Wall clock time and date at job start Tue Mar 31 2020 14:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00192 * 2 1 4 4 H 1.48503 * 109.46801 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47365 * 300.00090 * 3 2 1 6 6 H 1.48496 * 109.46743 * 60.00257 * 3 2 1 7 7 C 1.37880 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99775 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47159 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47383 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99870 * 0.02562 * 11 10 9 13 13 O 1.34239 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.35988 * 117.00231 * 185.77884 * 13 11 10 15 15 C 1.38727 * 119.99065 * 249.00125 * 14 13 11 16 16 C 1.38127 * 120.01507 * 179.97438 * 15 14 13 17 17 C 1.38688 * 120.01289 * 359.97438 * 16 15 14 18 18 O 1.35979 * 120.00501 * 179.97438 * 17 16 15 19 19 C 1.42902 * 116.99912 * 359.97438 * 18 17 16 20 20 C 1.53009 * 109.47145 * 180.02562 * 19 18 17 21 21 C 1.52996 * 117.49764 * 185.00239 * 20 19 18 22 22 C 1.52996 * 117.50209 * 116.37725 * 20 19 18 23 23 C 1.38798 * 119.99029 * 0.24746 * 17 16 15 24 24 Cl 1.73604 * 120.00951 * 179.75169 * 23 17 16 25 25 C 1.38217 * 119.98114 * 359.52146 * 23 17 16 26 26 H 0.97005 * 119.99597 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47424 * 60.00905 * 9 7 2 28 28 H 1.08998 * 109.47413 * 300.00761 * 9 7 2 29 29 H 1.09007 * 109.46763 * 60.00389 * 10 9 7 30 30 H 1.08998 * 109.47400 * 300.00549 * 10 9 7 31 31 H 1.07992 * 119.99755 * 359.97390 * 15 14 13 32 32 H 1.08001 * 119.99098 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.47568 * 60.00365 * 19 18 17 34 34 H 1.09004 * 109.47132 * 299.99996 * 19 18 17 35 35 H 1.09000 * 115.55544 * 330.68055 * 20 19 18 36 36 H 1.08993 * 117.50283 * 145.02075 * 21 20 19 37 37 H 1.08997 * 117.50095 * 359.97438 * 21 20 19 38 38 H 1.09007 * 117.49612 * 359.97438 * 22 20 19 39 39 H 1.09000 * 117.51867 * 214.97271 * 22 20 19 40 40 H 1.08004 * 120.00943 * 180.25014 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 0.0001 12 8 0.2832 -4.9672 0.0000 13 8 2.1627 -6.1298 0.0007 14 6 1.4273 -7.2673 -0.1207 15 6 1.3148 -8.1382 0.9532 16 6 0.5676 -9.2934 0.8306 17 6 -0.0709 -9.5829 -0.3661 18 8 -0.8060 -10.7205 -0.4868 19 6 -0.8769 -11.5717 0.6588 20 6 -1.7404 -12.7925 0.3345 21 6 -2.0366 -13.7708 1.4730 22 6 -1.0630 -14.1640 0.3602 23 6 0.0453 -8.7141 -1.4423 24 17 -0.7484 -9.0792 -2.9425 25 6 0.7891 -7.5558 -1.3177 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5568 -0.8904 28 1 0.6245 -2.5570 0.8896 29 1 2.8717 -3.6044 0.8896 30 1 2.8718 -3.6044 -0.8904 31 1 1.8114 -7.9130 1.8854 32 1 0.4805 -9.9714 1.6668 33 1 -1.3189 -11.0245 1.4914 34 1 0.1266 -11.8990 0.9310 35 1 -2.5230 -12.6313 -0.4069 36 1 -3.0138 -14.2534 1.4804 37 1 -1.6160 -13.5450 2.4528 38 1 -0.0019 -14.1967 0.6077 39 1 -1.3996 -14.9056 -0.3643 40 1 0.8765 -6.8775 -2.1536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294389116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:12 Heat of formation + Delta-G solvation = -79.862890 kcal Electronic energy + Delta-G solvation = -23617.105585 eV Core-core repulsion = 19810.279534 eV Total energy + Delta-G solvation = -3806.826051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17987 -40.15164 -38.22119 -37.18039 -36.66767 -35.88926 -33.64795 -31.28347 -31.21299 -29.80070 -27.82635 -26.12721 -23.55695 -23.32101 -22.88043 -21.74551 -21.01674 -20.03549 -18.69700 -17.96736 -17.15690 -16.97587 -16.38837 -15.93819 -15.78792 -15.21962 -15.13744 -14.66012 -14.50190 -14.26562 -13.89876 -13.62383 -13.35817 -12.90710 -12.72533 -12.29270 -12.12740 -12.06895 -11.88254 -11.59972 -11.45320 -11.22367 -11.05607 -11.00996 -10.93028 -10.74299 -10.65704 -10.43625 -10.12593 -10.07780 -9.68035 -9.21784 -9.14549 -8.41771 -8.26811 -6.05075 -4.10357 0.85847 0.90744 1.97799 2.59939 2.63370 2.92438 3.28962 3.31215 3.36402 3.39699 3.53106 4.18039 4.34935 4.41245 4.41484 4.51246 4.57368 4.71888 4.81277 4.93057 5.05097 5.11167 5.14644 5.23711 5.30593 5.38930 5.42894 5.60274 5.67954 5.70179 5.82727 5.98169 6.03522 6.10301 6.24850 6.65843 6.82114 6.97999 7.61847 7.66697 7.93233 8.17794 8.33036 8.96744 9.54116 11.05867 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.002143 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.509371 B =13060.540399 C =13431.491474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.451 3.549 12 O -0.483 6.483 13 O -0.299 6.299 14 C 0.072 3.928 15 C -0.076 4.076 16 C -0.185 4.185 17 C 0.135 3.865 18 O -0.299 6.299 19 C 0.088 3.912 20 C -0.157 4.157 21 C -0.169 4.169 22 C -0.176 4.176 23 C -0.052 4.052 24 Cl -0.051 7.051 25 C -0.079 4.079 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -27.779 1.606 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.295 3.705 12 O -0.366 6.366 13 O -0.216 6.216 14 C 0.030 3.970 15 C -0.094 4.094 16 C -0.203 4.203 17 C 0.089 3.911 18 O -0.212 6.212 19 C 0.013 3.987 20 C -0.175 4.175 21 C -0.206 4.206 22 C -0.213 4.213 23 C -0.079 4.079 24 Cl -0.022 7.022 25 C -0.098 4.098 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.360 -27.775 1.324 27.809 hybrid contribution 0.305 0.860 0.060 0.915 sum -0.055 -26.915 1.384 26.951 Atomic orbital electron populations 1.70004 1.06106 1.26731 1.49820 1.25029 0.94869 0.99399 0.95061 0.86473 0.80012 0.83484 0.77641 1.19619 1.20942 1.20962 1.21164 0.93131 0.90503 1.51924 0.92157 1.19056 0.93210 0.89205 0.99041 1.21840 1.00766 0.86747 1.04392 1.25362 0.88297 0.85042 0.71769 1.90688 1.15636 1.86758 1.43536 1.84792 1.39773 1.13213 1.83834 1.18281 0.97624 0.88031 0.93043 1.21011 0.96973 0.93600 0.97831 1.21004 1.02259 1.00067 0.97018 1.18565 0.92770 0.86896 0.92873 1.86144 1.66364 1.30152 1.38527 1.22381 0.99442 0.89594 0.87250 1.22087 1.02608 0.89474 1.03310 1.23000 1.01298 1.02217 0.94117 1.23111 0.98695 0.97620 1.01835 1.19817 1.03379 0.96497 0.88225 1.98369 1.78831 1.94457 1.30505 1.21092 0.95037 0.95333 0.98382 0.92845 0.95470 0.95489 0.88575 0.88518 0.84045 0.83944 0.91189 0.91565 0.86379 0.88086 0.88433 0.88481 0.88350 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -1.97 5.75 -27.88 -0.16 -2.13 16 11 C 0.45 8.70 7.73 36.01 0.28 8.97 16 12 O -0.48 -10.89 15.39 -18.75 -0.29 -11.18 16 13 O -0.30 -4.93 10.04 -23.75 -0.24 -5.17 16 14 C 0.07 1.10 5.27 -39.23 -0.21 0.89 16 15 C -0.08 -0.93 9.98 -39.44 -0.39 -1.33 16 16 C -0.18 -1.98 9.03 -39.46 -0.36 -2.34 16 17 C 0.14 1.67 6.68 -39.21 -0.26 1.41 16 18 O -0.30 -3.34 9.59 -19.68 -0.19 -3.53 16 19 C 0.09 0.68 5.02 37.16 0.19 0.87 16 20 C -0.16 -1.07 6.06 -90.62 -0.55 -1.62 16 21 C -0.17 -0.86 10.25 -26.73 -0.27 -1.14 16 22 C -0.18 -0.98 10.18 -26.73 -0.27 -1.25 16 23 C -0.05 -0.72 6.33 -39.38 -0.25 -0.97 16 24 Cl -0.05 -0.66 28.50 -51.86 -1.48 -2.14 16 25 C -0.08 -1.18 9.10 -39.42 -0.36 -1.54 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 28 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 30 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 1.07 6.29 -52.49 -0.33 0.73 16 33 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.07 0.42 7.39 -51.93 -0.38 0.04 16 35 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.49 8.03 -51.92 -0.42 0.07 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.31 364.47 -9.43 -41.74 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.29 Total: -2.68 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.15 Total: -12.73 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.72 Total: -19.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.31 -9.43 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294389116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.126 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds