Wall clock time and date at job start Tue Mar 31 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.46977 * 274.96681 * 3 2 1 5 5 H 1.48502 * 109.47421 * 34.96901 * 3 2 1 6 6 H 1.48501 * 109.47212 * 154.97508 * 3 2 1 7 7 C 1.39878 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99918 * 149.88169 * 7 2 1 9 9 C 1.41145 * 119.99857 * 329.88044 * 7 2 1 10 10 C 1.40874 * 120.15608 * 159.34975 * 9 7 2 11 11 C 1.36363 * 119.82965 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16442 * 0.02562 * 11 10 9 13 13 N 1.39110 * 119.83640 * 179.97438 * 12 11 10 14 14 C 1.37549 * 120.00029 * 143.34166 * 13 12 11 15 15 O 1.35112 * 120.00197 * 353.77022 * 14 13 12 16 16 N 1.30083 * 120.00117 * 173.76973 * 14 13 12 17 17 C 1.46497 * 119.99729 * 173.83553 * 16 14 13 18 18 H 1.08996 * 110.01792 * 3.77635 * 17 16 14 19 19 C 1.53878 * 110.02604 * 242.34162 * 17 16 14 20 20 C 1.54160 * 108.70684 * 193.53318 * 19 17 16 21 21 S 1.82922 * 105.08747 * 27.90776 * 20 19 17 22 22 O 1.42093 * 109.35597 * 244.48158 * 21 20 19 23 23 O 1.42105 * 109.47389 * 111.30985 * 21 20 19 24 24 C 1.55051 * 110.02609 * 125.15601 * 17 16 14 25 25 C 1.39520 * 120.32716 * 0.25037 * 12 11 10 26 26 C 1.36362 * 120.16399 * 359.48437 * 25 12 11 27 27 H 0.97003 * 120.00544 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.09151 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.91612 * 179.97438 * 11 10 9 30 30 H 0.96997 * 120.00095 * 323.61390 * 13 12 11 31 31 H 0.96701 * 113.99993 * 274.55722 * 15 14 13 32 32 H 1.09004 * 109.64909 * 313.38757 * 19 17 16 33 33 H 1.08999 * 109.64727 * 73.67757 * 19 17 16 34 34 H 1.09005 * 110.32096 * 269.00662 * 20 19 17 35 35 H 1.08998 * 110.32120 * 146.81210 * 20 19 17 36 36 H 1.09006 * 110.78925 * 279.99142 * 24 17 16 37 37 H 1.09002 * 110.79192 * 43.25950 * 24 17 16 38 38 H 1.08000 * 119.91916 * 179.73185 * 25 12 11 39 39 H 1.08000 * 120.08215 * 180.25147 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3853 2.1071 -1.3949 5 1 1.4967 2.6201 0.8024 6 1 3.5890 1.4123 0.5922 7 6 2.0084 -1.2113 0.0005 8 1 2.9790 -1.2746 -0.4687 9 6 1.4456 -2.3509 0.6144 10 6 1.8973 -3.6387 0.2650 11 6 1.3485 -4.7351 0.8619 12 6 0.3419 -4.5838 1.8161 13 7 -0.2134 -5.7070 2.4203 14 6 -0.5727 -5.6672 3.7475 15 8 -0.2722 -4.5836 4.4965 16 7 -1.2017 -6.6728 4.2815 17 6 -1.4649 -6.6904 5.7225 18 1 -1.1261 -5.7585 6.1751 19 6 -0.7475 -7.8854 6.3747 20 6 -1.3056 -8.0801 7.7985 21 16 -3.0168 -7.4370 7.7312 22 8 -3.1272 -6.3025 8.5796 23 8 -3.9334 -8.5143 7.8670 24 6 -2.9806 -6.8870 5.9831 25 6 -0.1145 -3.3118 2.1630 26 6 0.4286 -2.2060 1.5784 27 1 -0.4851 0.8400 -0.0004 28 1 2.6755 -3.7575 -0.4743 29 1 1.6934 -5.7231 0.5948 30 1 -0.3437 -6.5195 1.9068 31 1 0.6160 -4.6034 4.8783 32 1 -0.9245 -8.7852 5.7854 33 1 0.3232 -7.6873 6.4247 34 1 -0.7156 -7.5116 8.5174 35 1 -1.3089 -9.1376 8.0624 36 1 -3.5191 -5.9470 5.8620 37 1 -3.3902 -7.6532 5.3248 38 1 -0.8970 -3.2025 2.8992 39 1 0.0771 -1.2218 1.8509 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330371672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:50 Heat of formation + Delta-G solvation = -62.706305 kcal Electronic energy + Delta-G solvation = -24289.130241 eV Core-core repulsion = 20517.384613 eV Total energy + Delta-G solvation = -3771.745629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.58341 -37.78107 -37.20169 -36.56824 -36.12069 -34.92659 -33.45073 -32.13353 -29.81053 -29.66295 -28.72600 -25.49280 -24.56470 -22.30011 -21.48991 -20.58244 -20.30546 -19.01470 -17.98706 -17.57006 -17.37312 -16.84313 -16.26451 -15.88724 -15.57550 -15.40681 -14.98856 -14.59882 -14.15749 -14.09516 -13.48380 -13.11544 -12.83402 -12.64001 -12.47436 -12.31938 -12.27994 -12.18735 -12.12979 -11.93480 -11.79293 -11.33545 -11.27161 -11.12699 -10.93686 -10.84887 -10.66800 -10.35931 -10.03343 -9.58364 -9.38750 -9.19385 -8.55550 -7.75153 -7.20583 -6.93878 -4.42384 -0.13982 2.10787 2.37596 2.68163 2.89984 2.96957 2.99014 3.09483 3.36700 3.43826 3.77953 3.81100 4.16642 4.35164 4.42280 4.51757 4.58178 4.66836 4.81509 5.20831 5.37255 5.44461 5.47900 5.67657 5.78257 5.79856 6.01803 6.17843 6.70671 6.76950 6.85775 6.98057 7.08330 7.32348 7.38960 7.52595 7.78083 7.85641 8.02605 8.12724 8.40002 8.61263 8.68279 8.82993 9.89524 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.002383 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.865859 B =11746.212299 C =12337.257800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.084 3.916 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.109 3.891 10 C -0.220 4.220 11 C -0.091 4.091 12 C -0.025 4.025 13 N -0.626 5.626 14 C 0.574 3.426 15 O -0.523 6.523 16 N -0.620 5.620 17 C 0.103 3.897 18 H 0.076 0.924 19 C -0.107 4.107 20 C -0.590 4.590 21 S 2.387 3.613 22 O -0.940 6.940 23 O -0.943 6.943 24 C -0.571 4.571 25 C -0.088 4.088 26 C -0.168 4.168 27 H 0.285 0.715 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.412 0.588 31 H 0.401 0.599 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -10.470 10.070 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.240 4.240 11 C -0.112 4.112 12 C -0.118 4.118 13 N -0.263 5.263 14 C 0.262 3.738 15 O -0.326 6.326 16 N -0.370 5.370 17 C -0.011 4.011 18 H 0.094 0.906 19 C -0.146 4.146 20 C -0.721 4.721 21 S 2.571 3.429 22 O -0.937 6.937 23 O -0.940 6.940 24 C -0.702 4.702 25 C -0.108 4.108 26 C -0.188 4.188 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.249 0.751 31 H 0.260 0.740 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.117 0.883 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.608 -10.583 10.524 15.011 hybrid contribution 1.548 1.048 -0.333 1.899 sum -0.060 -9.535 10.190 13.956 Atomic orbital electron populations 1.69924 1.08056 1.30106 1.30785 1.25983 0.94460 1.01725 0.91686 0.86431 0.81312 0.80605 0.79309 1.19377 1.19788 1.18083 1.19558 1.03992 0.93332 1.31713 0.89953 1.17620 0.90282 0.91833 0.89643 1.20487 1.06125 0.92195 1.05226 1.20031 0.95599 0.97405 0.98146 1.17060 1.03260 0.85283 1.06245 1.41585 1.62946 1.15251 1.06510 1.20633 0.87905 0.81160 0.84088 1.84791 1.38231 1.43785 1.65786 1.72689 1.30607 1.23806 1.09868 1.21610 0.90169 0.97962 0.91391 0.90638 1.21963 1.01783 1.00261 0.90630 1.30447 1.23300 1.13058 1.05248 1.09021 0.78616 0.76145 0.79134 1.93619 1.85965 1.50491 1.63642 1.93604 1.59875 1.54674 1.85845 1.30716 1.04269 1.12913 1.22312 1.20405 0.99088 0.91510 0.99842 1.20772 1.01589 0.97043 0.99389 0.90369 0.88536 0.89047 0.75054 0.74015 0.89003 0.89583 0.84676 0.84449 0.84847 0.83861 0.88252 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.51 11.51 55.54 0.64 -17.87 16 2 C 0.08 1.95 4.86 -17.34 -0.08 1.86 16 3 Si 0.90 17.21 29.65 -169.99 -5.04 12.17 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 7 C -0.46 -11.22 8.96 -37.87 -0.34 -11.56 16 8 H 0.08 1.93 8.00 -52.49 -0.42 1.51 16 9 C 0.11 2.67 5.59 -106.80 -0.60 2.07 16 10 C -0.22 -4.87 9.74 -39.26 -0.38 -5.25 16 11 C -0.09 -1.79 9.90 -39.78 -0.39 -2.19 16 12 C -0.03 -0.49 6.24 -83.60 -0.52 -1.01 16 13 N -0.63 -10.00 5.41 -11.67 -0.06 -10.06 16 14 C 0.57 8.58 8.22 -88.38 -0.73 7.85 16 15 O -0.52 -7.42 9.21 -17.04 -0.16 -7.58 16 16 N -0.62 -8.53 10.29 -54.45 -0.56 -9.09 16 17 C 0.10 1.13 3.24 -66.39 -0.21 0.91 16 18 H 0.08 0.81 6.78 -51.93 -0.35 0.46 16 19 C -0.11 -0.88 6.03 -25.67 -0.15 -1.04 16 20 C -0.59 -3.96 7.26 37.76 0.27 -3.68 16 21 S 2.39 22.94 6.10 -107.50 -0.66 22.28 16 22 O -0.94 -12.36 18.14 -57.73 -1.05 -13.41 16 23 O -0.94 -12.04 18.15 -57.73 -1.05 -13.08 16 24 C -0.57 -5.76 6.96 38.24 0.27 -5.49 16 25 C -0.09 -1.89 8.51 -39.78 -0.34 -2.23 16 26 C -0.17 -4.02 8.72 -39.26 -0.34 -4.36 16 27 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 28 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.09 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.41 5.89 8.93 -40.82 -0.36 5.52 16 31 H 0.40 4.08 9.06 45.56 0.41 4.49 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.14 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.10 2.10 6.62 -52.49 -0.35 1.75 16 39 H 0.11 2.76 6.34 -52.49 -0.33 2.43 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -31.49 343.00 -10.24 -41.73 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -3.92 Total: 13.85 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -3.56 Total: -24.11 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.02 Total: -37.02 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -2.25 Total: -34.07 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.04 Total: 12.17 kcal Atomic # 16 Polarization: 22.94 SS G_CDS: -0.66 Total: 22.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.49 -10.24 -41.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.974 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds