Wall clock time and date at job start Tue Mar 31 2020 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47101 * 299.99859 * 3 2 1 6 6 H 1.48498 * 109.47190 * 60.00100 * 3 2 1 7 7 C 1.37878 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99572 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46930 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47002 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99828 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.40099 * 119.99973 * 179.97438 * 13 11 10 15 15 C 1.34773 * 119.99973 * 179.97438 * 14 13 11 16 16 O 1.21284 * 119.99974 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00242 * 179.97438 * 15 14 13 18 18 S 1.81398 * 109.47648 * 180.02562 * 17 15 14 19 19 C 1.76190 * 103.00187 * 180.02562 * 18 17 15 20 20 C 1.38791 * 120.09829 * 359.96083 * 19 18 17 21 21 C 1.38201 * 119.97966 * 180.02562 * 20 19 18 22 22 C 1.38275 * 120.16113 * 359.97438 * 21 20 19 23 23 C 1.38300 * 120.19086 * 0.02562 * 22 21 20 24 24 C 1.38484 * 120.02614 * 359.97438 * 23 22 21 25 25 O 1.36010 * 120.08193 * 180.02562 * 24 23 22 26 26 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47129 * 60.00093 * 9 7 2 28 28 H 1.09004 * 109.47081 * 299.99974 * 9 7 2 29 29 H 1.08998 * 109.47385 * 59.99949 * 10 9 7 30 30 H 1.09000 * 109.47401 * 299.99131 * 10 9 7 31 31 H 0.97002 * 120.00085 * 0.02562 * 13 11 10 32 32 H 0.97002 * 119.99941 * 0.02562 * 14 13 11 33 33 H 1.09012 * 109.46835 * 60.00239 * 17 15 14 34 34 H 1.08996 * 109.47413 * 300.00584 * 17 15 14 35 35 H 1.08006 * 120.00840 * 0.04000 * 20 19 18 36 36 H 1.07997 * 119.92254 * 180.27239 * 21 20 19 37 37 H 1.08001 * 119.90061 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.98481 * 179.97438 * 23 22 21 39 39 H 0.96701 * 113.99478 * 89.99609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1656 -6.1344 -0.0018 14 7 1.4651 -7.3477 -0.0018 15 6 2.1390 -8.5148 -0.0030 16 8 3.3518 -8.5148 -0.0035 17 6 1.3855 -9.8200 -0.0025 18 16 2.5642 -11.1988 -0.0035 19 6 1.5169 -12.6156 -0.0035 20 6 0.1375 -12.4615 -0.0020 21 6 -0.6817 -13.5746 -0.0015 22 6 -0.1306 -14.8428 -0.0030 23 6 1.2429 -15.0043 -0.0045 24 6 2.0711 -13.8944 -0.0051 25 8 3.4221 -14.0519 -0.0071 26 1 -0.4849 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 3.1356 -6.1344 -0.0015 32 1 0.4951 -7.3476 -0.0018 33 1 0.7578 -9.8775 -0.8918 34 1 0.7599 -9.8780 0.8881 35 1 -0.2954 -11.4721 -0.0014 36 1 -1.7548 -13.4536 -0.0047 37 1 -0.7748 -15.7097 -0.0030 38 1 1.6697 -15.9963 -0.0053 39 1 3.8114 -14.0970 -0.8912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291984115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:27 Heat of formation + Delta-G solvation = -86.484322 kcal Electronic energy + Delta-G solvation = -22863.591198 eV Core-core repulsion = 19090.814478 eV Total energy + Delta-G solvation = -3772.776721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51759 -40.52194 -40.15696 -37.61266 -36.58192 -35.57076 -33.63035 -32.81946 -32.10390 -30.67165 -30.25827 -27.57520 -24.07967 -23.89969 -23.54070 -22.67644 -21.48518 -19.70447 -19.14597 -18.94616 -18.40438 -18.00737 -17.16164 -17.04099 -16.90892 -16.51800 -16.46145 -16.40353 -15.82935 -15.48269 -15.04930 -14.81983 -14.56685 -14.35876 -14.21953 -14.10753 -13.45487 -13.26272 -13.08958 -12.86847 -12.73575 -12.49833 -12.46776 -11.94903 -11.72612 -11.67112 -11.53093 -11.30452 -11.14259 -11.01264 -10.79369 -10.56465 -9.77406 -9.55380 -8.42547 -8.18074 -6.30957 0.01289 0.15041 0.27303 0.89902 1.08956 1.29725 1.44494 1.44516 1.58007 1.61091 2.42862 2.60408 2.80404 3.15997 3.24404 3.41513 3.85235 3.86494 3.94034 4.08534 4.12967 4.36894 4.45340 4.46334 4.51845 4.67169 4.90851 5.00963 5.18860 5.33649 5.44075 5.49501 5.51734 5.59636 5.62816 5.82776 5.85506 6.17205 6.37371 6.70087 6.75172 6.87912 7.23015 7.39219 8.94518 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.041249 B = 0.001728 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.645271 B =16199.805164 C =16850.131718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.110 4.110 11 C 0.521 3.479 12 O -0.574 6.574 13 N -0.522 5.522 14 N -0.513 5.513 15 C 0.534 3.466 16 O -0.557 6.557 17 C -0.139 4.139 18 S -0.051 6.051 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.135 4.135 24 C 0.105 3.895 25 O -0.505 6.505 26 H 0.263 0.737 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.439 0.561 32 H 0.439 0.561 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -32.516 -1.756 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.151 4.151 11 C 0.310 3.690 12 O -0.451 6.451 13 N -0.272 5.272 14 N -0.261 5.261 15 C 0.320 3.680 16 O -0.434 6.434 17 C -0.291 4.291 18 S 0.192 5.808 19 C -0.258 4.258 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.154 4.154 24 C 0.055 3.945 25 O -0.318 6.318 26 H 0.071 0.929 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.283 0.717 32 H 0.283 0.717 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.460 -32.189 -1.157 32.304 hybrid contribution -1.251 0.925 -0.468 1.625 sum 1.208 -31.265 -1.625 31.330 Atomic orbital electron populations 1.70162 1.08146 1.27717 1.51532 1.26068 0.95703 1.03737 0.94720 0.85311 0.79319 0.78373 0.77469 1.17785 1.20742 1.20757 1.21735 0.94105 0.91545 1.50638 0.90544 1.18725 0.93656 0.91869 0.95362 1.21649 0.99523 0.88135 1.05788 1.21701 0.88303 0.84677 0.74353 1.90682 1.15763 1.87459 1.51154 1.45183 1.09336 0.95819 1.76860 1.44780 1.09614 0.96471 1.75215 1.20155 0.87813 0.83730 0.76300 1.90782 1.14606 1.87017 1.51002 1.23701 1.02476 0.91718 1.11160 1.86589 1.08556 0.93427 1.92231 1.22582 0.98012 0.96955 1.08221 1.21425 0.90765 1.01217 1.01919 1.21481 1.01242 0.91899 0.98509 1.21477 0.94341 0.98613 0.98532 1.21610 0.94190 0.98526 1.01115 1.18148 0.83698 0.90615 1.02085 1.84831 1.16832 1.95066 1.35078 0.92868 0.99233 0.99276 0.86996 0.86966 0.71683 0.71745 0.83052 0.83311 0.83716 0.82903 0.82748 0.83484 0.73590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 4 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.04 2.19 4.26 29.85 0.13 2.32 16 10 C -0.11 -4.08 5.64 29.85 0.17 -3.91 16 11 C 0.52 18.34 7.95 87.66 0.70 19.04 16 12 O -0.57 -24.80 15.82 -3.01 -0.05 -24.85 16 13 N -0.52 -14.16 6.26 -173.53 -1.09 -15.25 16 14 N -0.51 -11.65 6.26 -173.53 -1.09 -12.73 16 15 C 0.53 11.49 7.97 87.66 0.70 12.19 16 16 O -0.56 -16.04 15.70 -3.04 -0.05 -16.08 16 17 C -0.14 -1.91 4.82 71.24 0.34 -1.57 16 18 S -0.05 -0.99 20.54 -56.49 -1.16 -2.15 16 19 C -0.14 -2.39 6.12 22.68 0.14 -2.25 16 20 C -0.13 -1.57 9.36 22.39 0.21 -1.36 16 21 C -0.11 -1.06 10.04 22.27 0.22 -0.83 16 22 C -0.11 -1.00 10.04 22.29 0.22 -0.78 16 23 C -0.13 -1.63 9.98 22.34 0.22 -1.41 16 24 C 0.11 1.72 6.70 22.60 0.15 1.87 16 25 O -0.51 -8.34 12.88 -93.67 -1.21 -9.54 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 28 H -0.01 -0.66 8.10 -2.38 -0.02 -0.68 16 29 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 30 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 31 H 0.44 10.53 8.00 -213.32 -1.71 8.83 16 32 H 0.44 8.79 8.00 -213.32 -1.71 7.08 16 33 H 0.15 1.23 7.75 -2.38 -0.02 1.21 16 34 H 0.15 1.32 7.75 -2.39 -0.02 1.30 16 35 H 0.15 1.11 5.88 -2.91 -0.02 1.09 16 36 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.41 3.37 9.06 -74.06 -0.67 2.69 16 Total: -1.00 -81.72 358.20 -1.38 -83.10 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -2.96 Total: 15.44 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 3.90 Total: -6.03 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.89 Total: -85.36 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -1.30 Total: -50.47 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -1.16 Total: -2.15 kcal Total: -81.72 -1.38 -83.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291984115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.383 kcal (2) G-P(sol) polarization free energy of solvation -81.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds