Wall clock time and date at job start Tue Mar 31 2020 14:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00377 * 2 1 4 4 O 1.20822 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00211 * 179.97438 * 3 2 1 6 6 S 1.81391 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76201 * 102.99971 * 180.02562 * 6 5 3 8 8 C 1.38947 * 120.02773 * 180.02562 * 7 6 5 9 9 C 1.38058 * 119.97620 * 180.02562 * 8 7 6 10 10 C 1.38734 * 120.02569 * 359.97438 * 9 8 7 11 11 O 1.35998 * 119.97568 * 179.97438 * 10 9 8 12 12 C 1.34235 * 117.00040 * 77.09517 * 11 10 9 13 13 O 1.20833 * 119.99891 * 355.09239 * 12 11 10 14 14 C 1.50699 * 120.00444 * 175.08457 * 12 11 10 15 15 C 1.53003 * 109.47285 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46930 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00223 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47301 * 59.99457 * 20 18 16 22 22 H 1.48499 * 109.47437 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46552 * 299.99931 * 20 18 16 24 24 C 1.38739 * 120.04938 * 0.25958 * 10 9 8 25 25 C 1.38059 * 120.02474 * 359.48669 * 24 10 9 26 26 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46722 * 300.00288 * 1 2 3 28 28 H 1.09001 * 109.47045 * 59.99740 * 1 2 3 29 29 H 1.09006 * 109.46540 * 59.99618 * 5 3 2 30 30 H 1.09001 * 109.47188 * 300.00199 * 5 3 2 31 31 H 1.08000 * 120.00867 * 359.97438 * 8 7 6 32 32 H 1.08007 * 119.98402 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47062 * 300.00775 * 14 12 11 34 34 H 1.09002 * 109.46659 * 60.00525 * 14 12 11 35 35 H 1.08996 * 109.46968 * 300.00638 * 15 14 12 36 36 H 1.09002 * 109.46909 * 60.00598 * 15 14 12 37 37 H 0.96996 * 119.99957 * 180.02562 * 19 18 16 38 38 H 1.07994 * 119.98520 * 179.71692 * 24 10 9 39 39 H 1.07993 * 120.01513 * 180.22991 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 16 4.0808 3.0142 -0.0003 7 6 5.8396 2.9074 -0.0003 8 6 6.6065 4.0660 -0.0004 9 6 7.9845 3.9811 -0.0009 10 6 8.6035 2.7395 -0.0008 11 8 9.9610 2.6571 -0.0018 12 6 10.5864 2.8873 1.1635 13 8 9.9527 3.2401 2.1299 14 6 12.0789 2.7057 1.2665 15 6 12.5350 3.0297 2.6905 16 6 14.0276 2.8486 2.7933 17 1 14.5941 2.5343 1.9292 18 6 14.6697 3.0842 3.9903 19 7 13.9797 3.4664 5.0427 20 14 16.5200 2.8605 4.1176 21 1 17.1960 3.7742 3.1619 22 1 16.9626 3.1736 5.5001 23 1 16.8721 1.4550 3.7920 24 6 7.8388 1.5820 -0.0056 25 6 6.4607 1.6644 0.0002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7803 -0.8892 30 1 3.9558 0.7807 0.8908 31 1 6.1248 5.0326 -0.0009 32 1 8.5808 4.8817 -0.0013 33 1 12.3365 1.6736 1.0287 34 1 12.5756 3.3752 0.5643 35 1 12.2772 4.0616 2.9286 36 1 12.0383 2.3598 3.3924 37 1 14.4316 3.6325 5.8847 38 1 8.3217 0.6160 -0.0101 39 1 5.8656 0.7633 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291388865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:52 Heat of formation + Delta-G solvation = -156.894146 kcal Electronic energy + Delta-G solvation = -23044.868597 eV Core-core repulsion = 19236.745926 eV Total energy + Delta-G solvation = -3808.122671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.34019 -41.58252 -39.81794 -37.90531 -37.70766 -35.66431 -33.23962 -32.69408 -31.79539 -31.25447 -28.25821 -28.11362 -25.23502 -24.14712 -23.31918 -22.43880 -21.58189 -19.51614 -19.17401 -18.73702 -18.63015 -17.87356 -17.81278 -17.55867 -17.33802 -16.50511 -16.20064 -15.94930 -15.67105 -15.27388 -14.86680 -14.70147 -14.57227 -14.40810 -14.24535 -14.11082 -13.68137 -13.36231 -13.22255 -13.11996 -12.90706 -12.78710 -12.54644 -12.00801 -11.93168 -11.90577 -11.83287 -11.77561 -11.60110 -11.36995 -11.32178 -10.68794 -10.56568 -10.18914 -8.50734 -8.19467 -6.33566 -0.23122 -0.00925 0.17775 0.93740 1.09847 1.12532 1.44434 1.48414 1.55954 1.65204 1.72171 2.43076 2.57865 3.14453 3.56773 3.66160 3.69141 3.83075 3.83104 4.07474 4.15782 4.26628 4.30595 4.30962 4.33251 4.43347 4.55268 4.70116 4.78808 4.82817 4.99111 5.02631 5.18678 5.21412 5.31290 5.46458 5.53906 5.70661 5.80323 6.12772 6.47137 6.79392 6.86561 7.36931 8.92750 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031700 B = 0.001830 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.070222 B =15293.820392 C =15538.863807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.484 3.516 4 O -0.523 6.523 5 C -0.126 4.126 6 S -0.054 6.054 7 C -0.101 4.101 8 C -0.089 4.089 9 C -0.115 4.115 10 C 0.051 3.949 11 O -0.294 6.294 12 C 0.463 3.537 13 O -0.526 6.526 14 C -0.090 4.090 15 C 0.038 3.962 16 C -0.545 4.545 17 H 0.079 0.921 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.289 1.289 23 H -0.262 1.262 24 C -0.103 4.103 25 C -0.115 4.115 26 H 0.135 0.865 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.120 0.880 35 H -0.010 1.010 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.154 0.846 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.355 -8.897 -15.443 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.326 3.674 4 O -0.412 6.412 5 C -0.274 4.274 6 S 0.190 5.810 7 C -0.214 4.214 8 C -0.113 4.113 9 C -0.135 4.135 10 C 0.008 3.992 11 O -0.210 6.210 12 C 0.309 3.691 13 O -0.413 6.413 14 C -0.128 4.128 15 C 0.001 3.999 16 C -0.582 4.582 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.215 1.215 23 H -0.187 1.187 24 C -0.123 4.123 25 C -0.138 4.138 26 H 0.153 0.847 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.171 0.829 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.646 -7.522 -14.976 30.636 hybrid contribution 1.420 -0.595 0.663 1.676 sum -24.226 -8.117 -14.314 29.286 Atomic orbital electron populations 1.23640 0.73959 1.06078 1.02804 1.86474 1.25418 1.31485 1.83536 1.22727 0.90735 0.81840 0.72053 1.90738 1.67359 1.37144 1.45941 1.23507 0.91820 0.99833 1.12190 1.86334 0.95383 1.06866 1.92460 1.22065 0.98091 0.96738 1.04487 1.20738 0.91931 0.98475 1.00109 1.21388 0.95500 0.97193 0.99409 1.19010 0.81251 0.94759 1.04202 1.84705 1.18652 1.81875 1.35738 1.25074 0.92527 0.72039 0.79482 1.90665 1.68570 1.43231 1.38831 1.21578 0.83714 1.06219 1.01243 1.18816 0.95568 0.95337 0.90227 1.21606 0.92986 1.46408 0.97245 0.90253 1.26092 1.04146 0.94550 0.95352 1.70153 1.38220 1.47201 1.01963 0.85366 0.78371 0.79367 0.77107 1.18750 1.21454 1.18666 1.21359 0.94066 0.98061 0.98839 1.21375 0.93990 0.97047 1.01393 0.84670 0.91852 0.91611 0.82058 0.82707 0.83395 0.85135 0.85975 0.86221 0.99158 0.99066 0.92774 0.82852 0.81374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.41 16 2 O -0.35 -4.26 10.56 -51.34 -0.54 -4.80 16 3 C 0.48 7.32 7.98 71.24 0.57 7.89 16 4 O -0.52 -11.57 15.61 21.98 0.34 -11.23 16 5 C -0.13 -1.34 4.93 71.24 0.35 -0.99 16 6 S -0.05 -0.97 21.06 -56.49 -1.19 -2.16 16 7 C -0.10 -2.08 6.11 22.61 0.14 -1.95 16 8 C -0.09 -2.11 9.79 22.40 0.22 -1.89 16 9 C -0.11 -3.22 9.56 22.35 0.21 -3.00 16 10 C 0.05 1.52 5.13 22.51 0.12 1.64 16 11 O -0.29 -9.63 10.02 3.99 0.04 -9.59 16 12 C 0.46 18.06 7.83 71.24 0.56 18.62 16 13 O -0.53 -24.62 15.47 21.94 0.34 -24.28 16 14 C -0.09 -3.53 5.75 29.85 0.17 -3.35 16 15 C 0.04 2.01 4.26 29.85 0.13 2.14 16 16 C -0.54 -29.89 9.11 25.60 0.23 -29.65 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 19 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 20 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 C -0.10 -2.40 9.98 22.35 0.22 -2.18 16 25 C -0.11 -2.08 9.36 22.40 0.21 -1.87 16 26 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.06 0.54 8.13 -2.38 -0.02 0.52 16 28 H 0.07 0.52 8.13 -2.39 -0.02 0.50 16 29 H 0.16 0.81 7.74 -2.39 -0.02 0.79 16 30 H 0.16 1.02 7.75 -2.39 -0.02 1.01 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 34 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 35 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 36 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.17 1.63 5.87 -2.91 -0.02 1.61 16 Total: -1.00 -77.53 361.16 7.16 -70.37 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.07 Total: 6.91 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 4.79 Total: -12.93 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: 0.18 Total: -49.89 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -1.19 Total: -2.16 kcal Total: -77.53 7.16 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291388865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.523 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds