Wall clock time and date at job start Tue Mar 31 2020 13:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 69.51677 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46956 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47226 * 210.00189 * 11 9 7 14 14 H 1.48501 * 109.47027 * 329.99834 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38233 * 120.00272 * 264.71901 * 18 17 15 20 20 C 1.38221 * 120.04947 * 179.77163 * 19 18 17 21 21 C 1.38267 * 120.05904 * 0.50792 * 20 19 18 22 22 C 1.38276 * 120.00779 * 359.74929 * 21 20 19 23 23 Cl 1.73604 * 120.02209 * 179.97438 * 22 21 20 24 24 C 1.38395 * 120.00802 * 84.99957 * 18 17 15 25 25 F 1.35104 * 120.03335 * 359.97438 * 24 18 17 26 26 H 1.08997 * 109.47542 * 309.51408 * 3 2 1 27 27 H 1.09004 * 109.47171 * 189.51459 * 3 2 1 28 28 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 29 29 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 30 30 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 31 31 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 32 32 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 34 34 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 35 35 H 1.08008 * 119.97918 * 0.02562 * 19 18 17 36 36 H 1.08004 * 119.97633 * 180.25672 * 20 19 18 37 37 H 1.07996 * 119.99489 * 179.76765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5039 -1.3513 5 7 4.5833 -0.5038 -1.3511 6 6 5.3157 0.6848 -1.7948 7 6 5.5671 0.5953 -3.2780 8 1 5.2160 -0.2611 -3.8345 9 6 6.2453 1.6068 -3.9245 10 7 6.6732 2.6495 -3.2468 11 14 6.5563 1.4962 -5.7632 12 1 5.4264 2.1234 -6.4949 13 1 7.8169 2.2071 -6.0956 14 1 6.6727 0.0701 -6.1606 15 6 5.2572 -1.5972 -0.9426 16 8 6.4700 -1.5969 -0.9421 17 6 4.5037 -2.8221 -0.4921 18 6 5.4831 -3.8969 -0.0963 19 6 5.8489 -4.8688 -1.0088 20 6 6.7507 -5.8523 -0.6484 21 6 7.2805 -5.8719 0.6286 22 6 6.9122 -4.9040 1.5450 23 17 7.5767 -4.9286 3.1487 24 6 6.0121 -3.9146 1.1824 25 9 5.6513 -2.9681 2.0765 26 1 2.9717 -0.6530 0.7928 27 1 2.9709 1.0144 0.1699 28 1 2.7546 0.1498 -2.1440 29 1 2.7554 -1.5176 -1.5212 30 1 4.7265 1.5762 -1.5793 31 1 6.2681 0.7426 -1.2677 32 1 7.1500 3.3612 -3.7017 33 1 3.8769 -2.5690 0.3631 34 1 3.8773 -3.1836 -1.3074 35 1 5.4328 -4.8572 -2.0055 36 1 7.0388 -6.6086 -1.3635 37 1 7.9821 -6.6430 0.9103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290695784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:02 Heat of formation + Delta-G solvation = -56.724772 kcal Electronic energy + Delta-G solvation = -24445.300944 eV Core-core repulsion = 20548.310683 eV Total energy + Delta-G solvation = -3896.990261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.97155 -41.01071 -39.79235 -37.98355 -37.56275 -36.65789 -34.90763 -33.79508 -32.14006 -31.36137 -29.90288 -28.13383 -25.30457 -24.79378 -23.79511 -22.83402 -19.99583 -18.85029 -18.65541 -18.31115 -17.97683 -17.74588 -17.31158 -16.80592 -16.63883 -16.12180 -15.86470 -15.64493 -15.41489 -14.81197 -14.50317 -14.45980 -14.30270 -14.19246 -13.93256 -13.61330 -13.52776 -13.32614 -13.20146 -12.94487 -12.71740 -12.59775 -12.48076 -12.42680 -12.34436 -12.15175 -11.91027 -11.81480 -11.64930 -10.66519 -10.56669 -9.78323 -9.64697 -9.46182 -8.15905 -6.28322 0.02487 0.08531 0.99702 1.41738 1.43993 1.53220 1.68981 1.84576 1.91635 2.24498 2.44081 2.57703 3.13103 3.14547 3.18334 3.47075 3.85898 3.87577 4.04284 4.13120 4.14256 4.22103 4.33251 4.54450 4.56784 4.73968 4.84589 4.94126 5.00096 5.07542 5.14397 5.22432 5.35999 5.36316 5.63034 5.76439 5.89422 6.14600 6.60910 6.75215 6.83649 7.36130 7.52911 8.91069 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.004037 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.448274 B = 6933.840328 C = 8537.459619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.247 3.753 3 C -0.041 4.041 4 C 0.112 3.888 5 N -0.597 5.597 6 C 0.260 3.740 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.959 3.041 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.505 3.495 16 O -0.583 6.583 17 C -0.098 4.098 18 C -0.098 4.098 19 C -0.080 4.080 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.090 4.090 23 Cl -0.061 7.061 24 C 0.095 3.905 25 F -0.138 7.138 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.032 0.968 31 H 0.000 1.000 32 H 0.264 0.736 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -18.280 7.079 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.082 4.082 4 C -0.012 4.012 5 N -0.327 5.327 6 C 0.139 3.861 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.190 4.190 10 N -0.569 5.569 11 Si 0.784 3.216 12 H -0.193 1.193 13 H -0.213 1.213 14 H -0.195 1.195 15 C 0.294 3.706 16 O -0.463 6.463 17 C -0.138 4.138 18 C -0.100 4.100 19 C -0.098 4.098 20 C -0.127 4.127 21 C -0.105 4.105 22 C -0.117 4.117 23 Cl -0.032 7.032 24 C 0.075 3.925 25 F -0.117 7.117 26 H 0.150 0.850 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.191 0.809 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.053 -18.051 7.244 20.096 hybrid contribution 0.998 0.978 -0.366 1.444 sum -4.055 -17.073 6.878 18.848 Atomic orbital electron populations 1.81254 1.14315 1.10846 1.10159 1.29089 0.94857 0.91432 0.91673 1.19843 0.80244 1.06980 1.01132 1.21575 0.78879 1.04649 0.96109 1.48069 1.06823 1.14677 1.63175 1.18792 0.91321 0.82635 0.93398 1.21754 1.36177 1.05125 0.94480 0.92355 1.25758 0.95259 0.95048 1.02901 1.70038 1.39239 1.09865 1.37738 0.85537 0.77706 0.78239 0.80073 1.19279 1.21340 1.19458 1.21008 0.87718 0.84853 0.76992 1.90695 1.16496 1.83207 1.55902 1.20815 0.97179 0.90138 1.05627 1.19581 1.00383 0.98292 0.91701 1.21440 0.96352 0.92569 0.99470 1.21566 0.95846 0.99409 0.95909 1.21326 0.99613 0.97156 0.92411 1.21175 1.01165 0.99907 0.89493 1.98367 1.84492 1.98274 1.22032 1.17528 0.98533 0.88216 0.88270 1.91474 1.90295 1.62861 1.67055 0.85023 0.86443 0.89515 0.86839 0.94977 0.98212 0.92681 0.85569 0.83788 0.82276 0.80889 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.37 18.54 20.00 0.37 -13.00 16 2 C 0.25 5.32 15.43 89.44 1.38 6.70 16 3 C -0.04 -0.75 6.03 28.79 0.17 -0.57 16 4 C 0.11 2.59 5.17 86.38 0.45 3.04 16 5 N -0.60 -20.81 2.46 -826.15 -2.03 -22.84 16 6 C 0.26 12.45 5.16 85.63 0.44 12.89 16 7 C -0.54 -28.38 9.39 25.60 0.24 -28.14 16 8 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.01 0.50 5.46 84.66 0.46 0.97 16 10 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 11 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 C 0.51 17.73 7.67 87.66 0.67 18.40 16 16 O -0.58 -27.34 15.61 -3.04 -0.05 -27.39 16 17 C -0.10 -2.19 4.16 29.10 0.12 -2.06 16 18 C -0.10 -2.39 4.38 -19.83 -0.09 -2.48 16 19 C -0.08 -1.56 9.68 22.26 0.22 -1.34 16 20 C -0.11 -1.74 10.04 22.27 0.22 -1.52 16 21 C -0.09 -1.57 9.83 22.29 0.22 -1.35 16 22 C -0.09 -2.18 6.33 22.36 0.14 -2.04 16 23 Cl -0.06 -1.42 28.62 -2.72 -0.08 -1.50 16 24 C 0.09 2.59 7.22 22.39 0.16 2.75 16 25 F -0.14 -4.14 16.14 44.97 0.73 -3.41 16 26 H 0.13 1.85 7.25 -2.39 -0.02 1.83 16 27 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.09 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.11 1.79 6.43 -2.39 -0.02 1.78 16 30 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 31 H 0.00 -0.01 7.42 -2.38 -0.02 -0.03 16 32 H 0.26 14.56 8.31 -92.72 -0.77 13.79 16 33 H 0.13 2.17 6.86 -2.38 -0.02 2.15 16 34 H 0.14 2.12 7.30 -2.39 -0.02 2.11 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -76.27 351.29 7.18 -69.09 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.12 Total: 2.50 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.81 Total: 5.23 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.37 Total: -89.43 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.73 Total: -3.41 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -76.27 7.18 -69.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290695784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.363 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds