Wall clock time and date at job start Tue Mar 31 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.46977 * 274.96681 * 3 2 1 5 5 H 1.48502 * 109.47421 * 34.96901 * 3 2 1 6 6 H 1.48501 * 109.47212 * 154.97508 * 3 2 1 7 7 C 1.39878 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99918 * 149.88169 * 7 2 1 9 9 C 1.41145 * 119.99857 * 329.88044 * 7 2 1 10 10 C 1.40874 * 120.15608 * 159.34975 * 9 7 2 11 11 C 1.36363 * 119.82965 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16442 * 0.02562 * 11 10 9 13 13 N 1.39110 * 119.83640 * 179.97438 * 12 11 10 14 14 C 1.37549 * 120.00029 * 143.34166 * 13 12 11 15 15 O 1.35112 * 120.00197 * 353.77022 * 14 13 12 16 16 N 1.30083 * 120.00117 * 173.76973 * 14 13 12 17 17 C 1.46497 * 119.99729 * 173.83553 * 16 14 13 18 18 H 1.08996 * 110.01792 * 3.77635 * 17 16 14 19 19 C 1.53878 * 110.02604 * 242.34162 * 17 16 14 20 20 C 1.54160 * 108.70684 * 193.53318 * 19 17 16 21 21 S 1.82922 * 105.08747 * 27.90776 * 20 19 17 22 22 O 1.42093 * 109.35597 * 244.48158 * 21 20 19 23 23 O 1.42105 * 109.47389 * 111.30985 * 21 20 19 24 24 C 1.55051 * 110.02609 * 125.15601 * 17 16 14 25 25 C 1.39520 * 120.32716 * 0.25037 * 12 11 10 26 26 C 1.36362 * 120.16399 * 359.48437 * 25 12 11 27 27 H 0.97003 * 120.00544 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.09151 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.91612 * 179.97438 * 11 10 9 30 30 H 0.96997 * 120.00095 * 323.61390 * 13 12 11 31 31 H 0.96701 * 113.99993 * 274.55722 * 15 14 13 32 32 H 1.09004 * 109.64909 * 313.38757 * 19 17 16 33 33 H 1.08999 * 109.64727 * 73.67757 * 19 17 16 34 34 H 1.09005 * 110.32096 * 269.00662 * 20 19 17 35 35 H 1.08998 * 110.32120 * 146.81210 * 20 19 17 36 36 H 1.09006 * 110.78925 * 279.99142 * 24 17 16 37 37 H 1.09002 * 110.79192 * 43.25950 * 24 17 16 38 38 H 1.08000 * 119.91916 * 179.73185 * 25 12 11 39 39 H 1.08000 * 120.08215 * 180.25147 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3853 2.1071 -1.3949 5 1 1.4967 2.6201 0.8024 6 1 3.5890 1.4123 0.5922 7 6 2.0084 -1.2113 0.0005 8 1 2.9790 -1.2746 -0.4687 9 6 1.4456 -2.3509 0.6144 10 6 1.8973 -3.6387 0.2650 11 6 1.3485 -4.7351 0.8619 12 6 0.3419 -4.5838 1.8161 13 7 -0.2134 -5.7070 2.4203 14 6 -0.5727 -5.6672 3.7475 15 8 -0.2722 -4.5836 4.4965 16 7 -1.2017 -6.6728 4.2815 17 6 -1.4649 -6.6904 5.7225 18 1 -1.1261 -5.7585 6.1751 19 6 -0.7475 -7.8854 6.3747 20 6 -1.3056 -8.0801 7.7985 21 16 -3.0168 -7.4370 7.7312 22 8 -3.1272 -6.3025 8.5796 23 8 -3.9334 -8.5143 7.8670 24 6 -2.9806 -6.8870 5.9831 25 6 -0.1145 -3.3118 2.1630 26 6 0.4286 -2.2060 1.5784 27 1 -0.4851 0.8400 -0.0004 28 1 2.6755 -3.7575 -0.4743 29 1 1.6934 -5.7231 0.5948 30 1 -0.3437 -6.5195 1.9068 31 1 0.6160 -4.6034 4.8783 32 1 -0.9245 -8.7852 5.7854 33 1 0.3232 -7.6873 6.4247 34 1 -0.7156 -7.5116 8.5174 35 1 -1.3089 -9.1376 8.0624 36 1 -3.5191 -5.9470 5.8620 37 1 -3.3902 -7.6532 5.3248 38 1 -0.8970 -3.2025 2.8992 39 1 0.0771 -1.2218 1.8509 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330371672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:50 Heat of formation + Delta-G solvation = -88.927144 kcal Electronic energy + Delta-G solvation = -24290.267262 eV Core-core repulsion = 20517.384613 eV Total energy + Delta-G solvation = -3772.882650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83396 -39.24952 -38.11718 -37.51402 -37.03381 -36.36716 -34.96617 -33.24249 -31.39631 -30.92608 -30.02392 -26.82652 -25.67341 -23.55388 -23.01026 -21.96704 -21.44415 -19.82717 -19.28291 -19.14835 -18.48941 -17.74031 -17.46119 -17.10279 -16.74560 -16.52697 -16.20951 -15.74604 -15.30704 -15.12364 -14.89403 -14.47553 -13.98152 -13.91291 -13.78684 -13.58020 -13.38898 -13.21968 -13.18031 -13.12541 -12.96736 -12.83498 -12.64152 -12.39705 -12.09110 -11.91279 -11.79359 -11.66426 -11.36500 -11.16610 -10.89591 -10.47236 -9.94734 -9.45683 -8.85926 -8.51609 -6.19618 -0.91868 0.77127 1.15143 1.27552 1.40052 1.51003 1.58285 1.62185 2.14507 2.19411 2.65114 2.67529 3.04113 3.27105 3.58912 3.65565 3.75168 3.82662 3.99155 4.04685 4.37546 4.47223 4.48897 4.64832 4.72522 4.84381 4.99726 5.04616 5.11993 5.13755 5.20764 5.32836 5.54683 5.67682 5.89311 6.09915 6.16624 6.33213 6.38196 6.66489 6.77583 6.92533 7.02136 7.47830 8.22409 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.002383 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.865859 B =11746.212299 C =12337.257800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.046 3.954 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.080 0.920 9 C 0.078 3.922 10 C -0.230 4.230 11 C -0.090 4.090 12 C 0.007 3.993 13 N -0.629 5.629 14 C 0.567 3.433 15 O -0.533 6.533 16 N -0.614 5.614 17 C 0.087 3.913 18 H 0.079 0.921 19 C -0.105 4.105 20 C -0.560 4.560 21 S 2.401 3.599 22 O -0.980 6.980 23 O -0.977 6.977 24 C -0.574 4.574 25 C -0.093 4.093 26 C -0.188 4.188 27 H 0.291 0.709 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.422 0.578 31 H 0.417 0.583 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.100 0.900 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -12.386 11.173 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.172 4.172 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.075 3.925 10 C -0.250 4.250 11 C -0.111 4.111 12 C -0.088 4.088 13 N -0.269 5.269 14 C 0.254 3.746 15 O -0.339 6.339 16 N -0.361 5.361 17 C -0.026 4.026 18 H 0.097 0.903 19 C -0.144 4.144 20 C -0.693 4.693 21 S 2.588 3.412 22 O -0.977 6.977 23 O -0.974 6.974 24 C -0.705 4.705 25 C -0.114 4.114 26 C -0.209 4.209 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.261 0.739 31 H 0.278 0.722 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.118 0.882 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.558 -12.534 11.661 17.129 hybrid contribution 1.143 1.368 -0.541 1.863 sum 0.584 -11.166 11.121 15.769 Atomic orbital electron populations 1.69957 1.09437 1.31168 1.32370 1.26742 0.95045 1.04641 0.90815 0.85377 0.79703 0.76331 0.79502 1.18589 1.19271 1.18037 1.19765 1.04450 0.94721 1.33717 0.90189 1.17921 0.91152 0.93033 0.90346 1.20708 1.06500 0.92163 1.05628 1.20325 0.94935 0.98333 0.97472 1.17018 1.01590 0.85539 1.04604 1.41408 1.63794 1.14530 1.07137 1.20627 0.88519 0.81678 0.83812 1.84768 1.39665 1.43703 1.65732 1.72634 1.28408 1.23281 1.11754 1.21920 0.90974 0.99746 0.89943 0.90338 1.21964 1.02352 0.99012 0.91036 1.30281 1.19076 1.14877 1.05093 1.08482 0.79840 0.74884 0.77988 1.93566 1.87274 1.52198 1.64630 1.93557 1.62526 1.55246 1.86068 1.30704 1.03840 1.12888 1.23060 1.20433 0.99059 0.91980 0.99907 1.20677 1.02686 0.96937 1.00554 0.89832 0.87789 0.85499 0.73853 0.72160 0.88367 0.87897 0.82374 0.81704 0.85489 0.83445 0.88187 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.51 11.51 21.82 0.25 -40.26 16 2 C 0.05 2.21 4.86 85.23 0.41 2.63 16 3 Si 0.97 36.14 29.65 68.60 2.03 38.17 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.50 -25.34 8.96 23.38 0.21 -25.13 16 8 H 0.08 3.91 8.00 -2.91 -0.02 3.89 16 9 C 0.08 3.93 5.59 -21.27 -0.12 3.81 16 10 C -0.23 -10.13 9.74 22.48 0.22 -9.91 16 11 C -0.09 -3.38 9.90 22.14 0.22 -3.16 16 12 C 0.01 0.25 6.24 38.60 0.24 0.49 16 13 N -0.63 -18.62 5.41 -301.17 -1.63 -20.25 16 14 C 0.57 15.67 8.22 179.57 1.48 17.15 16 15 O -0.53 -14.26 9.21 -83.88 -0.77 -15.03 16 16 N -0.61 -15.28 10.29 -440.44 -4.53 -19.82 16 17 C 0.09 1.70 3.24 45.99 0.15 1.84 16 18 H 0.08 1.50 6.78 -2.39 -0.02 1.48 16 19 C -0.10 -1.30 6.03 31.28 0.19 -1.11 16 20 C -0.56 -5.19 7.26 72.37 0.53 -4.67 16 21 S 2.40 42.41 6.10 -56.49 -0.34 42.06 16 22 O -0.98 -25.04 18.14 -127.47 -2.31 -27.35 16 23 O -0.98 -23.87 18.15 -127.47 -2.31 -26.19 16 24 C -0.57 -10.78 6.96 72.68 0.51 -10.27 16 25 C -0.09 -4.01 8.51 22.14 0.19 -3.82 16 26 C -0.19 -9.32 8.72 22.48 0.20 -9.12 16 27 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 28 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 29 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 30 H 0.42 10.85 8.93 -92.71 -0.83 10.02 16 31 H 0.42 7.67 9.06 -74.06 -0.67 7.00 16 32 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.16 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.17 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.10 4.24 6.62 -2.91 -0.02 4.22 16 39 H 0.09 4.71 6.34 -2.91 -0.02 4.69 16 Total: -1.00 -69.75 343.00 -5.59 -75.34 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.39 Total: 34.57 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.41 Total: -41.26 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -5.91 Total: -80.32 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -5.40 Total: -68.56 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Atomic # 16 Polarization: 42.41 SS G_CDS: -0.34 Total: 42.06 kcal Total: -69.75 -5.59 -75.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.589 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds