Wall clock time and date at job start Tue Mar 31 2020 14:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47101 * 299.99859 * 3 2 1 6 6 H 1.48498 * 109.47190 * 60.00100 * 3 2 1 7 7 C 1.37878 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99572 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46930 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47002 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99828 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.40099 * 119.99973 * 179.97438 * 13 11 10 15 15 C 1.34773 * 119.99973 * 179.97438 * 14 13 11 16 16 O 1.21284 * 119.99974 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00242 * 179.97438 * 15 14 13 18 18 S 1.81398 * 109.47648 * 180.02562 * 17 15 14 19 19 C 1.76190 * 103.00187 * 180.02562 * 18 17 15 20 20 C 1.38791 * 120.09829 * 359.96083 * 19 18 17 21 21 C 1.38201 * 119.97966 * 180.02562 * 20 19 18 22 22 C 1.38275 * 120.16113 * 359.97438 * 21 20 19 23 23 C 1.38300 * 120.19086 * 0.02562 * 22 21 20 24 24 C 1.38484 * 120.02614 * 359.97438 * 23 22 21 25 25 O 1.36010 * 120.08193 * 180.02562 * 24 23 22 26 26 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47129 * 60.00093 * 9 7 2 28 28 H 1.09004 * 109.47081 * 299.99974 * 9 7 2 29 29 H 1.08998 * 109.47385 * 59.99949 * 10 9 7 30 30 H 1.09000 * 109.47401 * 299.99131 * 10 9 7 31 31 H 0.97002 * 120.00085 * 0.02562 * 13 11 10 32 32 H 0.97002 * 119.99941 * 0.02562 * 14 13 11 33 33 H 1.09012 * 109.46835 * 60.00239 * 17 15 14 34 34 H 1.08996 * 109.47413 * 300.00584 * 17 15 14 35 35 H 1.08006 * 120.00840 * 0.04000 * 20 19 18 36 36 H 1.07997 * 119.92254 * 180.27239 * 21 20 19 37 37 H 1.08001 * 119.90061 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.98481 * 179.97438 * 23 22 21 39 39 H 0.96701 * 113.99478 * 89.99609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1656 -6.1344 -0.0018 14 7 1.4651 -7.3477 -0.0018 15 6 2.1390 -8.5148 -0.0030 16 8 3.3518 -8.5148 -0.0035 17 6 1.3855 -9.8200 -0.0025 18 16 2.5642 -11.1988 -0.0035 19 6 1.5169 -12.6156 -0.0035 20 6 0.1375 -12.4615 -0.0020 21 6 -0.6817 -13.5746 -0.0015 22 6 -0.1306 -14.8428 -0.0030 23 6 1.2429 -15.0043 -0.0045 24 6 2.0711 -13.8944 -0.0051 25 8 3.4221 -14.0519 -0.0071 26 1 -0.4849 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 3.1356 -6.1344 -0.0015 32 1 0.4951 -7.3476 -0.0018 33 1 0.7578 -9.8775 -0.8918 34 1 0.7599 -9.8780 0.8881 35 1 -0.2954 -11.4721 -0.0014 36 1 -1.7548 -13.4536 -0.0047 37 1 -0.7748 -15.7097 -0.0030 38 1 1.6697 -15.9963 -0.0053 39 1 3.8114 -14.0970 -0.8912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291984115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:28 Heat of formation + Delta-G solvation = -58.708136 kcal Electronic energy + Delta-G solvation = -22862.386733 eV Core-core repulsion = 19090.814478 eV Total energy + Delta-G solvation = -3771.572255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36547 -40.01017 -38.86146 -37.08608 -35.36118 -33.58599 -32.45749 -31.69520 -30.96927 -30.15849 -29.26915 -25.70393 -23.41470 -23.13281 -22.14732 -21.64745 -20.09470 -19.02287 -17.99974 -17.88869 -17.39209 -16.54393 -16.42046 -16.19217 -15.98614 -15.50158 -15.25856 -15.06347 -14.60814 -14.47886 -14.20480 -13.80264 -13.59060 -13.50873 -12.96890 -12.61620 -12.57765 -12.27826 -12.27480 -11.28543 -11.26136 -11.12572 -10.98788 -10.66133 -10.54894 -10.51767 -10.25719 -10.08754 -9.85337 -9.48197 -9.27902 -9.16398 -8.42790 -8.35239 -7.75278 -6.03160 -4.07879 0.64442 0.72762 0.78516 1.88494 1.95117 2.07069 2.96762 3.07251 3.29491 3.37030 3.40299 3.72144 3.76047 4.32057 4.38773 4.39651 4.47773 4.51710 4.63255 4.80611 4.89110 5.13929 5.29397 5.32520 5.35137 5.65476 5.79220 5.95542 6.05509 6.06252 6.24555 6.53652 6.60641 6.77425 7.18348 7.54506 7.65926 7.73364 7.74766 7.97308 8.28588 8.51922 8.99931 9.56413 11.07769 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.041249 B = 0.001728 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.645271 B =16199.805164 C =16850.131718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.119 4.119 11 C 0.514 3.486 12 O -0.533 6.533 13 N -0.535 5.535 14 N -0.516 5.516 15 C 0.530 3.470 16 O -0.524 6.524 17 C -0.154 4.154 18 S 0.004 5.996 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.126 4.126 24 C 0.123 3.877 25 O -0.489 6.489 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.430 0.570 32 H 0.432 0.568 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -31.404 -1.678 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.406 6.406 13 N -0.287 5.287 14 N -0.262 5.262 15 C 0.313 3.687 16 O -0.400 6.400 17 C -0.306 4.306 18 S 0.248 5.752 19 C -0.246 4.246 20 C -0.148 4.148 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.146 4.146 24 C 0.072 3.928 25 O -0.299 6.299 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.272 0.728 32 H 0.274 0.726 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.027 -31.025 -1.071 31.110 hybrid contribution -1.107 0.743 -0.484 1.419 sum 0.919 -30.282 -1.555 30.335 Atomic orbital electron populations 1.70002 1.06084 1.26621 1.50071 1.25023 0.94847 0.99330 0.95149 0.86503 0.80029 0.83631 0.77612 1.19673 1.20991 1.20984 1.21223 0.93088 0.90765 1.51617 0.92324 1.18950 0.93101 0.89110 0.98881 1.21922 1.00942 0.89696 1.03453 1.22163 0.89152 0.83940 0.74480 1.90693 1.14168 1.86848 1.48870 1.45628 1.08979 0.95432 1.78678 1.44626 1.09254 0.97387 1.74935 1.19561 0.88079 0.83176 0.77837 1.90789 1.12924 1.86527 1.49713 1.23730 1.03292 0.95104 1.08516 1.86443 1.06117 0.91269 1.91396 1.22597 0.97598 0.97881 1.06506 1.21120 0.91347 0.99826 1.02467 1.21125 1.00033 0.92183 0.99336 1.21099 0.94452 0.97589 1.00118 1.21370 0.93685 0.98349 1.01195 1.17851 0.83488 0.90024 1.01417 1.84883 1.16453 1.95011 1.33587 0.92927 0.95585 0.95594 0.89356 0.89372 0.72771 0.72626 0.85948 0.85872 0.85434 0.85288 0.85285 0.84852 0.75174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 10 C -0.12 -2.24 5.64 -27.88 -0.16 -2.40 16 11 C 0.51 9.15 7.95 -10.98 -0.09 9.06 16 12 O -0.53 -11.32 15.82 5.56 0.09 -11.23 16 13 N -0.54 -7.60 6.26 31.22 0.20 -7.40 16 14 N -0.52 -6.23 6.26 31.22 0.20 -6.03 16 15 C 0.53 6.08 7.97 -10.99 -0.09 5.99 16 16 O -0.52 -7.76 15.70 5.55 0.09 -7.67 16 17 C -0.15 -1.21 4.82 36.01 0.17 -1.04 16 18 S 0.00 0.04 20.54 -107.50 -2.21 -2.17 16 19 C -0.13 -1.16 6.12 -38.95 -0.24 -1.40 16 20 C -0.12 -0.88 9.36 -39.39 -0.37 -1.25 16 21 C -0.11 -0.65 10.04 -39.58 -0.40 -1.05 16 22 C -0.11 -0.65 10.04 -39.54 -0.40 -1.05 16 23 C -0.13 -0.85 9.98 -39.47 -0.39 -1.25 16 24 C 0.12 1.04 6.70 -39.07 -0.26 0.78 16 25 O -0.49 -4.00 12.88 -19.77 -0.25 -4.25 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.43 5.51 8.00 -182.60 -1.46 4.04 16 32 H 0.43 4.64 8.00 -182.60 -1.46 3.18 16 33 H 0.12 0.67 7.75 -51.92 -0.40 0.27 16 34 H 0.12 0.71 7.75 -51.93 -0.40 0.31 16 35 H 0.13 0.67 5.88 -52.48 -0.31 0.37 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.39 1.54 9.06 45.56 0.41 1.95 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -36.57 358.20 -9.65 -46.22 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.12 Total: 2.94 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.75 Total: -6.03 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 1.13 Total: -39.42 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.08 Total: -23.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.21 Total: -2.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.57 -9.65 -46.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291984115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.493 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds