total energy + Delta-G solvation = -3858.836853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.24658 -42.94521 -39.16978 -36.67563 -36.05203 -32.53098 -32.28242 -31.54813 -30.05341 -29.82606 -29.04130 -25.49967 -23.88968 -23.80294 -22.50393 -21.39865 -21.06355 -18.86769 -18.02174 -17.68525 -17.32179 -16.82487 -16.59032 -16.12094 -15.92727 -15.25789 -14.73589 -14.60414 -14.46991 -14.25484 -13.94576 -13.90101 -13.51854 -12.98385 -12.84649 -12.55811 -11.96602 -11.76175 -11.62522 -11.42909 -11.33012 -11.00781 -10.99035 -10.72645 -10.37866 -10.32152 -10.09150 -9.85540 -9.50994 -9.32379 -8.80260 -8.72720 -8.45215 -7.41442 -6.16148 -4.35923 0.34797 0.87512 1.13691 1.67211 2.03166 2.49636 2.64140 3.20861 3.29679 3.34136 3.36295 3.68558 3.86901 4.29367 4.32024 4.42076 4.49504 4.81237 4.89150 5.11492 5.22003 5.24829 5.45324 5.56474 5.66503 5.72170 5.73932 5.87198 5.89743 6.04908 6.08295 6.16048 6.44137 6.55287 7.14483 7.40188 7.68618 7.92103 8.47351 8.65562 9.15475 9.40273 10.88014 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.037376 B = 0.002284 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.969071 B =12255.469134 C =12883.539019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.568 4.568 8 H 0.063 0.937 9 C 0.244 3.756 10 H 0.067 0.933 11 O -0.560 6.560 12 C -0.107 4.107 13 S -0.011 6.011 14 C 0.140 3.860 15 N -0.278 5.278 16 N -0.263 5.263 17 C 0.235 3.765 18 C -0.017 4.017 19 C -0.063 4.063 20 C -0.155 4.155 21 C 0.107 3.893 22 F -0.139 7.139 23 C -0.154 4.154 24 C -0.049 4.049 25 N -0.309 5.309 26 N -0.583 5.583 27 H 0.263 0.737 28 H 0.350 0.650 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.364 0.636 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -23.094 0.426 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.608 4.608 8 H 0.081 0.919 9 C 0.183 3.817 10 H 0.085 0.915 11 O -0.363 6.363 12 C -0.256 4.256 13 S 0.219 5.781 14 C -0.234 4.234 15 N -0.124 5.124 16 N -0.105 5.105 17 C -0.031 4.031 18 C -0.020 4.020 19 C -0.083 4.083 20 C -0.174 4.174 21 C 0.087 3.913 22 F -0.117 7.117 23 C -0.173 4.173 24 C -0.069 4.069 25 N -0.092 5.092 26 N -0.215 5.215 27 H 0.073 0.927 28 H 0.195 0.805 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.579 -22.954 0.526 23.412 hybrid contribution 0.520 0.917 0.126 1.062 sum 5.099 -22.037 0.651 22.628 Atomic orbital electron populations 1.70074 1.05989 1.26791 1.46323 1.25035 0.94793 0.99329 0.93480 0.86495 0.80272 0.83163 0.77804 1.19466 1.20728 1.20734 1.21504 0.93459 0.90179 1.55656 0.91893 1.19290 0.87486 0.87884 0.86994 0.91497 1.86583 1.38260 1.96013 1.15426 1.24982 1.03020 0.91043 1.06545 1.85863 1.01681 0.99151 1.91381 1.28058 1.01809 0.86370 1.07174 1.74814 0.98091 1.19359 1.20104 1.74389 1.24790 0.93858 1.17466 1.22595 0.78435 0.95508 1.06580 1.17442 0.94321 0.86588 1.03691 1.21281 1.00000 0.90814 0.96186 1.21044 0.94737 0.97569 1.04072 1.17895 0.93616 0.78461 1.01316 1.91513 1.91229 1.35013 1.93963 1.21075 1.00455 0.91886 1.03895 1.21093 0.94519 0.96034 0.95290 1.45161 1.04285 1.02712 1.57060 1.59878 1.01356 1.38550 1.21713 0.92743 0.80528 0.88754 0.89243 0.83669 0.84205 0.84000 0.83561 0.81845 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.17 12.84 55.43 0.71 -23.46 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.57 -14.79 8.76 -34.44 -0.30 -15.09 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.24 5.75 2.87 -27.88 -0.08 5.67 16 10 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 11 O -0.56 -13.33 12.32 -35.23 -0.43 -13.76 16 12 C -0.11 -2.10 4.86 37.16 0.18 -1.92 16 13 S -0.01 -0.17 21.60 -107.50 -2.32 -2.50 16 14 C 0.14 2.26 8.13 -88.17 -0.72 1.54 16 15 N -0.28 -5.13 11.59 30.71 0.36 -4.77 16 16 N -0.26 -4.46 11.96 32.59 0.39 -4.07 16 17 C 0.23 3.29 7.80 -153.76 -1.20 2.09 16 18 C -0.02 -0.19 5.87 -104.97 -0.62 -0.81 16 19 C -0.06 -0.55 9.46 -39.20 -0.37 -0.92 16 20 C -0.16 -1.22 10.01 -39.57 -0.40 -1.62 16 21 C 0.11 0.94 7.30 -39.33 -0.29 0.65 16 22 F -0.14 -1.28 17.26 2.25 0.04 -1.24 16 23 C -0.15 -1.29 10.01 -39.57 -0.40 -1.69 16 24 C -0.05 -0.48 9.70 -39.20 -0.38 -0.86 16 25 N -0.31 -4.05 3.83 -10.37 -0.04 -4.09 16 26 N -0.58 -5.03 8.23 60.35 0.50 -4.54 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.35 7.42 9.04 45.56 0.41 7.83 16 29 H 0.09 1.88 8.14 -51.91 -0.42 1.46 16 30 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 31 H 0.15 1.05 5.74 -52.49 -0.30 0.75 16 32 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.15 1.39 7.94 -52.49 -0.42 0.98 16 35 H 0.36 2.24 8.90 -181.37 -1.61 0.63 16 36 H 0.38 2.99 8.79 -181.36 -1.59 1.40 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -31.50 337.66 -10.56 -42.06 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.17 Total: 6.71 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -4.66 Total: -10.89 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 1.91 Total: -40.93 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.43 Total: -13.76 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.32 Total: -2.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.50 -10.56 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287447153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.358 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds