Wall clock time and date at job start Tue Mar 31 2020 14:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47104 * 59.99462 * 3 2 1 6 6 H 1.48507 * 109.46759 * 299.99691 * 3 2 1 7 7 C 1.39884 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00273 * 154.27823 * 7 2 1 9 9 C 1.41142 * 119.99819 * 334.27336 * 7 2 1 10 10 C 1.40883 * 120.15750 * 331.13039 * 9 7 2 11 11 C 1.36358 * 119.82641 * 179.76187 * 10 9 7 12 12 C 1.39526 * 120.16675 * 0.48567 * 11 10 9 13 13 N 1.39108 * 119.83643 * 179.74182 * 12 11 10 14 14 C 1.37551 * 119.99788 * 211.12063 * 13 12 11 15 15 O 1.35105 * 120.00107 * 5.03816 * 14 13 12 16 16 N 1.30085 * 119.99959 * 185.03833 * 14 13 12 17 17 C 1.46497 * 120.00178 * 184.99612 * 16 14 13 18 18 H 1.09007 * 110.00826 * 3.88024 * 17 16 14 19 19 C 1.53874 * 110.02787 * 125.26008 * 17 16 14 20 20 C 1.54167 * 108.70373 * 166.47370 * 19 17 16 21 21 S 1.82911 * 105.08448 * 332.09100 * 20 19 17 22 22 O 1.42108 * 109.35579 * 115.52578 * 21 20 19 23 23 O 1.42106 * 109.35447 * 248.58970 * 21 20 19 24 24 C 1.55045 * 110.02771 * 242.45347 * 17 16 14 25 25 C 1.39514 * 120.32328 * 359.76428 * 12 11 10 26 26 C 1.36354 * 120.16958 * 0.02562 * 25 12 11 27 27 H 0.97006 * 119.99808 * 174.20852 * 1 2 3 28 28 H 1.07998 * 120.08803 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.91877 * 180.25120 * 11 10 9 30 30 H 0.96998 * 120.00479 * 31.11853 * 13 12 11 31 31 H 0.96696 * 114.00326 * 94.50721 * 15 14 13 32 32 H 1.08999 * 109.64858 * 286.32597 * 19 17 16 33 33 H 1.08997 * 109.64350 * 46.62023 * 19 17 16 34 34 H 1.09003 * 110.31741 * 90.99643 * 20 19 17 35 35 H 1.09000 * 110.31524 * 213.19090 * 20 19 17 36 36 H 1.08997 * 110.79221 * 316.54209 * 24 17 16 37 37 H 1.08999 * 110.79150 * 80.00472 * 24 17 16 38 38 H 1.08003 * 119.91653 * 179.97438 * 25 12 11 39 39 H 1.07999 * 120.08693 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8841 2.3965 1.2124 6 1 1.8841 2.3964 -1.2126 7 6 2.0083 -1.2114 0.0005 8 1 3.0081 -1.2579 -0.4054 9 6 1.4076 -2.3729 0.5317 10 6 0.4493 -2.2675 1.5590 11 6 -0.1304 -3.3938 2.0638 12 6 0.2307 -4.6488 1.5725 13 7 -0.3612 -5.7935 2.0962 14 6 0.3453 -6.9728 2.1436 15 8 1.6454 -6.9966 1.7769 16 7 -0.2383 -8.0651 2.5416 17 6 0.5398 -9.2966 2.6969 18 1 1.5941 -9.0985 2.5039 19 6 0.3606 -9.8575 4.1186 20 6 0.8976 -11.3022 4.1514 21 16 0.6904 -11.9259 2.4445 22 8 1.9681 -12.1899 1.8812 23 8 -0.3114 -12.9337 2.4296 24 6 0.0154 -10.3825 1.7223 25 6 1.1826 -4.7611 0.5588 26 6 1.7677 -3.6435 0.0413 27 1 -0.4850 -0.8358 -0.0848 28 1 0.1721 -1.2971 1.9434 29 1 -0.8681 -3.3145 2.8486 30 1 -1.2721 -5.7603 2.4280 31 1 2.2638 -6.8960 2.5135 32 1 0.9164 -9.2437 4.8274 33 1 -0.6967 -9.8533 4.3835 34 1 1.9510 -11.3082 4.4314 35 1 0.3164 -11.9062 4.8482 36 1 -1.0744 -10.4028 1.7158 37 1 0.4064 -10.2221 0.7176 38 1 1.4575 -5.7359 0.1836 39 1 2.5048 -3.7321 -0.7431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330371673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:53 Heat of formation + Delta-G solvation = -67.177581 kcal Electronic energy + Delta-G solvation = -24260.270916 eV Core-core repulsion = 20488.331399 eV Total energy + Delta-G solvation = -3771.939518 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.74715 -37.98269 -37.25581 -36.66429 -36.17727 -35.14103 -33.51126 -32.15068 -29.99466 -29.66954 -28.44356 -25.50897 -24.54232 -22.48589 -21.51680 -20.77506 -20.39298 -19.06861 -18.13814 -18.08820 -17.42222 -16.90647 -16.36194 -15.99368 -15.68879 -15.24824 -14.70848 -14.64012 -14.24553 -14.11612 -13.79261 -13.13911 -12.95230 -12.74536 -12.52263 -12.45533 -12.39258 -12.34981 -12.23890 -11.98120 -11.63968 -11.50858 -11.21917 -11.01358 -10.96178 -10.87179 -10.59101 -10.51186 -9.80506 -9.72230 -9.46565 -9.15361 -8.63440 -7.98009 -7.36951 -7.09596 -4.50974 -0.19835 1.98825 2.31367 2.66439 2.69574 3.08666 3.13025 3.26179 3.27485 3.38134 3.75269 3.91800 4.07247 4.34935 4.38975 4.44697 4.52183 4.58051 4.72313 5.13222 5.30189 5.30917 5.38928 5.55032 5.70356 5.73080 5.88759 6.06816 6.49800 6.64969 6.74908 6.91602 7.13753 7.20073 7.33218 7.54493 7.63985 7.67144 7.96999 8.03309 8.09082 8.48219 8.63424 8.73660 9.92236 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.041695 B = 0.002180 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.379667 B =12842.862521 C =13085.275280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.038 3.962 3 Si 1.069 2.931 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.078 0.922 9 C 0.091 3.909 10 C -0.201 4.201 11 C -0.092 4.092 12 C -0.018 4.018 13 N -0.622 5.622 14 C 0.573 3.427 15 O -0.523 6.523 16 N -0.622 5.622 17 C 0.104 3.896 18 H 0.072 0.928 19 C -0.105 4.105 20 C -0.591 4.591 21 S 2.388 3.612 22 O -0.940 6.940 23 O -0.942 6.942 24 C -0.574 4.574 25 C -0.082 4.082 26 C -0.213 4.213 27 H 0.299 0.701 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.415 0.585 31 H 0.400 0.600 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -13.537 8.086 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.184 4.184 3 Si 0.892 3.108 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.096 0.904 9 C 0.088 3.912 10 C -0.221 4.221 11 C -0.113 4.113 12 C -0.112 4.112 13 N -0.259 5.259 14 C 0.261 3.739 15 O -0.327 6.327 16 N -0.371 5.371 17 C -0.010 4.010 18 H 0.090 0.910 19 C -0.144 4.144 20 C -0.721 4.721 21 S 2.571 3.429 22 O -0.937 6.937 23 O -0.939 6.939 24 C -0.705 4.705 25 C -0.102 4.102 26 C -0.233 4.233 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.252 0.748 31 H 0.260 0.740 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.127 0.873 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.122 -13.126 7.317 15.028 hybrid contribution 0.647 -0.804 0.644 1.216 sum 0.769 -13.929 7.961 16.062 Atomic orbital electron populations 1.70439 1.08196 1.34264 1.28755 1.27042 0.95653 1.04394 0.91288 0.83588 0.75547 0.73435 0.78182 1.20080 1.19891 1.20328 1.20576 1.03321 0.94155 1.36463 0.90418 1.17739 0.90679 0.92775 0.90036 1.20732 1.04099 0.96754 1.00546 1.20102 1.00441 0.91477 0.99304 1.17093 1.06413 0.84292 1.03365 1.41540 1.16233 1.04827 1.63271 1.20547 0.80150 0.87040 0.86176 1.84809 1.15109 1.93944 1.38794 1.72654 1.32882 0.97640 1.33943 1.21614 0.96993 0.90802 0.91589 0.90967 1.21908 1.03803 0.91440 0.97284 1.30458 1.10884 1.07322 1.23429 1.09026 0.75928 0.78168 0.79774 1.93622 1.40019 1.84114 1.75921 1.93608 1.59830 1.54518 1.85950 1.30753 1.13185 1.16912 1.09622 1.20461 0.97004 0.98019 0.94758 1.20661 1.06461 0.92372 1.03776 0.88765 0.87436 0.88741 0.74770 0.74042 0.89497 0.88909 0.84666 0.84382 0.83855 0.84811 0.87287 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 12.44 55.54 0.69 -19.23 16 2 C 0.04 0.92 4.89 -17.34 -0.08 0.83 16 3 Si 1.07 20.41 30.00 -169.99 -5.10 15.31 16 4 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.52 -12.85 8.95 -37.86 -0.34 -13.19 16 8 H 0.08 1.90 7.96 -52.49 -0.42 1.48 16 9 C 0.09 2.22 5.21 -106.80 -0.56 1.66 16 10 C -0.20 -4.65 7.96 -39.26 -0.31 -4.96 16 11 C -0.09 -1.86 9.89 -39.78 -0.39 -2.25 16 12 C -0.02 -0.35 6.36 -83.60 -0.53 -0.88 16 13 N -0.62 -9.70 5.43 -11.67 -0.06 -9.76 16 14 C 0.57 8.20 8.29 -88.38 -0.73 7.47 16 15 O -0.52 -6.98 8.73 -17.02 -0.15 -7.13 16 16 N -0.62 -8.14 10.29 -54.45 -0.56 -8.70 16 17 C 0.10 1.07 3.22 -66.40 -0.21 0.85 16 18 H 0.07 0.69 6.80 -51.93 -0.35 0.34 16 19 C -0.11 -0.81 6.03 -25.67 -0.15 -0.97 16 20 C -0.59 -3.70 7.26 37.77 0.27 -3.42 16 21 S 2.39 21.81 6.10 -107.50 -0.66 21.16 16 22 O -0.94 -11.86 18.15 -57.73 -1.05 -12.91 16 23 O -0.94 -11.68 18.15 -57.73 -1.05 -12.73 16 24 C -0.57 -5.46 6.96 38.24 0.27 -5.20 16 25 C -0.08 -1.67 8.53 -39.78 -0.34 -2.00 16 26 C -0.21 -4.80 9.74 -39.26 -0.38 -5.18 16 27 H 0.30 7.68 6.88 -40.82 -0.28 7.40 16 28 H 0.11 2.58 6.77 -52.49 -0.36 2.22 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.41 5.80 8.91 -40.82 -0.36 5.44 16 31 H 0.40 3.70 9.05 45.56 0.41 4.12 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.11 2.11 6.09 -52.48 -0.32 1.79 16 39 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -31.67 341.33 -10.15 -41.82 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -3.86 Total: 14.28 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -3.50 Total: -27.25 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.07 Total: -37.68 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -2.24 Total: -32.77 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.10 Total: 15.31 kcal Atomic # 16 Polarization: 21.81 SS G_CDS: -0.66 Total: 21.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.67 -10.15 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.361 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds