Wall clock time and date at job start Tue Mar 31 2020 13:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 6 6 C 1.32617 * 124.61011 * 60.00400 * 5 2 1 7 7 C 1.44595 * 113.14898 * 179.97438 * 6 5 2 8 8 C 1.43194 * 123.57667 * 180.02562 * 7 6 5 9 9 N 6.08661 * 95.63821 * 141.99402 * 2 1 3 10 10 C 1.36985 * 112.84168 * 359.97438 * 7 6 5 11 11 N 1.38799 * 124.64511 * 180.02562 * 10 7 6 12 12 C 1.34781 * 119.99693 * 180.02562 * 11 10 7 13 13 O 1.21281 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99678 * 180.02562 * 12 11 10 15 15 S 1.80995 * 109.46807 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99861 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00006 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00301 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99702 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00286 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47172 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47041 * 119.99615 * 20 18 16 23 23 H 1.48492 * 109.47151 * 240.00002 * 20 18 16 24 24 S 1.70446 * 110.70500 * 359.76667 * 10 7 6 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09004 * 109.47261 * 299.99863 * 4 2 1 32 32 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 33 33 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 34 34 H 1.07997 * 123.42406 * 359.97438 * 6 5 2 35 35 H 0.96993 * 120.00287 * 0.02562 * 11 10 7 36 36 H 1.08997 * 109.46488 * 299.99299 * 14 12 11 37 37 H 1.08994 * 109.47088 * 59.99404 * 14 12 11 38 38 H 0.97004 * 120.00078 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7689 -1.9751 1.5305 7 6 2.3771 -2.4038 2.7702 8 6 2.2384 -3.7249 3.3051 9 7 2.1280 -4.7727 3.7297 10 6 3.1011 -1.4124 3.3781 11 7 3.7855 -1.5570 4.5770 12 6 4.4694 -0.5161 5.0922 13 8 4.4871 0.5466 4.5081 14 6 5.2130 -0.6733 6.3936 15 16 6.0250 0.8880 6.8167 16 6 6.7946 0.4311 8.3345 17 1 6.6760 -0.5708 8.7198 18 6 7.5523 1.3591 9.0354 19 7 7.6964 2.5803 8.5659 20 14 8.3675 0.8749 10.6448 21 1 8.0543 -0.5440 10.9511 22 1 9.8382 1.0417 10.5246 23 1 7.8587 1.7417 11.7378 24 16 3.0520 0.0209 2.4570 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.1618 -2.6192 0.9117 35 1 3.7716 -2.4070 5.0439 36 1 4.5113 -0.9437 7.1825 37 1 5.9637 -1.4567 6.2907 38 1 8.2256 3.2290 9.0559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297633624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:36 Heat of formation + Delta-G solvation = -12.816151 kcal Electronic energy + Delta-G solvation = -21495.362350 eV Core-core repulsion = 18168.532992 eV Total energy + Delta-G solvation = -3326.829358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49475 -39.69500 -38.04079 -36.84638 -35.21943 -34.60413 -31.56551 -29.12097 -28.14610 -27.97849 -27.69050 -25.79254 -23.20413 -22.32636 -20.59359 -19.84593 -18.99769 -18.69837 -17.04519 -17.03860 -16.89718 -16.63697 -16.02152 -15.79370 -15.45259 -15.18666 -14.88310 -14.59722 -14.55254 -14.46066 -14.13169 -13.85708 -13.45417 -13.36735 -13.19838 -13.03242 -12.93173 -12.79424 -12.64683 -12.45281 -12.29341 -12.03694 -11.91940 -11.75837 -11.66232 -11.50596 -11.17546 -10.81496 -10.35142 -9.42512 -9.08288 -8.68785 -8.37558 -6.14948 -0.36901 0.23494 0.96672 0.99815 1.14908 1.28998 1.40422 1.41467 1.54417 1.59727 1.89519 2.23058 2.41650 2.97676 2.98383 3.19601 3.64653 3.75072 3.97562 4.07513 4.15500 4.16415 4.38358 4.42454 4.64746 4.79721 4.89421 4.90205 5.00265 5.01204 5.13043 5.13821 5.26646 5.29753 5.41502 5.43761 5.53796 5.55715 5.79823 6.18098 6.42535 6.62006 7.05197 8.71487 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.002817 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.040898 B = 9936.372940 C =11099.048347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 C -0.158 4.158 4 C -0.136 4.136 5 C -0.224 4.224 6 C -0.074 4.074 7 C -0.123 4.123 8 C 0.296 3.704 9 N -0.462 5.462 10 C 0.046 3.954 11 N -0.624 5.624 12 C 0.533 3.467 13 O -0.503 6.503 14 C -0.132 4.132 15 S -0.127 6.127 16 C -0.549 4.549 17 H 0.083 0.917 18 C 0.017 3.983 19 N -0.907 5.907 20 Si 0.995 3.005 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.274 1.274 24 S 0.305 5.695 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.170 0.830 35 H 0.428 0.572 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 -6.910 -18.531 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 C -0.216 4.216 4 C -0.194 4.194 5 C -0.341 4.341 6 C -0.102 4.102 7 C -0.144 4.144 8 C -0.018 4.018 9 N -0.140 5.140 10 C -0.175 4.175 11 N -0.269 5.269 12 C 0.320 3.680 13 O -0.378 6.378 14 C -0.283 4.283 15 S 0.100 5.900 16 C -0.697 4.697 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.544 5.544 20 Si 0.817 3.183 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.200 1.200 24 S 0.570 5.430 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.187 0.813 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.174 -5.173 -18.537 23.322 hybrid contribution 0.150 -2.806 1.885 3.384 sum -13.024 -7.979 -16.652 22.596 Atomic orbital electron populations 1.21915 0.92178 1.02799 1.02546 1.19139 0.96345 0.94217 0.89648 1.22042 1.01311 0.95018 1.03210 1.21917 1.01134 1.00649 0.95748 1.25128 1.06767 0.98829 1.03399 1.20598 1.00824 0.95364 0.93452 1.16026 1.11343 0.86872 1.00208 1.25041 0.92347 0.91910 0.92543 1.81293 1.10888 1.12177 1.09670 1.22381 0.99488 1.02725 0.92913 1.42827 1.47820 1.16158 1.20095 1.20514 0.78052 0.82840 0.86625 1.90643 1.59878 1.27005 1.60249 1.23346 1.03159 1.05551 0.96230 1.85478 1.63305 1.12084 1.29096 1.23226 1.36898 1.01302 1.08233 0.89918 1.26041 0.96246 0.94310 1.02205 1.70151 1.39063 1.04805 1.40354 0.84958 0.77752 0.78842 0.76750 1.18309 1.19977 1.19967 1.84807 1.44440 1.04519 1.09205 0.92938 0.90654 0.91669 0.92640 0.89771 0.92630 0.91663 0.90657 0.92935 0.81310 0.73291 0.86358 0.86356 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.33 71.98 0.60 -0.81 16 2 C 0.01 0.11 0.90 -52.93 -0.05 0.06 16 3 C -0.16 -2.13 7.54 71.98 0.54 -1.59 16 4 C -0.14 -1.40 8.33 71.98 0.60 -0.81 16 5 C -0.22 -3.83 5.09 24.53 0.12 -3.70 16 6 C -0.07 -1.24 9.37 22.73 0.21 -1.02 16 7 C -0.12 -2.60 5.88 -20.71 -0.12 -2.73 16 8 C 0.30 7.00 14.98 88.33 1.32 8.32 16 9 N -0.46 -12.62 18.54 19.00 0.35 -12.27 16 10 C 0.05 1.13 6.98 83.29 0.58 1.71 16 11 N -0.62 -15.89 5.37 -309.03 -1.66 -17.55 16 12 C 0.53 17.46 7.81 87.66 0.68 18.15 16 13 O -0.50 -19.39 13.29 -3.03 -0.04 -19.43 16 14 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 15 S -0.13 -6.50 20.57 -56.49 -1.16 -7.66 16 16 C -0.55 -29.86 9.50 67.96 0.65 -29.21 16 17 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 18 C 0.02 0.95 5.49 84.86 0.47 1.42 16 19 N -0.91 -53.52 13.22 21.65 0.29 -53.24 16 20 Si 0.99 42.37 29.55 68.60 2.03 44.39 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 S 0.31 7.18 18.35 -56.49 -1.04 6.14 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.59 7.88 -2.38 -0.02 0.57 16 28 H 0.05 0.84 7.92 -2.39 -0.02 0.82 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 31 H 0.06 0.59 7.89 -2.38 -0.02 0.57 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.17 2.02 7.96 -2.91 -0.02 2.00 16 35 H 0.43 8.97 8.15 -92.71 -0.76 8.21 16 36 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16 37 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -68.31 357.40 5.15 -63.15 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.34 Total: 10.97 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 6.05 Total: -14.50 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.02 Total: -83.06 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.04 Total: -19.43 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.20 Total: -1.52 kcal Total: -68.31 5.15 -63.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297633624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.338 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds