Wall clock time and date at job start Tue Mar 31 2020 14:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48501 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47013 * 299.99593 * 3 2 1 6 6 H 1.48496 * 109.47606 * 59.99679 * 3 2 1 7 7 C 1.37876 * 120.00610 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00571 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99632 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46572 * 299.99441 * 9 7 2 11 11 O 1.42895 * 109.47233 * 59.99386 * 9 7 2 12 12 C 1.53003 * 109.47078 * 179.97438 * 9 7 2 13 13 S 1.80995 * 109.46898 * 179.97438 * 12 9 7 14 14 C 1.76201 * 99.99812 * 179.97438 * 13 12 9 15 15 N 1.31422 * 126.38579 * 0.12942 * 14 13 12 16 16 N 1.28500 * 110.08631 * 180.29465 * 15 14 13 17 17 C 1.31269 * 109.96813 * 359.74595 * 16 15 14 18 18 C 1.47834 * 126.46918 * 179.97438 * 17 16 15 19 19 C 1.39586 * 120.11699 * 164.74799 * 18 17 16 20 20 C 1.37920 * 119.87429 * 179.79127 * 19 18 17 21 21 C 1.38581 * 120.11946 * 0.46675 * 20 19 18 22 22 F 1.35105 * 119.87758 * 179.76537 * 21 20 19 23 23 C 1.38582 * 120.24272 * 359.78831 * 21 20 19 24 24 C 1.37910 * 120.11870 * 359.97438 * 23 21 20 25 25 N 1.36595 * 126.38497 * 180.02562 * 14 13 12 26 26 N 1.36605 * 127.17314 * 359.97438 * 25 14 13 27 27 H 0.96996 * 120.00690 * 0.02562 * 1 2 3 28 28 H 0.96704 * 114.00024 * 60.00931 * 11 9 7 29 29 H 1.09001 * 109.47050 * 59.99979 * 12 9 7 30 30 H 1.08997 * 109.46654 * 300.00064 * 12 9 7 31 31 H 1.07993 * 120.06262 * 0.02562 * 19 18 17 32 32 H 1.08003 * 119.93675 * 180.23133 * 20 19 18 33 33 H 1.07999 * 119.93891 * 179.97438 * 23 21 20 34 34 H 1.07999 * 120.06224 * 180.02562 * 24 23 21 35 35 H 1.00896 * 111.00330 * 269.68252 * 26 25 14 36 36 H 1.00902 * 111.00023 * 33.64502 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4300 -2.5751 -1.1664 12 6 2.2455 -3.6620 0.0005 13 16 1.3405 -5.2295 0.0013 14 6 2.6903 -6.3621 0.0004 15 7 3.9676 -6.0527 0.0018 16 7 4.6806 -7.1217 -0.0056 17 6 3.9030 -8.1792 -0.0068 18 6 4.3402 -9.5914 -0.0151 19 6 3.4360 -10.6064 0.3021 20 6 3.8481 -11.9225 0.2886 21 6 5.1597 -12.2373 -0.0297 22 9 5.5594 -13.5278 -0.0368 23 6 6.0628 -11.2331 -0.3402 24 6 5.6602 -9.9141 -0.3345 25 7 2.6043 -7.7253 0.0001 26 7 1.4659 -8.4805 0.0008 27 1 -0.4851 0.8400 -0.0004 28 1 0.9223 -2.5300 -1.9975 29 1 2.8721 -3.6043 0.8905 30 1 2.8721 -3.6042 -0.8894 31 1 2.4147 -10.3619 0.5539 32 1 3.1484 -12.7089 0.5302 33 1 7.0839 -11.4840 -0.5871 34 1 6.3647 -9.1323 -0.5771 35 1 1.1683 -8.6850 0.9429 36 1 0.7306 -8.0267 -0.5203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287447153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:42 Heat of formation + Delta-G solvation = 10.885116 kcal Electronic energy + Delta-G solvation = -23365.123079 eV Core-core repulsion = 19505.401059 eV Total energy + Delta-G solvation = -3859.722019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.94927 -44.07740 -39.89497 -37.98799 -37.60601 -34.31239 -33.47154 -32.22703 -31.72671 -30.87393 -30.06251 -27.42388 -24.86713 -24.68670 -23.47677 -22.96197 -22.18012 -19.91204 -19.27557 -18.76634 -18.55362 -17.87284 -17.51664 -16.98846 -16.72186 -16.62900 -16.36060 -16.27917 -15.96462 -15.50757 -15.24272 -14.57738 -14.37029 -14.21934 -13.77290 -13.65597 -13.45539 -13.34446 -13.09442 -12.83199 -12.81474 -12.53090 -12.21521 -12.06186 -11.90018 -11.61837 -11.45922 -11.17409 -10.80160 -10.74955 -10.36815 -10.17118 -9.67929 -8.68130 -8.19354 -6.45178 -0.48571 -0.13473 0.21442 0.62170 0.99377 1.04610 1.40250 1.43323 1.52836 1.54780 2.38413 2.59791 2.79918 3.07710 3.18001 3.46228 3.65968 3.88199 3.92763 4.03494 4.11320 4.19278 4.21370 4.24203 4.44279 4.59154 4.83463 4.89249 4.93591 5.06503 5.15186 5.34650 5.47164 5.47954 5.63839 5.76556 5.94301 6.21975 6.63580 7.26406 7.29644 7.42518 8.85212 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.037376 B = 0.002284 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.969071 B =12255.469134 C =12883.539019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.582 4.582 8 H 0.061 0.939 9 C 0.247 3.753 10 H 0.040 0.960 11 O -0.570 6.570 12 C -0.102 4.102 13 S 0.028 5.972 14 C 0.125 3.875 15 N -0.315 5.315 16 N -0.300 5.300 17 C 0.252 3.748 18 C -0.043 4.043 19 C -0.054 4.054 20 C -0.149 4.149 21 C 0.105 3.895 22 F -0.140 7.140 23 C -0.151 4.151 24 C -0.054 4.054 25 N -0.303 5.303 26 N -0.570 5.570 27 H 0.264 0.736 28 H 0.361 0.639 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.381 0.619 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 -25.223 0.398 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.621 4.621 8 H 0.079 0.921 9 C 0.188 3.812 10 H 0.058 0.942 11 O -0.375 6.375 12 C -0.251 4.251 13 S 0.258 5.742 14 C -0.251 4.251 15 N -0.160 5.160 16 N -0.142 5.142 17 C -0.015 4.015 18 C -0.046 4.046 19 C -0.074 4.074 20 C -0.168 4.168 21 C 0.085 3.915 22 F -0.119 7.119 23 C -0.170 4.170 24 C -0.074 4.074 25 N -0.084 5.084 26 N -0.205 5.205 27 H 0.073 0.927 28 H 0.207 0.793 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.201 0.799 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.679 -25.097 0.502 25.535 hybrid contribution 0.500 1.306 0.130 1.405 sum 5.180 -23.791 0.632 24.357 Atomic orbital electron populations 1.70181 1.07441 1.27660 1.47730 1.25829 0.95534 1.02706 0.93133 0.85485 0.79046 0.79078 0.77843 1.19038 1.20311 1.20334 1.21864 0.93610 0.91669 1.55000 0.92067 1.18992 0.87302 0.88922 0.86027 0.94214 1.86520 1.38814 1.96120 1.15998 1.24474 1.02017 0.92580 1.06037 1.85486 1.00196 0.96666 1.91878 1.27928 1.01170 0.87781 1.08238 1.74703 0.99251 1.20807 1.21232 1.74300 1.25694 0.94367 1.19792 1.23096 0.78330 0.96181 1.03897 1.17590 0.95425 0.85443 1.06180 1.21424 1.00236 0.90562 0.95226 1.21304 0.94834 0.97765 1.02851 1.18086 0.94103 0.78367 1.00916 1.91516 1.91301 1.35138 1.93922 1.21238 1.01478 0.91107 1.03164 1.21125 0.94158 0.96664 0.95424 1.45182 1.05434 1.01766 1.55991 1.60003 1.00494 1.36870 1.23160 0.92661 0.79324 0.89492 0.89600 0.82157 0.81581 0.82068 0.83977 0.79857 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.12 12.84 21.45 0.28 -50.84 16 2 C 0.03 1.70 5.40 84.66 0.46 2.16 16 3 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.58 -30.78 8.76 25.60 0.22 -30.56 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.25 11.94 2.87 29.85 0.09 12.03 16 10 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 11 O -0.57 -27.47 12.32 -148.98 -1.84 -29.31 16 12 C -0.10 -4.07 4.86 71.98 0.35 -3.72 16 13 S 0.03 0.91 21.60 -56.49 -1.22 -0.31 16 14 C 0.12 3.98 8.13 179.49 1.46 5.44 16 15 N -0.31 -11.76 11.59 -56.74 -0.66 -12.42 16 16 N -0.30 -10.28 11.96 -50.80 -0.61 -10.89 16 17 C 0.25 6.87 7.80 136.20 1.06 7.93 16 18 C -0.04 -0.89 5.87 -20.09 -0.12 -1.01 16 19 C -0.05 -0.80 9.46 22.52 0.21 -0.59 16 20 C -0.15 -1.86 10.01 22.28 0.22 -1.64 16 21 C 0.11 1.55 7.30 22.43 0.16 1.72 16 22 F -0.14 -2.22 17.26 44.97 0.78 -1.44 16 23 C -0.15 -2.21 10.01 22.27 0.22 -1.99 16 24 C -0.05 -0.99 9.70 22.52 0.22 -0.77 16 25 N -0.30 -7.54 3.83 -186.72 -0.72 -8.26 16 26 N -0.57 -8.49 8.23 37.02 0.30 -8.19 16 27 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.36 15.43 9.04 -74.05 -0.67 14.76 16 29 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.09 3.47 8.14 -2.40 -0.02 3.45 16 31 H 0.16 1.79 5.74 -2.91 -0.02 1.77 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.14 2.69 7.94 -2.91 -0.02 2.66 16 35 H 0.38 3.60 8.90 -210.56 -1.87 1.73 16 36 H 0.39 5.16 8.79 -210.55 -1.85 3.31 16 Total: -1.00 -68.46 337.66 -0.30 -68.76 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -3.21 Total: 19.56 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 4.56 Total: -10.99 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -1.40 Total: -90.59 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.84 Total: -29.31 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.78 Total: -1.44 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.22 Total: -0.31 kcal Total: -68.46 -0.30 -68.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287447153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.645 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds