Wall clock time and date at job start Tue Mar 31 2020 13:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 69.51677 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46956 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47226 * 210.00189 * 11 9 7 14 14 H 1.48501 * 109.47027 * 329.99834 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38233 * 120.00272 * 264.71901 * 18 17 15 20 20 C 1.38221 * 120.04947 * 179.77163 * 19 18 17 21 21 C 1.38267 * 120.05904 * 0.50792 * 20 19 18 22 22 C 1.38276 * 120.00779 * 359.74929 * 21 20 19 23 23 Cl 1.73604 * 120.02209 * 179.97438 * 22 21 20 24 24 C 1.38395 * 120.00802 * 84.99957 * 18 17 15 25 25 F 1.35104 * 120.03335 * 359.97438 * 24 18 17 26 26 H 1.08997 * 109.47542 * 309.51408 * 3 2 1 27 27 H 1.09004 * 109.47171 * 189.51459 * 3 2 1 28 28 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 29 29 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 30 30 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 31 31 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 32 32 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 34 34 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 35 35 H 1.08008 * 119.97918 * 0.02562 * 19 18 17 36 36 H 1.08004 * 119.97633 * 180.25672 * 20 19 18 37 37 H 1.07996 * 119.99489 * 179.76765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5039 -1.3513 5 7 4.5833 -0.5038 -1.3511 6 6 5.3157 0.6848 -1.7948 7 6 5.5671 0.5953 -3.2780 8 1 5.2160 -0.2611 -3.8345 9 6 6.2453 1.6068 -3.9245 10 7 6.6732 2.6495 -3.2468 11 14 6.5563 1.4962 -5.7632 12 1 5.4264 2.1234 -6.4949 13 1 7.8169 2.2071 -6.0956 14 1 6.6727 0.0701 -6.1606 15 6 5.2572 -1.5972 -0.9426 16 8 6.4700 -1.5969 -0.9421 17 6 4.5037 -2.8221 -0.4921 18 6 5.4831 -3.8969 -0.0963 19 6 5.8489 -4.8688 -1.0088 20 6 6.7507 -5.8523 -0.6484 21 6 7.2805 -5.8719 0.6286 22 6 6.9122 -4.9040 1.5450 23 17 7.5767 -4.9286 3.1487 24 6 6.0121 -3.9146 1.1824 25 9 5.6513 -2.9681 2.0765 26 1 2.9717 -0.6530 0.7928 27 1 2.9709 1.0144 0.1699 28 1 2.7546 0.1498 -2.1440 29 1 2.7554 -1.5176 -1.5212 30 1 4.7265 1.5762 -1.5793 31 1 6.2681 0.7426 -1.2677 32 1 7.1500 3.3612 -3.7017 33 1 3.8769 -2.5690 0.3631 34 1 3.8773 -3.1836 -1.3074 35 1 5.4328 -4.8572 -2.0055 36 1 7.0388 -6.6086 -1.3635 37 1 7.9821 -6.6430 0.9103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290695784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:03 Heat of formation + Delta-G solvation = -37.911144 kcal Electronic energy + Delta-G solvation = -24444.485124 eV Core-core repulsion = 20548.310683 eV Total energy + Delta-G solvation = -3896.174441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.94753 -39.81591 -38.75211 -36.89229 -36.64238 -35.27297 -33.20233 -32.59693 -30.86686 -30.51682 -28.54656 -26.67016 -24.05513 -23.25721 -22.90664 -21.74363 -18.67276 -17.80076 -17.59524 -16.83828 -16.73994 -16.47898 -16.23043 -15.67221 -15.35004 -14.74570 -14.61044 -14.55766 -14.25308 -13.72180 -13.44445 -13.42531 -13.13265 -12.96306 -12.63315 -12.45531 -12.34189 -12.15673 -11.88768 -11.59865 -11.52720 -11.50221 -11.29051 -11.04296 -10.98302 -10.87075 -10.63240 -10.21939 -9.74251 -9.27889 -8.82980 -8.74394 -8.49550 -7.89166 -6.11022 -4.15911 0.88635 0.95552 1.88961 2.71598 2.80383 3.21694 3.26366 3.27517 3.33966 3.37307 3.65652 4.01948 4.19146 4.38229 4.41682 4.64349 4.89613 4.93634 4.97438 5.07224 5.13236 5.18307 5.25237 5.39447 5.42498 5.58606 5.73715 5.80549 5.85374 6.02297 6.04638 6.18761 6.56775 6.89842 7.33315 7.39105 7.56466 7.84551 8.14318 8.20179 8.79105 8.93496 9.49627 10.97177 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.004037 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.448274 B = 6933.840328 C = 8537.459619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.511 3.489 16 O -0.523 6.523 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.073 4.073 23 Cl -0.057 7.057 24 C 0.125 3.875 25 F -0.124 7.124 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -16.015 8.168 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.010 4.010 5 N -0.328 5.328 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.296 3.704 16 O -0.399 6.399 17 C -0.150 4.150 18 C -0.080 4.080 19 C -0.092 4.092 20 C -0.135 4.135 21 C -0.107 4.107 22 C -0.101 4.101 23 Cl -0.028 7.028 24 C 0.104 3.896 25 F -0.102 7.102 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.030 -15.767 8.324 18.279 hybrid contribution 0.650 0.322 -0.726 1.026 sum -3.381 -15.445 7.599 17.542 Atomic orbital electron populations 1.81210 1.13034 1.09300 1.08730 1.29092 0.95080 0.92839 0.93045 1.19915 0.81368 1.06388 1.01694 1.21328 0.82169 1.02353 0.95117 1.48195 1.04847 1.16165 1.63543 1.19364 0.92642 0.80250 0.95116 1.21399 1.36800 1.05494 0.93091 0.92372 1.24918 0.95275 0.95225 0.98533 1.69917 1.38179 1.09048 1.36014 0.86521 0.77732 0.78201 0.85111 1.20638 1.21104 1.19901 1.20052 0.88098 0.83801 0.78410 1.90726 1.13604 1.82066 1.53514 1.20802 0.97427 0.93156 1.03617 1.19382 0.99588 0.97406 0.91638 1.21053 0.96311 0.92862 0.98987 1.21114 0.97269 0.99428 0.95724 1.20926 0.99781 0.97464 0.92555 1.20913 1.00866 0.99266 0.89045 1.98376 1.84495 1.98243 1.21654 1.17162 0.97113 0.87628 0.87658 1.91524 1.89991 1.62185 1.66523 0.87520 0.86416 0.88620 0.90600 0.94668 0.93538 0.92640 0.88001 0.87385 0.84336 0.84398 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.45 18.54 42.15 0.78 -5.67 16 2 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 3 C -0.05 -0.54 6.03 -29.52 -0.18 -0.71 16 4 C 0.12 1.48 5.17 -4.04 -0.02 1.45 16 5 N -0.60 -10.57 2.46 -175.06 -0.43 -11.00 16 6 C 0.24 5.72 5.16 -5.20 -0.03 5.69 16 7 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 11 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.51 9.13 7.67 -10.98 -0.08 9.05 16 16 O -0.52 -12.00 15.61 5.55 0.09 -11.91 16 17 C -0.11 -1.36 4.16 -29.03 -0.12 -1.48 16 18 C -0.08 -1.03 4.38 -104.57 -0.46 -1.49 16 19 C -0.07 -0.82 9.68 -39.59 -0.38 -1.20 16 20 C -0.12 -1.12 10.04 -39.58 -0.40 -1.52 16 21 C -0.09 -0.90 9.83 -39.56 -0.39 -1.29 16 22 C -0.07 -0.92 6.33 -39.44 -0.25 -1.17 16 23 Cl -0.06 -0.67 28.62 -51.86 -1.48 -2.16 16 24 C 0.12 1.74 7.22 -39.39 -0.28 1.46 16 25 F -0.12 -1.84 16.14 2.25 0.04 -1.81 16 26 H 0.11 0.92 7.25 -51.93 -0.38 0.54 16 27 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.29 8.07 -51.93 -0.42 0.88 16 29 H 0.08 0.75 6.43 -51.93 -0.33 0.42 16 30 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.10 1.04 6.86 -51.93 -0.36 0.68 16 34 H 0.11 1.04 7.30 -51.93 -0.38 0.66 16 35 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -33.34 351.29 -7.24 -40.58 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -3.91 Total: -3.10 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.33 Total: -1.54 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 1.09 Total: -41.26 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.34 -7.24 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290695784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.669 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds