Wall clock time and date at job start Tue Mar 31 2020 14:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00554 * 2 1 4 4 H 1.48491 * 109.47467 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47087 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.47051 * 59.99774 * 3 2 1 7 7 C 1.37881 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00349 * 172.23215 * 7 2 1 9 9 C 1.50699 * 119.99730 * 352.22234 * 7 2 1 10 10 C 1.53001 * 115.55063 * 84.78843 * 9 7 2 11 11 S 1.81408 * 109.46971 * 65.19588 * 10 9 7 12 12 O 1.42100 * 110.53933 * 62.30234 * 11 10 9 13 13 O 1.42098 * 110.54187 * 285.55456 * 11 10 9 14 14 N 1.65595 * 104.44950 * 173.92498 * 11 10 9 15 15 C 1.47338 * 121.19141 * 269.97985 * 14 11 10 16 16 C 1.53536 * 107.52913 * 221.77028 * 15 14 11 17 17 O 1.42919 * 108.87071 * 301.79455 * 16 15 14 18 18 C 1.35821 * 117.80032 * 49.65272 * 17 16 15 19 19 N 1.32415 * 119.52755 * 159.69872 * 18 17 16 20 20 C 1.31928 * 121.82021 * 179.80540 * 19 18 17 21 21 C 1.38062 * 121.19679 * 0.02562 * 20 19 18 22 22 C 1.38868 * 119.15019 * 0.06713 * 21 20 19 23 23 C 1.38671 * 118.23758 * 359.97438 * 22 21 20 24 24 C 1.53006 * 117.49787 * 230.45679 * 9 7 2 25 25 C 1.52996 * 117.50179 * 299.11814 * 9 7 2 26 26 H 0.97001 * 119.99809 * 5.01853 * 1 2 3 27 27 H 1.09000 * 109.47139 * 305.19762 * 10 9 7 28 28 H 1.08999 * 109.47628 * 185.19368 * 10 9 7 29 29 H 1.08992 * 109.84107 * 102.26183 * 15 14 11 30 30 H 1.09004 * 109.84397 * 341.27906 * 15 14 11 31 31 H 1.08995 * 109.57004 * 181.97509 * 16 15 14 32 32 H 1.09001 * 109.56448 * 61.61096 * 16 15 14 33 33 H 1.07992 * 119.40725 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.42853 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.88354 * 179.97438 * 22 21 20 36 36 H 1.09004 * 117.49705 * 215.00010 * 24 9 7 37 37 H 1.08997 * 117.50177 * 0.02715 * 24 9 7 38 38 H 1.08997 * 117.50016 * 359.97438 * 25 9 7 39 39 H 1.09001 * 117.50427 * 144.97353 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0770 -1.1984 -0.1269 9 6 1.2613 -2.4932 0.1755 10 6 0.6666 -3.0915 -1.1010 11 16 2.0068 -3.5627 -2.2292 12 8 2.8247 -4.5647 -1.6408 13 8 2.5794 -2.4103 -2.8320 14 7 1.2430 -4.3394 -3.4764 15 6 1.0166 -5.7949 -3.4444 16 6 1.3183 -6.3408 -4.8474 17 8 0.4708 -5.6828 -5.7915 18 6 0.4103 -4.3265 -5.7510 19 7 -0.0134 -3.6601 -6.8138 20 6 -0.0938 -2.3433 -6.8228 21 6 0.2633 -1.5976 -5.7171 22 6 0.7159 -2.2506 -4.5782 23 6 0.7895 -3.6351 -4.6013 24 6 1.7804 -3.4659 1.2364 25 6 0.4826 -2.6908 1.4776 26 1 -0.4850 0.8368 -0.0735 27 1 0.0272 -2.3531 -1.5847 28 1 0.0772 -3.9731 -0.8488 29 1 -0.0207 -6.0022 -3.1818 30 1 1.6830 -6.2572 -2.7162 31 1 1.1271 -7.4136 -4.8707 32 1 2.3617 -6.1485 -5.0973 33 1 -0.4452 -1.8395 -7.7110 34 1 0.1922 -0.5201 -5.7379 35 1 1.0030 -1.6949 -3.6977 36 1 1.6982 -4.5321 1.0249 37 1 2.6591 -3.1661 1.8073 38 1 0.5081 -1.8814 2.2071 39 1 -0.4536 -3.2467 1.4248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329597288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:40 Heat of formation + Delta-G solvation = -24.038583 kcal Electronic energy + Delta-G solvation = -26530.787886 eV Core-core repulsion = 22760.719016 eV Total energy + Delta-G solvation = -3770.068870 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03307 -38.31041 -36.94008 -36.70654 -36.10280 -35.37776 -32.17184 -31.74955 -31.12373 -28.44620 -27.80029 -25.59859 -24.81148 -23.69706 -21.40974 -21.33441 -19.75882 -18.94410 -18.52333 -17.56479 -17.43867 -16.64936 -16.03587 -15.57134 -15.43755 -15.09091 -14.87021 -14.69103 -14.34814 -14.02379 -13.96408 -13.58290 -13.28103 -13.10746 -12.37637 -12.15618 -12.08111 -11.95510 -11.67892 -11.49376 -11.33387 -11.19234 -11.10441 -11.04847 -10.89689 -10.72201 -10.57882 -10.24924 -9.82481 -9.40912 -9.11484 -9.08101 -8.69923 -8.30536 -7.94460 -6.26093 -4.38050 0.58822 1.21432 1.36928 2.72143 2.85881 3.20456 3.29266 3.35929 3.84434 4.18226 4.26837 4.30282 4.34111 4.58439 4.73481 4.84664 4.91686 4.98623 5.01148 5.05696 5.16828 5.29635 5.43114 5.50419 5.51636 5.63576 5.81738 6.00060 6.09251 6.21638 6.32544 6.42576 6.45383 6.54639 6.58679 6.84891 7.07418 7.11248 7.26462 7.68591 8.05711 8.05921 8.68717 9.34280 10.81279 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.005565 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.000251 B = 5030.400607 C = 6199.603215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.083 3.917 3 Si 0.892 3.108 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.040 3.960 10 C -0.544 4.544 11 S 2.591 3.409 12 O -0.957 6.957 13 O -0.932 6.932 14 N -0.947 5.947 15 C 0.065 3.935 16 C 0.058 3.942 17 O -0.300 6.300 18 C 0.294 3.706 19 N -0.480 5.480 20 C 0.102 3.898 21 C -0.165 4.165 22 C -0.089 4.089 23 C 0.070 3.930 24 C -0.208 4.208 25 C -0.137 4.137 26 H 0.265 0.735 27 H 0.138 0.862 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 -8.583 -7.896 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.123 4.123 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.037 3.963 10 C -0.678 4.678 11 S 2.693 3.307 12 O -0.948 6.948 13 O -0.922 6.922 14 N -0.770 5.770 15 C -0.059 4.059 16 C -0.019 4.019 17 O -0.209 6.209 18 C 0.111 3.889 19 N -0.200 5.200 20 C -0.055 4.055 21 C -0.186 4.186 22 C -0.118 4.118 23 C -0.029 4.029 24 C -0.245 4.245 25 C -0.176 4.176 26 H 0.074 0.926 27 H 0.156 0.844 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.187 0.813 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.323 -9.046 -8.569 12.531 hybrid contribution -0.021 1.398 1.103 1.781 sum -1.344 -7.648 -7.467 10.773 Atomic orbital electron populations 1.69977 1.06051 1.27340 1.47319 1.24965 0.94814 0.99299 0.93187 0.86516 0.80753 0.83035 0.77837 1.19188 1.20483 1.20716 1.20559 0.93755 0.88454 1.52905 0.91199 1.18322 0.99348 0.94539 0.84087 1.29998 1.15709 1.08801 1.13288 1.06027 0.76947 0.73771 0.74000 1.93498 1.64709 1.59301 1.77264 1.93535 1.75141 1.49298 1.74195 1.56557 1.72943 1.15872 1.31671 1.22499 1.04135 0.79476 0.99838 1.23308 0.94390 0.97468 0.86769 1.85893 1.63548 1.14874 1.56627 1.18939 0.97892 0.84063 0.88004 1.66818 1.17328 1.10136 1.25692 1.22400 0.97336 0.87294 0.98445 1.21971 1.01224 1.01916 0.93464 1.22023 0.96305 0.91380 1.02049 1.18373 1.03877 0.92515 0.88170 1.23223 0.98869 0.95956 1.06454 1.22569 0.92597 1.01039 1.01438 0.92573 0.84430 0.87983 0.89253 0.86061 0.85421 0.90790 0.81919 0.83753 0.81337 0.90665 0.89316 0.89353 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.83 12.98 55.43 0.72 -22.11 16 2 C 0.08 2.15 5.38 -17.82 -0.10 2.06 16 3 Si 0.89 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.49 8.18 -34.44 -0.28 -13.77 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C 0.04 0.92 1.32 -155.66 -0.21 0.71 16 10 C -0.54 -10.85 6.03 37.16 0.22 -10.63 16 11 S 2.59 50.54 4.74 -107.50 -0.51 50.03 16 12 O -0.96 -19.54 16.64 -57.54 -0.96 -20.49 16 13 O -0.93 -20.85 14.20 -57.54 -0.82 -21.67 16 14 N -0.95 -15.33 3.25 -57.54 -0.19 -15.52 16 15 C 0.07 0.79 6.73 -3.31 -0.02 0.77 16 16 C 0.06 0.64 7.17 37.44 0.27 0.90 16 17 O -0.30 -4.40 10.41 -19.18 -0.20 -4.60 16 18 C 0.29 4.83 7.58 -16.86 -0.13 4.70 16 19 N -0.48 -7.66 10.38 -13.14 -0.14 -7.80 16 20 C 0.10 1.36 11.16 -17.57 -0.20 1.17 16 21 C -0.17 -2.33 10.12 -39.41 -0.40 -2.73 16 22 C -0.09 -1.53 8.68 -39.19 -0.34 -1.87 16 23 C 0.07 1.19 6.26 -83.41 -0.52 0.66 16 24 C -0.21 -4.30 9.96 -26.69 -0.27 -4.56 16 25 C -0.14 -2.96 9.49 -26.69 -0.25 -3.21 16 26 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 27 H 0.14 2.87 8.14 -51.92 -0.42 2.45 16 28 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.33 6.92 -51.93 -0.36 0.97 16 31 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.17 3.20 5.53 -52.49 -0.29 2.91 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -32.16 339.46 -9.06 -41.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.84 Total: 6.19 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.22 Total: -25.80 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.40 Total: -45.43 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.97 Total: -46.76 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.51 Total: 50.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.16 -9.06 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329597288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.173 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds