Wall clock time and date at job start Tue Mar 31 2020 14:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00554 * 2 1 4 4 H 1.48491 * 109.47467 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47087 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.47051 * 59.99774 * 3 2 1 7 7 C 1.37881 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00349 * 172.23215 * 7 2 1 9 9 C 1.50699 * 119.99730 * 352.22234 * 7 2 1 10 10 C 1.53001 * 115.55063 * 84.78843 * 9 7 2 11 11 S 1.81408 * 109.46971 * 65.19588 * 10 9 7 12 12 O 1.42100 * 110.53933 * 62.30234 * 11 10 9 13 13 O 1.42098 * 110.54187 * 285.55456 * 11 10 9 14 14 N 1.65595 * 104.44950 * 173.92498 * 11 10 9 15 15 C 1.47338 * 121.19141 * 269.97985 * 14 11 10 16 16 C 1.53536 * 107.52913 * 221.77028 * 15 14 11 17 17 O 1.42919 * 108.87071 * 301.79455 * 16 15 14 18 18 C 1.35821 * 117.80032 * 49.65272 * 17 16 15 19 19 N 1.32415 * 119.52755 * 159.69872 * 18 17 16 20 20 C 1.31928 * 121.82021 * 179.80540 * 19 18 17 21 21 C 1.38062 * 121.19679 * 0.02562 * 20 19 18 22 22 C 1.38868 * 119.15019 * 0.06713 * 21 20 19 23 23 C 1.38671 * 118.23758 * 359.97438 * 22 21 20 24 24 C 1.53006 * 117.49787 * 230.45679 * 9 7 2 25 25 C 1.52996 * 117.50179 * 299.11814 * 9 7 2 26 26 H 0.97001 * 119.99809 * 5.01853 * 1 2 3 27 27 H 1.09000 * 109.47139 * 305.19762 * 10 9 7 28 28 H 1.08999 * 109.47628 * 185.19368 * 10 9 7 29 29 H 1.08992 * 109.84107 * 102.26183 * 15 14 11 30 30 H 1.09004 * 109.84397 * 341.27906 * 15 14 11 31 31 H 1.08995 * 109.57004 * 181.97509 * 16 15 14 32 32 H 1.09001 * 109.56448 * 61.61096 * 16 15 14 33 33 H 1.07992 * 119.40725 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.42853 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.88354 * 179.97438 * 22 21 20 36 36 H 1.09004 * 117.49705 * 215.00010 * 24 9 7 37 37 H 1.08997 * 117.50177 * 0.02715 * 24 9 7 38 38 H 1.08997 * 117.50016 * 359.97438 * 25 9 7 39 39 H 1.09001 * 117.50427 * 144.97353 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0770 -1.1984 -0.1269 9 6 1.2613 -2.4932 0.1755 10 6 0.6666 -3.0915 -1.1010 11 16 2.0068 -3.5627 -2.2292 12 8 2.8247 -4.5647 -1.6408 13 8 2.5794 -2.4103 -2.8320 14 7 1.2430 -4.3394 -3.4764 15 6 1.0166 -5.7949 -3.4444 16 6 1.3183 -6.3408 -4.8474 17 8 0.4708 -5.6828 -5.7915 18 6 0.4103 -4.3265 -5.7510 19 7 -0.0134 -3.6601 -6.8138 20 6 -0.0938 -2.3433 -6.8228 21 6 0.2633 -1.5976 -5.7171 22 6 0.7159 -2.2506 -4.5782 23 6 0.7895 -3.6351 -4.6013 24 6 1.7804 -3.4659 1.2364 25 6 0.4826 -2.6908 1.4776 26 1 -0.4850 0.8368 -0.0735 27 1 0.0272 -2.3531 -1.5847 28 1 0.0772 -3.9731 -0.8488 29 1 -0.0207 -6.0022 -3.1818 30 1 1.6830 -6.2572 -2.7162 31 1 1.1271 -7.4136 -4.8707 32 1 2.3617 -6.1485 -5.0973 33 1 -0.4452 -1.8395 -7.7110 34 1 0.1922 -0.5201 -5.7379 35 1 1.0030 -1.6949 -3.6977 36 1 1.6982 -4.5321 1.0249 37 1 2.6591 -3.1661 1.8073 38 1 0.5081 -1.8814 2.2071 39 1 -0.4536 -3.2467 1.4248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329597288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:40 Heat of formation + Delta-G solvation = -47.535941 kcal Electronic energy + Delta-G solvation = -26531.806808 eV Core-core repulsion = 22760.719016 eV Total energy + Delta-G solvation = -3771.087792 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15256 -39.40441 -38.64883 -38.27758 -37.35476 -36.89946 -34.12490 -32.91508 -32.15469 -30.03640 -28.92400 -27.53655 -25.86115 -24.90546 -23.03595 -22.47479 -21.47072 -20.36698 -19.63660 -18.97775 -18.61040 -18.35645 -17.24537 -17.10894 -16.81016 -16.54449 -16.36016 -16.05224 -15.67580 -15.39282 -15.15906 -14.92129 -14.60674 -14.36818 -13.83375 -13.76885 -13.51310 -13.42427 -13.28453 -13.04356 -12.88398 -12.84943 -12.49675 -12.41755 -12.34894 -12.25682 -12.00898 -11.90686 -11.57710 -10.92424 -10.60859 -10.56728 -10.30856 -9.98542 -9.12603 -8.22758 -6.38231 -0.90860 0.07464 0.15410 1.35652 1.39990 1.43917 1.50224 1.79732 2.37110 2.62424 2.82362 2.95461 3.05990 3.20608 3.31071 3.35218 3.71380 3.81287 3.95235 3.99650 4.02897 4.09537 4.20111 4.34626 4.43817 4.45475 4.54063 4.63972 4.66665 4.75951 4.85936 4.94289 5.13007 5.16356 5.30153 5.39280 5.47464 5.55481 5.68207 5.99314 6.17117 6.68642 6.93189 7.35051 8.84255 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.005565 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.000251 B = 5030.400607 C = 6199.603215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.008 3.992 10 C -0.541 4.541 11 S 2.610 3.390 12 O -0.970 6.970 13 O -0.970 6.970 14 N -0.945 5.945 15 C 0.052 3.948 16 C 0.054 3.946 17 O -0.308 6.308 18 C 0.287 3.713 19 N -0.497 5.497 20 C 0.113 3.887 21 C -0.165 4.165 22 C -0.116 4.116 23 C 0.053 3.947 24 C -0.194 4.194 25 C -0.136 4.136 26 H 0.267 0.733 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.175 0.825 32 H 0.070 0.930 33 H 0.207 0.793 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -9.882 -8.948 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.157 4.157 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.005 3.995 10 C -0.675 4.675 11 S 2.711 3.289 12 O -0.960 6.960 13 O -0.960 6.960 14 N -0.771 5.771 15 C -0.071 4.071 16 C -0.022 4.022 17 O -0.217 6.217 18 C 0.104 3.896 19 N -0.217 5.217 20 C -0.044 4.044 21 C -0.185 4.185 22 C -0.145 4.145 23 C -0.046 4.046 24 C -0.232 4.232 25 C -0.175 4.175 26 H 0.076 0.924 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.193 0.807 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.138 -10.357 -9.598 14.281 hybrid contribution 0.238 1.758 1.376 2.245 sum -1.901 -8.599 -8.222 12.048 Atomic orbital electron populations 1.70018 1.06601 1.27880 1.48023 1.25486 0.95548 1.01456 0.93225 0.85874 0.79422 0.80577 0.78227 1.19851 1.19908 1.19822 1.20702 0.93140 0.90450 1.52989 0.93226 1.18425 1.00674 0.94565 0.85800 1.29854 1.15918 1.09646 1.12107 1.05209 0.76655 0.73027 0.74006 1.93468 1.65278 1.59378 1.77908 1.93488 1.76323 1.51221 1.74965 1.56182 1.72839 1.17476 1.30563 1.22955 1.05978 0.77024 1.01132 1.23699 0.93878 0.99453 0.85215 1.85897 1.64199 1.13922 1.57666 1.19115 0.97783 0.84876 0.87808 1.66948 1.17803 1.11289 1.25639 1.23095 0.95376 0.86564 0.99330 1.22296 1.00241 1.03277 0.92683 1.22043 0.97947 0.91975 1.02506 1.18451 1.04946 0.92524 0.88672 1.23284 0.98221 0.96982 1.04667 1.22528 0.93940 1.00898 1.00136 0.92404 0.85856 0.84635 0.86952 0.84851 0.80733 0.91120 0.77661 0.81347 0.83822 0.87989 0.89710 0.91368 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.17 12.98 21.45 0.28 -46.89 16 2 C 0.05 2.45 5.38 84.66 0.46 2.90 16 3 Si 0.93 42.51 29.55 68.60 2.03 44.54 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -28.48 8.18 25.60 0.21 -28.27 16 8 H 0.05 2.76 7.83 -2.91 -0.02 2.73 16 9 C 0.01 0.36 1.32 -52.93 -0.07 0.29 16 10 C -0.54 -21.46 6.03 71.98 0.43 -21.03 16 11 S 2.61 102.08 4.74 -56.49 -0.27 101.81 16 12 O -0.97 -38.96 16.64 -127.65 -2.12 -41.08 16 13 O -0.97 -44.97 14.20 -127.65 -1.81 -46.79 16 14 N -0.94 -29.90 3.25 -335.97 -1.09 -31.00 16 15 C 0.05 1.15 6.73 86.40 0.58 1.73 16 16 C 0.05 1.04 7.17 72.16 0.52 1.56 16 17 O -0.31 -8.39 10.41 -91.55 -0.95 -9.34 16 18 C 0.29 9.06 7.58 84.89 0.64 9.71 16 19 N -0.50 -14.98 10.38 -308.19 -3.20 -18.18 16 20 C 0.11 2.76 11.16 84.64 0.94 3.71 16 21 C -0.16 -4.47 10.12 22.38 0.23 -4.25 16 22 C -0.12 -4.03 8.68 22.52 0.20 -3.83 16 23 C 0.05 1.79 6.26 38.18 0.24 2.03 16 24 C -0.19 -7.85 9.96 30.62 0.30 -7.54 16 25 C -0.14 -5.78 9.49 30.62 0.29 -5.49 16 26 H 0.27 13.43 8.32 -92.71 -0.77 12.65 16 27 H 0.12 5.26 8.14 -2.39 -0.02 5.24 16 28 H 0.14 4.28 8.09 -2.39 -0.02 4.26 16 29 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.13 2.59 6.92 -2.39 -0.02 2.57 16 31 H 0.18 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.14 5.74 5.53 -2.91 -0.02 5.72 16 36 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -70.74 339.46 -1.10 -71.84 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.07 Total: 23.58 kcal Atomic # 6 Polarization: -53.47 SS G_CDS: 4.97 Total: -48.49 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -4.01 Total: -96.07 kcal Atomic # 8 Polarization: -92.32 SS G_CDS: -4.89 Total: -97.21 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 102.08 SS G_CDS: -0.27 Total: 101.81 kcal Total: -70.74 -1.10 -71.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329597288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.301 kcal (2) G-P(sol) polarization free energy of solvation -70.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds