Wall clock time and date at job start Tue Mar 31 2020 14:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00377 * 2 1 4 4 O 1.20822 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00211 * 179.97438 * 3 2 1 6 6 S 1.81391 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76201 * 102.99971 * 180.02562 * 6 5 3 8 8 C 1.38947 * 120.02773 * 180.02562 * 7 6 5 9 9 C 1.38058 * 119.97620 * 180.02562 * 8 7 6 10 10 C 1.38734 * 120.02569 * 359.97438 * 9 8 7 11 11 O 1.35998 * 119.97568 * 179.97438 * 10 9 8 12 12 C 1.34235 * 117.00040 * 77.09517 * 11 10 9 13 13 O 1.20833 * 119.99891 * 355.09239 * 12 11 10 14 14 C 1.50699 * 120.00444 * 175.08457 * 12 11 10 15 15 C 1.53003 * 109.47285 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46930 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00223 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47301 * 59.99457 * 20 18 16 22 22 H 1.48499 * 109.47437 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46552 * 299.99931 * 20 18 16 24 24 C 1.38739 * 120.04938 * 0.25958 * 10 9 8 25 25 C 1.38059 * 120.02474 * 359.48669 * 24 10 9 26 26 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46722 * 300.00288 * 1 2 3 28 28 H 1.09001 * 109.47045 * 59.99740 * 1 2 3 29 29 H 1.09006 * 109.46540 * 59.99618 * 5 3 2 30 30 H 1.09001 * 109.47188 * 300.00199 * 5 3 2 31 31 H 1.08000 * 120.00867 * 359.97438 * 8 7 6 32 32 H 1.08007 * 119.98402 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47062 * 300.00775 * 14 12 11 34 34 H 1.09002 * 109.46659 * 60.00525 * 14 12 11 35 35 H 1.08996 * 109.46968 * 300.00638 * 15 14 12 36 36 H 1.09002 * 109.46909 * 60.00598 * 15 14 12 37 37 H 0.96996 * 119.99957 * 180.02562 * 19 18 16 38 38 H 1.07994 * 119.98520 * 179.71692 * 24 10 9 39 39 H 1.07993 * 120.01513 * 180.22991 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 16 4.0808 3.0142 -0.0003 7 6 5.8396 2.9074 -0.0003 8 6 6.6065 4.0660 -0.0004 9 6 7.9845 3.9811 -0.0009 10 6 8.6035 2.7395 -0.0008 11 8 9.9610 2.6571 -0.0018 12 6 10.5864 2.8873 1.1635 13 8 9.9527 3.2401 2.1299 14 6 12.0789 2.7057 1.2665 15 6 12.5350 3.0297 2.6905 16 6 14.0276 2.8486 2.7933 17 1 14.5941 2.5343 1.9292 18 6 14.6697 3.0842 3.9903 19 7 13.9797 3.4664 5.0427 20 14 16.5200 2.8605 4.1176 21 1 17.1960 3.7742 3.1619 22 1 16.9626 3.1736 5.5001 23 1 16.8721 1.4550 3.7920 24 6 7.8388 1.5820 -0.0056 25 6 6.4607 1.6644 0.0002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7803 -0.8892 30 1 3.9558 0.7807 0.8908 31 1 6.1248 5.0326 -0.0009 32 1 8.5808 4.8817 -0.0013 33 1 12.3365 1.6736 1.0287 34 1 12.5756 3.3752 0.5643 35 1 12.2772 4.0616 2.9286 36 1 12.0383 2.3598 3.3924 37 1 14.4316 3.6325 5.8847 38 1 8.3217 0.6160 -0.0101 39 1 5.8656 0.7633 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291388865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:52 Heat of formation + Delta-G solvation = -138.163266 kcal Electronic energy + Delta-G solvation = -23044.056365 eV Core-core repulsion = 19236.745926 eV Total energy + Delta-G solvation = -3807.310439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02079 -40.95472 -38.68171 -37.08462 -36.51961 -33.65445 -31.96550 -31.34711 -30.94886 -30.23438 -27.80342 -26.26931 -23.73530 -23.24096 -21.88248 -21.73118 -20.04953 -18.59773 -18.05676 -17.87981 -17.22805 -17.01059 -16.81736 -16.44626 -15.81508 -15.20327 -14.79174 -14.77855 -14.73729 -14.49929 -14.06539 -13.66869 -13.46756 -13.24707 -13.04221 -12.82266 -12.65482 -12.33469 -12.15699 -11.86367 -11.38014 -11.33368 -11.15989 -10.97941 -10.78828 -10.70530 -10.58025 -10.18101 -10.11919 -9.85363 -9.53643 -9.25970 -9.24535 -8.41563 -7.66582 -6.05290 -4.10886 0.69840 0.78817 1.10542 1.56608 1.88056 2.20810 2.61059 2.93714 3.30580 3.35537 3.37212 3.62356 4.10640 4.27436 4.40865 4.49319 4.57748 4.60291 4.63508 4.67406 4.98205 5.00766 5.09780 5.22215 5.30115 5.57431 5.70412 5.73270 5.86663 5.96043 6.01421 6.11133 6.21619 6.38717 6.70558 6.89960 7.07811 7.60646 7.66046 7.92621 8.18349 8.33237 8.95748 9.53545 11.05558 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031700 B = 0.001830 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.070222 B =15293.820392 C =15538.863807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.482 3.518 4 O -0.485 6.485 5 C -0.131 4.131 6 S -0.031 6.031 7 C -0.108 4.108 8 C -0.080 4.080 9 C -0.101 4.101 10 C 0.095 3.905 11 O -0.306 6.306 12 C 0.454 3.546 13 O -0.485 6.485 14 C -0.100 4.100 15 C 0.033 3.967 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.102 4.102 25 C -0.121 4.121 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.136 0.864 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.211 -6.784 -13.842 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.322 3.678 4 O -0.372 6.372 5 C -0.280 4.280 6 S 0.211 5.789 7 C -0.220 4.220 8 C -0.103 4.103 9 C -0.121 4.121 10 C 0.051 3.949 11 O -0.223 6.223 12 C 0.298 3.702 13 O -0.368 6.368 14 C -0.138 4.138 15 C -0.004 4.004 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.122 4.122 25 C -0.145 4.145 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.488 -5.386 -13.324 29.260 hybrid contribution 1.631 -1.207 0.211 2.040 sum -23.857 -6.593 -13.113 28.010 Atomic orbital electron populations 1.23369 0.75259 1.04155 1.02978 1.86475 1.24117 1.32371 1.84070 1.22455 0.90182 0.81992 0.73127 1.90744 1.66445 1.35953 1.44026 1.23386 0.92788 1.02153 1.09645 1.86118 0.96524 1.03387 1.92837 1.21879 0.97339 0.96680 1.06124 1.20542 0.92497 0.97172 1.00090 1.21309 0.94563 0.97476 0.98778 1.18624 0.82105 0.93253 1.00941 1.84750 1.17231 1.82593 1.37731 1.25316 0.92663 0.72993 0.79237 1.90682 1.67731 1.41211 1.37180 1.21836 0.82930 1.04162 1.04823 1.19045 0.95918 0.98420 0.87059 1.21090 0.92110 1.47162 0.96542 0.92270 1.25019 0.98507 0.95002 0.95734 1.69980 1.35834 1.45655 1.01219 0.86586 0.85167 0.78667 0.77141 1.20123 1.21237 1.20148 1.21079 0.93224 0.98217 0.99667 1.20947 0.94534 0.95882 1.03105 0.87620 0.91493 0.91525 0.85041 0.84978 0.84669 0.84622 0.88595 0.88581 0.95479 0.95518 0.92726 0.84572 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.55 10.56 -39.24 -0.41 -2.97 16 3 C 0.48 4.13 7.98 36.01 0.29 4.42 16 4 O -0.49 -5.59 15.61 -18.75 -0.29 -5.89 16 5 C -0.13 -0.91 4.93 36.01 0.18 -0.73 16 6 S -0.03 -0.31 21.06 -107.50 -2.26 -2.57 16 7 C -0.11 -1.20 6.11 -39.06 -0.24 -1.44 16 8 C -0.08 -0.95 9.79 -39.38 -0.39 -1.34 16 9 C -0.10 -1.39 9.56 -39.46 -0.38 -1.77 16 10 C 0.09 1.41 5.13 -39.21 -0.20 1.21 16 11 O -0.31 -5.05 10.02 -23.77 -0.24 -5.29 16 12 C 0.45 8.73 7.83 36.00 0.28 9.01 16 13 O -0.48 -10.89 15.47 -18.76 -0.29 -11.18 16 14 C -0.10 -1.97 5.75 -27.88 -0.16 -2.13 16 15 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 16 C -0.53 -14.54 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.10 -1.27 9.98 -39.46 -0.39 -1.67 16 25 C -0.12 -1.27 9.36 -39.38 -0.37 -1.64 16 26 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 28 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 29 H 0.13 0.62 7.74 -51.92 -0.40 0.22 16 30 H 0.13 0.71 7.75 -51.92 -0.40 0.31 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.13 0.92 5.87 -52.49 -0.31 0.62 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -34.31 361.16 -8.06 -42.37 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.88 Total: -2.73 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.84 Total: -7.37 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.24 Total: -25.33 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.26 Total: -2.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.31 -8.06 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291388865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.797 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds