Wall clock time and date at job start Tue Mar 31 2020 13:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75356 * 124.30895 * 2 1 4 4 C 1.75749 * 92.18131 * 180.02562 * 3 2 1 5 5 N 1.33955 * 131.26691 * 180.02562 * 4 3 2 6 6 C 1.31278 * 121.05630 * 179.97438 * 5 4 3 7 7 C 1.50698 * 118.90430 * 180.02562 * 6 5 4 8 8 N 1.32089 * 122.18837 * 0.02562 * 6 5 4 9 9 C 1.32531 * 121.17509 * 359.97438 * 8 6 5 10 10 S 1.76208 * 120.53293 * 179.97438 * 9 8 6 11 11 C 1.80998 * 99.99889 * 359.97438 * 10 9 8 12 12 C 1.52996 * 109.47161 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47066 * 60.00373 * 12 11 10 14 14 O 1.42903 * 109.47446 * 300.00249 * 12 11 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.39693 * 109.62104 * 0.23853 * 4 3 2 24 24 C 1.31903 * 124.31333 * 180.02562 * 2 1 3 25 25 C 1.50700 * 122.59735 * 359.97438 * 24 2 1 26 26 H 1.08992 * 109.47510 * 359.97374 * 1 2 3 27 27 H 1.09006 * 109.46757 * 119.97715 * 1 2 3 28 28 H 1.09000 * 109.47289 * 239.96963 * 1 2 3 29 29 H 1.09001 * 109.47658 * 269.98259 * 7 6 5 30 30 H 1.09002 * 109.47174 * 29.98438 * 7 6 5 31 31 H 1.09002 * 109.47033 * 149.98191 * 7 6 5 32 32 H 1.09004 * 109.46826 * 60.00137 * 11 10 9 33 33 H 1.09000 * 109.47766 * 300.00468 * 11 10 9 34 34 H 0.96697 * 113.99557 * 300.00558 * 14 12 11 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08995 * 109.47278 * 89.97323 * 25 24 2 37 37 H 1.08995 * 109.47298 * 209.97713 * 25 24 2 38 38 H 1.09002 * 109.46714 * 329.97719 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9837 0.5138 -0.0008 5 7 5.2674 0.8966 -0.0007 6 6 6.2378 0.0125 -0.0009 7 6 7.6647 0.4971 -0.0002 8 7 6.0050 -1.2877 -0.0017 9 6 4.7679 -1.7632 -0.0018 10 16 4.4769 -3.5011 -0.0035 11 6 6.1830 -4.1055 -0.0054 12 6 6.1820 -5.6355 -0.0064 13 1 5.6672 -5.9979 -0.8963 14 8 5.5091 -6.1123 1.1606 15 6 7.6026 -6.1387 -0.0074 16 1 8.4239 -5.4374 -0.0069 17 6 7.8537 -7.4945 -0.0027 18 7 6.8535 -8.3484 -0.0029 19 14 9.6144 -8.1181 0.0039 20 1 10.3115 -7.6200 1.2168 21 1 9.6135 -9.6032 0.0077 22 1 10.3181 -7.6272 -1.2082 23 6 3.6812 -0.8500 -0.0065 24 6 2.2505 -1.0895 -0.0005 25 6 1.6595 -2.4758 -0.0005 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5135 -0.8903 28 1 -0.3634 -0.5143 0.8897 29 1 8.0093 0.6142 -1.0277 30 1 7.7224 1.4565 0.5139 31 1 8.2947 -0.2290 0.5137 32 1 6.6977 -3.7434 0.8847 33 1 6.6965 -3.7415 -0.8953 34 1 5.9135 -5.8277 1.9915 35 1 7.0302 -9.3022 0.0000 36 1 1.5162 -2.8096 -1.0282 37 1 2.3361 -3.1592 0.5125 38 1 0.6987 -2.4611 0.5140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294874368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:35 Heat of formation + Delta-G solvation = -23.003495 kcal Electronic energy + Delta-G solvation = -22172.015355 eV Core-core repulsion = 18844.744240 eV Total energy + Delta-G solvation = -3327.271115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10180 -38.48460 -37.90673 -34.87745 -34.29789 -33.78926 -31.66417 -30.79677 -29.65418 -27.44180 -27.31486 -25.28419 -24.17806 -22.74751 -20.52548 -19.44138 -19.23303 -18.99439 -17.55578 -16.82498 -16.79525 -16.70228 -16.20012 -15.96794 -15.53609 -15.18563 -14.92686 -14.57082 -14.21206 -13.90270 -13.84643 -13.61658 -13.52037 -13.47990 -13.28973 -13.21752 -13.01765 -12.85099 -12.77755 -12.65980 -12.25611 -12.08977 -11.92477 -11.86044 -11.43532 -11.06121 -10.71638 -10.40883 -10.31267 -10.09064 -9.34904 -8.65240 -8.17341 -6.43989 -0.78703 -0.40523 -0.03214 0.27977 0.76576 0.98224 1.16391 1.42426 1.43066 1.51597 2.36649 2.38905 2.92012 3.09010 3.13341 3.33751 3.58185 3.86306 4.08748 4.19720 4.23552 4.28380 4.33880 4.62258 4.64242 4.67228 4.69088 4.72038 4.80995 4.84996 4.94903 5.10463 5.17000 5.20507 5.45216 5.50036 5.59505 5.64371 5.97085 6.64354 6.80325 7.27049 7.43975 8.86868 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.003424 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.728301 B = 8174.940812 C = 9535.433745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.163 4.163 3 S 0.192 5.808 4 C 0.073 3.927 5 N -0.516 5.516 6 C 0.330 3.670 7 C -0.078 4.078 8 N -0.546 5.546 9 C 0.191 3.809 10 S 0.016 5.984 11 C -0.121 4.121 12 C 0.247 3.753 13 H 0.034 0.966 14 O -0.570 6.570 15 C -0.585 4.585 16 H 0.061 0.939 17 C 0.031 3.969 18 N -0.895 5.895 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.183 4.183 24 C -0.088 4.088 25 C -0.102 4.102 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.359 0.641 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 19.219 0.407 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.280 4.280 3 S 0.452 5.548 4 C -0.179 4.179 5 N -0.237 5.237 6 C 0.056 3.944 7 C -0.136 4.136 8 N -0.268 5.268 9 C -0.073 4.073 10 S 0.259 5.741 11 C -0.269 4.269 12 C 0.188 3.812 13 H 0.051 0.949 14 O -0.375 6.375 15 C -0.624 4.624 16 H 0.080 0.920 17 C -0.173 4.173 18 N -0.532 5.532 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.203 4.203 24 C -0.099 4.099 25 C -0.161 4.161 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.204 0.796 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.997 19.952 -0.052 23.281 hybrid contribution 2.400 -1.340 0.258 2.761 sum -9.596 18.612 0.206 20.942 Atomic orbital electron populations 1.20576 0.83763 1.04669 1.04900 1.24308 1.02128 0.94099 1.07472 1.83858 0.88454 1.05732 1.76744 1.24287 0.98368 0.95033 1.00214 1.67975 0.97917 1.38837 1.18945 1.23913 0.97685 0.83927 0.88862 1.20695 0.84870 1.02912 1.05158 1.68647 1.20620 1.17560 1.19941 1.24157 0.90377 1.00848 0.91964 1.86075 1.11813 0.89346 1.86903 1.24520 0.95255 1.01682 1.05450 1.18962 0.92123 0.84476 0.85675 0.94858 1.86522 1.56694 1.78313 1.15922 1.21855 0.92884 0.92547 1.55143 0.92047 1.25866 1.01251 0.97049 0.93101 1.70191 1.32861 1.02427 1.47684 0.85579 0.79629 0.77040 0.79150 1.19182 1.20836 1.19368 1.20391 0.95506 0.93826 1.10527 1.19439 0.88414 0.98494 1.03581 1.20787 1.01691 0.89809 1.03841 0.89536 0.88553 0.88423 0.88073 0.87904 0.89007 0.89947 0.89933 0.79620 0.92712 0.89705 0.91831 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.34 71.23 0.67 -0.18 16 2 C -0.16 -3.18 6.38 24.84 0.16 -3.02 16 3 S 0.19 4.14 23.19 -56.49 -1.31 2.83 16 4 C 0.07 2.23 7.69 84.72 0.65 2.89 16 5 N -0.52 -16.55 10.36 -183.89 -1.90 -18.45 16 6 C 0.33 10.49 7.64 138.81 1.06 11.55 16 7 C -0.08 -1.75 10.31 71.24 0.73 -1.02 16 8 N -0.55 -19.68 9.16 -182.68 -1.67 -21.35 16 9 C 0.19 6.82 7.07 85.51 0.60 7.43 16 10 S 0.02 0.58 18.14 -56.49 -1.02 -0.45 16 11 C -0.12 -5.08 4.51 71.98 0.32 -4.76 16 12 C 0.25 12.45 2.88 29.85 0.09 12.53 16 13 H 0.03 1.88 8.14 -2.38 -0.02 1.86 16 14 O -0.57 -28.77 12.31 -148.98 -1.83 -30.61 16 15 C -0.58 -31.64 8.76 25.60 0.22 -31.42 16 16 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 17 C 0.03 1.69 5.40 84.66 0.46 2.14 16 18 N -0.90 -52.34 12.83 21.45 0.28 -52.06 16 19 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.18 -5.83 6.03 -20.26 -0.12 -5.95 16 24 C -0.09 -2.20 5.96 -18.96 -0.11 -2.31 16 25 C -0.10 -2.22 9.05 71.24 0.64 -1.58 16 26 H 0.09 0.64 8.13 -2.39 -0.02 0.62 16 27 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.10 0.79 7.85 -2.39 -0.02 0.77 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.08 3.53 8.14 -2.39 -0.02 3.52 16 34 H 0.36 16.12 9.04 -74.06 -0.67 15.45 16 35 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.70 5.14 -10.71 -0.06 1.64 16 38 H 0.10 1.59 7.21 -2.39 -0.02 1.57 16 Total: -1.00 -68.41 346.40 0.32 -68.09 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.39 Total: 21.07 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 5.38 Total: -13.70 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.30 Total: -91.87 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.83 Total: -30.61 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -2.33 Total: 2.39 kcal Total: -68.41 0.32 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294874368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.082 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds