Wall clock time and date at job start Tue Mar 31 2020 14:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47104 * 59.99462 * 3 2 1 6 6 H 1.48507 * 109.46759 * 299.99691 * 3 2 1 7 7 C 1.39884 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00273 * 154.27823 * 7 2 1 9 9 C 1.41142 * 119.99819 * 334.27336 * 7 2 1 10 10 C 1.40883 * 120.15750 * 331.13039 * 9 7 2 11 11 C 1.36358 * 119.82641 * 179.76187 * 10 9 7 12 12 C 1.39526 * 120.16675 * 0.48567 * 11 10 9 13 13 N 1.39108 * 119.83643 * 179.74182 * 12 11 10 14 14 C 1.37551 * 119.99788 * 211.12063 * 13 12 11 15 15 O 1.35105 * 120.00107 * 5.03816 * 14 13 12 16 16 N 1.30085 * 119.99959 * 185.03833 * 14 13 12 17 17 C 1.46497 * 120.00178 * 184.99612 * 16 14 13 18 18 H 1.09007 * 110.00826 * 3.88024 * 17 16 14 19 19 C 1.53874 * 110.02787 * 125.26008 * 17 16 14 20 20 C 1.54167 * 108.70373 * 166.47370 * 19 17 16 21 21 S 1.82911 * 105.08448 * 332.09100 * 20 19 17 22 22 O 1.42108 * 109.35579 * 115.52578 * 21 20 19 23 23 O 1.42106 * 109.35447 * 248.58970 * 21 20 19 24 24 C 1.55045 * 110.02771 * 242.45347 * 17 16 14 25 25 C 1.39514 * 120.32328 * 359.76428 * 12 11 10 26 26 C 1.36354 * 120.16958 * 0.02562 * 25 12 11 27 27 H 0.97006 * 119.99808 * 174.20852 * 1 2 3 28 28 H 1.07998 * 120.08803 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.91877 * 180.25120 * 11 10 9 30 30 H 0.96998 * 120.00479 * 31.11853 * 13 12 11 31 31 H 0.96696 * 114.00326 * 94.50721 * 15 14 13 32 32 H 1.08999 * 109.64858 * 286.32597 * 19 17 16 33 33 H 1.08997 * 109.64350 * 46.62023 * 19 17 16 34 34 H 1.09003 * 110.31741 * 90.99643 * 20 19 17 35 35 H 1.09000 * 110.31524 * 213.19090 * 20 19 17 36 36 H 1.08997 * 110.79221 * 316.54209 * 24 17 16 37 37 H 1.08999 * 110.79150 * 80.00472 * 24 17 16 38 38 H 1.08003 * 119.91653 * 179.97438 * 25 12 11 39 39 H 1.07999 * 120.08693 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8841 2.3965 1.2124 6 1 1.8841 2.3964 -1.2126 7 6 2.0083 -1.2114 0.0005 8 1 3.0081 -1.2579 -0.4054 9 6 1.4076 -2.3729 0.5317 10 6 0.4493 -2.2675 1.5590 11 6 -0.1304 -3.3938 2.0638 12 6 0.2307 -4.6488 1.5725 13 7 -0.3612 -5.7935 2.0962 14 6 0.3453 -6.9728 2.1436 15 8 1.6454 -6.9966 1.7769 16 7 -0.2383 -8.0651 2.5416 17 6 0.5398 -9.2966 2.6969 18 1 1.5941 -9.0985 2.5039 19 6 0.3606 -9.8575 4.1186 20 6 0.8976 -11.3022 4.1514 21 16 0.6904 -11.9259 2.4445 22 8 1.9681 -12.1899 1.8812 23 8 -0.3114 -12.9337 2.4296 24 6 0.0154 -10.3825 1.7223 25 6 1.1826 -4.7611 0.5588 26 6 1.7677 -3.6435 0.0413 27 1 -0.4850 -0.8358 -0.0848 28 1 0.1721 -1.2971 1.9434 29 1 -0.8681 -3.3145 2.8486 30 1 -1.2721 -5.7603 2.4280 31 1 2.2638 -6.8960 2.5135 32 1 0.9164 -9.2437 4.8274 33 1 -0.6967 -9.8533 4.3835 34 1 1.9510 -11.3082 4.4314 35 1 0.3164 -11.9062 4.8482 36 1 -1.0744 -10.4028 1.7158 37 1 0.4064 -10.2221 0.7176 38 1 1.4575 -5.7359 0.1836 39 1 2.5048 -3.7321 -0.7431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330371673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:52 Heat of formation + Delta-G solvation = -93.523181 kcal Electronic energy + Delta-G solvation = -24261.413347 eV Core-core repulsion = 20488.331399 eV Total energy + Delta-G solvation = -3773.081949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97811 -39.45761 -38.12923 -37.57149 -37.05274 -36.55359 -35.00503 -33.23777 -31.63546 -30.73031 -29.86547 -26.77884 -25.71097 -23.77423 -22.97333 -22.17778 -21.46207 -19.84353 -19.83565 -19.26328 -18.46883 -17.81114 -17.49860 -16.99975 -16.59639 -16.45964 -16.21585 -15.70709 -15.43819 -15.32511 -14.94720 -14.53647 -14.25881 -14.02686 -13.84438 -13.63582 -13.30743 -13.29672 -13.17984 -13.11789 -13.05345 -12.79221 -12.57015 -12.25717 -12.05323 -11.95738 -11.81371 -11.48948 -11.42395 -11.25101 -10.83706 -10.49587 -10.04669 -9.69291 -9.17714 -8.63519 -6.33102 -0.93535 0.65720 0.95062 1.26736 1.53129 1.58298 1.66424 1.80805 2.04448 2.34941 2.65311 2.68687 3.02351 3.19415 3.52450 3.56583 3.63710 3.79593 3.96168 4.02641 4.23627 4.33440 4.40840 4.58389 4.69849 4.82576 4.84856 4.97148 5.01466 5.09333 5.12305 5.40864 5.45390 5.64522 5.80660 5.83806 6.06028 6.20725 6.27671 6.38482 6.66213 6.79938 6.94635 7.40683 8.08178 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.041695 B = 0.002180 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.379667 B =12842.862521 C =13085.275280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.005 3.995 3 Si 1.117 2.883 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.062 3.938 10 C -0.212 4.212 11 C -0.097 4.097 12 C 0.022 3.978 13 N -0.628 5.628 14 C 0.567 3.433 15 O -0.532 6.532 16 N -0.613 5.613 17 C 0.089 3.911 18 H 0.082 0.918 19 C -0.104 4.104 20 C -0.561 4.561 21 S 2.401 3.599 22 O -0.978 6.978 23 O -0.978 6.978 24 C -0.576 4.576 25 C -0.085 4.085 26 C -0.223 4.223 27 H 0.283 0.717 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.424 0.576 31 H 0.418 0.582 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -15.131 10.201 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.211 4.211 3 Si 0.935 3.065 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.087 0.913 9 C 0.059 3.941 10 C -0.232 4.232 11 C -0.118 4.118 12 C -0.072 4.072 13 N -0.266 5.266 14 C 0.254 3.746 15 O -0.338 6.338 16 N -0.360 5.360 17 C -0.025 4.025 18 H 0.100 0.900 19 C -0.143 4.143 20 C -0.694 4.694 21 S 2.588 3.412 22 O -0.975 6.975 23 O -0.975 6.975 24 C -0.707 4.707 25 C -0.106 4.106 26 C -0.243 4.243 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.263 0.737 31 H 0.280 0.720 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.164 0.836 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.166 -14.811 9.426 17.557 hybrid contribution 0.575 -0.703 0.128 0.917 sum 0.741 -15.514 9.553 18.235 Atomic orbital electron populations 1.70555 1.08817 1.33076 1.31959 1.28292 0.95689 1.07244 0.89854 0.82992 0.74887 0.69973 0.78622 1.18997 1.19089 1.19494 1.20684 1.03455 0.95521 1.39087 0.91348 1.18005 0.91749 0.93420 0.90923 1.20691 1.04589 0.97133 1.00783 1.20334 1.00697 0.91001 0.99719 1.17078 1.03922 0.85227 1.01012 1.41376 1.16820 1.04310 1.64132 1.20508 0.80513 0.86808 0.86817 1.84765 1.15105 1.93820 1.40085 1.72607 1.33861 0.98047 1.31520 1.21943 0.97293 0.89665 0.93558 0.90038 1.21919 1.04606 0.92166 0.95562 1.30291 1.12965 1.06199 1.19947 1.08496 0.74331 0.77415 0.80975 1.93571 1.41366 1.84774 1.77813 1.93560 1.60705 1.56194 1.87040 1.30729 1.13421 1.16957 1.09553 1.20589 0.97209 0.97843 0.94938 1.20793 1.06791 0.92677 1.04032 0.90513 0.89119 0.85924 0.73663 0.71990 0.87827 0.88480 0.82315 0.81842 0.83575 0.85249 0.85911 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.86 12.44 21.82 0.27 -42.59 16 2 C 0.01 0.25 4.89 85.23 0.42 0.67 16 3 Si 1.12 41.99 30.00 68.60 2.06 44.05 16 4 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.56 -29.05 8.95 23.38 0.21 -28.84 16 8 H 0.07 3.52 7.96 -2.91 -0.02 3.50 16 9 C 0.06 3.12 5.21 -21.27 -0.11 3.01 16 10 C -0.21 -9.98 7.96 22.48 0.18 -9.80 16 11 C -0.10 -3.79 9.89 22.14 0.22 -3.57 16 12 C 0.02 0.80 6.36 38.61 0.25 1.05 16 13 N -0.63 -17.80 5.43 -301.18 -1.63 -19.43 16 14 C 0.57 14.51 8.29 179.56 1.49 16.00 16 15 O -0.53 -12.68 8.73 -83.80 -0.73 -13.42 16 16 N -0.61 -14.07 10.29 -440.45 -4.53 -18.60 16 17 C 0.09 1.53 3.22 45.99 0.15 1.68 16 18 H 0.08 1.29 6.80 -2.38 -0.02 1.28 16 19 C -0.10 -1.15 6.03 31.28 0.19 -0.96 16 20 C -0.56 -4.57 7.26 72.38 0.53 -4.04 16 21 S 2.40 39.32 6.10 -56.49 -0.34 38.97 16 22 O -0.98 -23.53 18.15 -127.47 -2.31 -25.85 16 23 O -0.98 -23.04 18.15 -127.47 -2.31 -25.36 16 24 C -0.58 -9.83 6.96 72.68 0.51 -9.32 16 25 C -0.09 -3.37 8.53 22.14 0.19 -3.18 16 26 C -0.22 -10.21 9.74 22.48 0.22 -9.99 16 27 H 0.28 15.31 6.88 -92.70 -0.64 14.67 16 28 H 0.09 4.52 6.77 -2.91 -0.02 4.51 16 29 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 30 H 0.42 10.58 8.91 -92.71 -0.83 9.76 16 31 H 0.42 6.42 9.05 -74.06 -0.67 5.75 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.16 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.12 4.52 6.09 -2.91 -0.02 4.50 16 39 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -70.42 341.33 -5.37 -75.79 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.25 Total: 33.73 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 4.42 Total: -47.30 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -5.89 Total: -80.62 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -5.36 Total: -64.62 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.06 Total: 44.05 kcal Atomic # 16 Polarization: 39.32 SS G_CDS: -0.34 Total: 38.97 kcal Total: -70.42 -5.37 -75.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.736 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds