Wall clock time and date at job start Tue Mar 31 2020 13:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 6 6 C 1.32617 * 124.61011 * 60.00400 * 5 2 1 7 7 C 1.44595 * 113.14898 * 179.97438 * 6 5 2 8 8 C 1.43194 * 123.57667 * 180.02562 * 7 6 5 9 9 N 6.08661 * 95.63821 * 141.99402 * 2 1 3 10 10 C 1.36985 * 112.84168 * 359.97438 * 7 6 5 11 11 N 1.38799 * 124.64511 * 180.02562 * 10 7 6 12 12 C 1.34781 * 119.99693 * 180.02562 * 11 10 7 13 13 O 1.21281 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99678 * 180.02562 * 12 11 10 15 15 S 1.80995 * 109.46807 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99861 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00006 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00301 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99702 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00286 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47172 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47041 * 119.99615 * 20 18 16 23 23 H 1.48492 * 109.47151 * 240.00002 * 20 18 16 24 24 S 1.70446 * 110.70500 * 359.76667 * 10 7 6 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09004 * 109.47261 * 299.99863 * 4 2 1 32 32 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 33 33 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 34 34 H 1.07997 * 123.42406 * 359.97438 * 6 5 2 35 35 H 0.96993 * 120.00287 * 0.02562 * 11 10 7 36 36 H 1.08997 * 109.46488 * 299.99299 * 14 12 11 37 37 H 1.08994 * 109.47088 * 59.99404 * 14 12 11 38 38 H 0.97004 * 120.00078 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7689 -1.9751 1.5305 7 6 2.3771 -2.4038 2.7702 8 6 2.2384 -3.7249 3.3051 9 7 2.1280 -4.7727 3.7297 10 6 3.1011 -1.4124 3.3781 11 7 3.7855 -1.5570 4.5770 12 6 4.4694 -0.5161 5.0922 13 8 4.4871 0.5466 4.5081 14 6 5.2130 -0.6733 6.3936 15 16 6.0250 0.8880 6.8167 16 6 6.7946 0.4311 8.3345 17 1 6.6760 -0.5708 8.7198 18 6 7.5523 1.3591 9.0354 19 7 7.6964 2.5803 8.5659 20 14 8.3675 0.8749 10.6448 21 1 8.0543 -0.5440 10.9511 22 1 9.8382 1.0417 10.5246 23 1 7.8587 1.7417 11.7378 24 16 3.0520 0.0209 2.4570 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.1618 -2.6192 0.9117 35 1 3.7716 -2.4070 5.0439 36 1 4.5113 -0.9437 7.1825 37 1 5.9637 -1.4567 6.2907 38 1 8.2256 3.2290 9.0559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297633624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:36 Heat of formation + Delta-G solvation = 4.779040 kcal Electronic energy + Delta-G solvation = -21494.599365 eV Core-core repulsion = 18168.532992 eV Total energy + Delta-G solvation = -3326.066373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28036 -38.83224 -37.15641 -35.77583 -34.20831 -32.54846 -30.24320 -28.12460 -27.56529 -27.48466 -25.64779 -24.76632 -22.28077 -21.24001 -19.59974 -18.32092 -17.99657 -17.28959 -16.02544 -15.79026 -15.56300 -15.16374 -14.90524 -14.61289 -14.31608 -14.04824 -13.91885 -13.79164 -13.52623 -12.95881 -12.90956 -12.77058 -12.65951 -12.44344 -12.18026 -12.08475 -11.91050 -11.46742 -11.33511 -11.23322 -11.15626 -11.14771 -10.87213 -10.83170 -10.66482 -9.95464 -9.72249 -9.18570 -8.48604 -8.44916 -8.12465 -6.67141 -6.33962 -4.06743 0.63519 1.16383 1.84431 1.89682 2.54445 2.55345 2.61504 3.15178 3.17526 3.24250 3.38326 3.41153 3.97030 4.07463 4.41329 4.64364 4.72812 4.74298 4.87584 5.02267 5.07347 5.35022 5.37709 5.38336 5.51875 5.53188 5.58182 5.58186 5.63578 5.69334 5.81920 5.86543 5.92810 5.99292 6.06452 6.11700 6.18514 6.88853 7.44972 7.49145 7.84264 8.23632 9.12168 10.73465 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.002817 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.040898 B = 9936.372940 C =11099.048347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.010 3.990 3 C -0.155 4.155 4 C -0.138 4.138 5 C -0.246 4.246 6 C -0.072 4.072 7 C -0.137 4.137 8 C 0.281 3.719 9 N -0.436 5.436 10 C 0.068 3.932 11 N -0.638 5.638 12 C 0.527 3.473 13 O -0.473 6.473 14 C -0.153 4.153 15 S -0.050 6.050 16 C -0.538 4.538 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.866 5.866 20 Si 0.921 3.079 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 S 0.337 5.663 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.144 0.856 35 H 0.418 0.582 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.694 -5.305 -17.661 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 C -0.213 4.213 4 C -0.196 4.196 5 C -0.363 4.363 6 C -0.102 4.102 7 C -0.158 4.158 8 C -0.035 4.035 9 N -0.113 5.113 10 C -0.154 4.154 11 N -0.282 5.282 12 C 0.314 3.686 13 O -0.345 6.345 14 C -0.304 4.304 15 S 0.177 5.823 16 C -0.687 4.687 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.501 5.501 20 Si 0.747 3.253 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 S 0.601 5.399 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.256 0.744 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.051 -3.538 -17.650 21.663 hybrid contribution -0.071 -3.257 1.786 3.715 sum -12.121 -6.795 -15.865 21.090 Atomic orbital electron populations 1.21909 0.93351 1.02177 1.02115 1.18998 0.95518 0.94433 0.90267 1.22009 1.01792 0.94766 1.02750 1.21911 1.01578 1.00180 0.95891 1.24923 1.08463 0.99093 1.03817 1.20374 1.00698 0.95082 0.94006 1.15875 1.12194 0.87791 0.99956 1.24984 0.93152 0.92045 0.93283 1.81269 1.09961 1.11290 1.08794 1.22311 0.98194 1.02128 0.92793 1.43233 1.48417 1.16701 1.19823 1.20953 0.77841 0.82535 0.87238 1.90634 1.58628 1.25724 1.59559 1.23540 1.02704 1.09517 0.94599 1.85400 1.61960 1.06170 1.28820 1.22878 1.36979 1.00942 1.07851 0.90653 1.24996 0.95621 0.94438 0.98406 1.70006 1.37964 1.03518 1.38589 0.86085 0.78956 0.78709 0.81586 1.19569 1.20464 1.20460 1.84618 1.43501 1.03818 1.08008 0.92175 0.92172 0.92390 0.91806 0.91491 0.91792 0.92384 0.92175 0.92177 0.83848 0.74445 0.88181 0.88177 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.33 37.16 0.31 -0.58 16 2 C 0.01 0.07 0.90 -155.66 -0.14 -0.07 16 3 C -0.16 -1.15 7.54 37.16 0.28 -0.87 16 4 C -0.14 -0.89 8.33 37.16 0.31 -0.58 16 5 C -0.25 -2.31 5.09 -36.21 -0.18 -2.50 16 6 C -0.07 -0.69 9.37 -38.98 -0.37 -1.06 16 7 C -0.14 -1.58 5.88 -105.92 -0.62 -2.20 16 8 C 0.28 3.56 14.98 -22.48 -0.34 3.23 16 9 N -0.44 -6.28 18.54 41.84 0.78 -5.50 16 10 C 0.07 0.86 6.98 -14.85 -0.10 0.76 16 11 N -0.64 -8.38 5.37 -11.61 -0.06 -8.44 16 12 C 0.53 8.66 7.81 -10.98 -0.09 8.58 16 13 O -0.47 -8.92 13.29 5.56 0.07 -8.84 16 14 C -0.15 -2.78 6.16 36.01 0.22 -2.56 16 15 S -0.05 -1.25 20.57 -107.50 -2.21 -3.46 16 16 C -0.54 -14.56 9.50 30.94 0.29 -14.26 16 17 H 0.08 1.94 7.80 -52.48 -0.41 1.53 16 18 C 0.08 2.05 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.00 13.22 55.49 0.73 -24.27 16 20 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 S 0.34 4.00 18.35 -107.50 -1.97 2.02 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 28 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 31 H 0.06 0.36 7.89 -51.93 -0.41 -0.05 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.14 1.12 7.96 -52.49 -0.42 0.70 16 35 H 0.42 4.66 8.15 -40.82 -0.33 4.33 16 36 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -31.20 357.40 -7.72 -38.92 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.90 Total: -1.34 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.52 Total: -10.16 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 1.45 Total: -38.21 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -4.18 Total: -1.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.20 -7.72 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297633624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.700 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds