Wall clock time and date at job start Tue Mar 31 2020 14:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48502 * 109.46927 * 270.00299 * 3 2 1 5 5 H 1.48497 * 109.47131 * 29.99452 * 3 2 1 6 6 H 1.48496 * 109.47406 * 150.00150 * 3 2 1 7 7 C 1.39890 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99896 * 189.77198 * 7 2 1 9 9 C 1.41157 * 120.00417 * 9.77001 * 7 2 1 10 10 C 1.40869 * 120.16369 * 29.87249 * 9 7 2 11 11 C 1.36372 * 119.83076 * 179.70501 * 10 9 7 12 12 C 1.39476 * 120.16726 * 0.27218 * 11 10 9 13 13 N 1.39244 * 119.83188 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99920 * 36.54682 * 13 12 11 15 15 O 1.21574 * 119.99941 * 355.36000 * 14 13 12 16 16 N 1.34783 * 119.99798 * 175.36124 * 14 13 12 17 17 C 1.46382 * 119.69961 * 4.15301 * 16 14 13 18 18 C 1.53654 * 109.25109 * 115.72365 * 17 16 14 19 19 S 1.81664 * 108.90780 * 58.41980 * 18 17 16 20 20 O 1.42091 * 108.65402 * 189.98038 * 19 18 17 21 21 O 1.42099 * 108.72175 * 58.70847 * 19 18 17 22 22 C 1.81665 * 101.38583 * 304.33385 * 19 18 17 23 23 C 1.46382 * 119.69489 * 184.42803 * 16 14 13 24 24 C 1.39480 * 120.33397 * 0.02562 * 12 11 10 25 25 C 1.36373 * 120.17061 * 359.97438 * 24 12 11 26 26 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.07952 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.91288 * 180.29637 * 11 10 9 29 29 H 0.97008 * 119.99879 * 216.54488 * 13 12 11 30 30 H 1.09003 * 109.46242 * 235.74100 * 17 16 14 31 31 H 1.08998 * 109.46929 * 355.71167 * 17 16 14 32 32 H 1.09000 * 109.66818 * 298.54136 * 18 17 16 33 33 H 1.09004 * 109.49280 * 178.20054 * 18 17 16 34 34 H 1.08992 * 109.56091 * 295.71810 * 22 19 18 35 35 H 1.09004 * 109.55929 * 175.39953 * 22 19 18 36 36 H 1.08998 * 109.47065 * 4.28364 * 23 16 14 37 37 H 1.09003 * 109.46263 * 124.27304 * 23 16 14 38 38 H 1.08005 * 119.91475 * 180.02562 * 24 12 11 39 39 H 1.08001 * 120.08737 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0764 -1.2183 0.1593 9 6 1.3178 -2.4252 -0.2063 10 6 0.1527 -2.4508 -0.9978 11 6 -0.5056 -3.6282 -1.1981 12 6 -0.0312 -4.8041 -0.6171 13 7 -0.7092 -6.0023 -0.8258 14 6 -1.2781 -6.2552 -2.0211 15 8 -1.2729 -5.4040 -2.8892 16 7 -1.8530 -7.4519 -2.2541 17 6 -1.9366 -8.4385 -1.1760 18 6 -3.4133 -8.6939 -0.8365 19 16 -4.2676 -9.2796 -2.3289 20 8 -5.6659 -9.2924 -2.0766 21 8 -3.6320 -10.4670 -2.7819 22 6 -3.9008 -7.9409 -3.5008 23 6 -2.3825 -7.7552 -3.5847 24 6 1.1181 -4.7856 0.1729 25 6 1.7871 -3.6159 0.3823 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2158 -1.5409 -1.4483 28 1 -1.3962 -3.6502 -1.8086 29 1 -0.7719 -6.6550 -0.1109 30 1 -1.4692 -9.3690 -1.4981 31 1 -1.4195 -8.0585 -0.2949 32 1 -3.8755 -7.7693 -0.4906 33 1 -3.4812 -9.4518 -0.0559 34 1 -4.3629 -7.0163 -3.1550 35 1 -4.2915 -8.2000 -4.4849 36 1 -2.1541 -6.9330 -4.2627 37 1 -1.9247 -8.6715 -3.9575 38 1 1.4797 -5.7003 0.6192 39 1 2.6772 -3.6032 0.9939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330670618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:09 Heat of formation + Delta-G solvation = -53.356716 kcal Electronic energy + Delta-G solvation = -24959.552960 eV Core-core repulsion = 21188.212760 eV Total energy + Delta-G solvation = -3771.340200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56385 -37.97303 -37.34317 -36.42339 -36.33590 -34.73672 -33.21023 -32.20323 -30.67187 -29.52603 -28.79488 -25.28982 -24.56408 -23.57474 -21.40362 -21.08694 -19.78936 -19.06873 -18.51597 -17.34140 -16.89721 -16.69801 -16.51702 -16.11732 -15.83955 -15.41185 -15.13978 -14.37211 -14.27958 -13.99008 -13.63860 -13.47558 -13.03770 -12.83686 -12.69241 -12.57364 -12.47367 -12.33307 -12.26998 -12.11542 -11.79177 -11.45155 -11.18303 -11.13391 -11.11483 -10.73989 -10.59146 -10.05167 -9.78959 -9.53313 -9.25587 -9.09259 -8.97048 -7.57272 -7.00253 -6.71203 -4.35803 -0.36961 2.26746 2.41783 2.66290 3.00940 3.06502 3.09477 3.10863 3.26816 3.37521 3.68029 3.87970 3.93227 3.94836 4.34928 4.38857 4.58905 4.63206 4.67297 4.88701 5.10475 5.24318 5.42407 5.51959 5.64314 6.07280 6.12103 6.29654 6.56256 6.70918 6.99834 7.02982 7.17789 7.24382 7.57699 7.69418 7.91599 8.03192 8.19374 8.28307 8.60609 8.77614 8.86856 8.97189 10.21613 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.002568 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.890829 B =10900.322415 C =11174.559584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.105 3.895 10 C -0.147 4.147 11 C -0.088 4.088 12 C 0.008 3.992 13 N -0.662 5.662 14 C 0.699 3.301 15 O -0.564 6.564 16 N -0.648 5.648 17 C 0.122 3.878 18 C -0.627 4.627 19 S 2.421 3.579 20 O -0.942 6.942 21 O -0.936 6.936 22 C -0.620 4.620 23 C 0.139 3.861 24 C -0.107 4.107 25 C -0.210 4.210 26 H 0.280 0.720 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.390 0.610 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -15.278 -2.177 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.103 3.897 10 C -0.167 4.167 11 C -0.108 4.108 12 C -0.084 4.084 13 N -0.310 5.310 14 C 0.401 3.599 15 O -0.439 6.439 16 N -0.387 5.387 17 C -0.004 4.004 18 C -0.757 4.757 19 S 2.603 3.397 20 O -0.939 6.939 21 O -0.933 6.933 22 C -0.751 4.751 23 C 0.014 3.986 24 C -0.127 4.127 25 C -0.230 4.230 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.227 0.773 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.020 -15.255 -2.936 17.048 hybrid contribution 0.524 1.132 0.713 1.437 sum -6.496 -14.123 -2.223 15.704 Atomic orbital electron populations 1.69808 1.07399 1.29058 1.36410 1.25899 0.94864 1.01248 0.92477 0.86249 0.80274 0.80540 0.79242 1.19357 1.20335 1.18705 1.19536 0.95706 0.90487 1.43280 0.90480 1.17695 0.91739 0.92130 0.88157 1.21053 0.98485 0.96393 1.00811 1.20552 0.99473 0.91316 0.99440 1.17010 0.96987 0.83631 1.10762 1.42312 1.56510 1.20425 1.11798 1.15928 0.79047 0.81558 0.83380 1.90932 1.63392 1.44374 1.45224 1.47379 1.64496 1.15385 1.11479 1.21309 0.92395 0.94435 0.92215 1.30718 1.09399 1.13992 1.21612 1.07931 0.75690 0.77292 0.78831 1.93604 1.28844 1.86978 1.84466 1.93595 1.77736 1.42126 1.79823 1.30599 1.06557 1.19992 1.17942 1.21018 0.87649 1.04970 0.84958 1.20017 0.94157 0.97212 1.01320 1.20595 1.02861 0.93277 1.06290 0.90939 0.86041 0.87579 0.77317 0.88459 0.87942 0.84243 0.83584 0.84299 0.83645 0.86126 0.89069 0.89221 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.85 55.54 0.60 -20.01 16 2 C 0.07 1.79 5.26 -17.34 -0.09 1.70 16 3 Si 0.91 18.61 29.57 -169.99 -5.03 13.58 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.01 9.04 -37.86 -0.34 -12.35 16 8 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 9 C 0.11 2.76 5.54 -106.80 -0.59 2.17 16 10 C -0.15 -3.85 8.59 -39.26 -0.34 -4.19 16 11 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 12 C 0.01 0.18 6.28 -83.57 -0.53 -0.35 16 13 N -0.66 -10.78 5.20 -14.10 -0.07 -10.85 16 14 C 0.70 11.29 8.09 -86.91 -0.70 10.59 16 15 O -0.56 -11.51 13.15 5.30 0.07 -11.44 16 16 N -0.65 -7.10 2.79 -179.09 -0.50 -7.60 16 17 C 0.12 0.90 6.23 -3.77 -0.02 0.88 16 18 C -0.63 -3.82 6.57 37.50 0.25 -3.57 16 19 S 2.42 19.23 5.29 -107.50 -0.57 18.66 16 20 O -0.94 -10.90 18.10 -57.82 -1.05 -11.95 16 21 O -0.94 -9.84 18.02 -57.82 -1.04 -10.89 16 22 C -0.62 -4.48 6.55 37.25 0.24 -4.23 16 23 C 0.14 1.29 6.18 -4.01 -0.02 1.26 16 24 C -0.11 -2.23 9.90 -39.79 -0.39 -2.63 16 25 C -0.21 -4.93 9.74 -39.26 -0.38 -5.31 16 26 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 27 H 0.12 3.32 6.26 -52.48 -0.33 2.99 16 28 H 0.11 2.56 6.30 -52.49 -0.33 2.23 16 29 H 0.39 4.79 6.17 -40.82 -0.25 4.53 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.66 5.41 -51.93 -0.28 0.38 16 32 H 0.14 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.15 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.12 1.33 6.90 -51.93 -0.36 0.97 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -35.24 333.06 -10.31 -45.55 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.48 Total: 8.41 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.27 Total: -18.49 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.03 Total: -38.46 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -2.02 Total: -34.27 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 19.23 SS G_CDS: -0.57 Total: 18.66 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.24 -10.31 -45.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330670618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.804 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds