Wall clock time and date at job start Tue Mar 31 2020 14:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48502 * 109.46927 * 270.00299 * 3 2 1 5 5 H 1.48497 * 109.47131 * 29.99452 * 3 2 1 6 6 H 1.48496 * 109.47406 * 150.00150 * 3 2 1 7 7 C 1.39890 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99896 * 189.77198 * 7 2 1 9 9 C 1.41157 * 120.00417 * 9.77001 * 7 2 1 10 10 C 1.40869 * 120.16369 * 29.87249 * 9 7 2 11 11 C 1.36372 * 119.83076 * 179.70501 * 10 9 7 12 12 C 1.39476 * 120.16726 * 0.27218 * 11 10 9 13 13 N 1.39244 * 119.83188 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99920 * 36.54682 * 13 12 11 15 15 O 1.21574 * 119.99941 * 355.36000 * 14 13 12 16 16 N 1.34783 * 119.99798 * 175.36124 * 14 13 12 17 17 C 1.46382 * 119.69961 * 4.15301 * 16 14 13 18 18 C 1.53654 * 109.25109 * 115.72365 * 17 16 14 19 19 S 1.81664 * 108.90780 * 58.41980 * 18 17 16 20 20 O 1.42091 * 108.65402 * 189.98038 * 19 18 17 21 21 O 1.42099 * 108.72175 * 58.70847 * 19 18 17 22 22 C 1.81665 * 101.38583 * 304.33385 * 19 18 17 23 23 C 1.46382 * 119.69489 * 184.42803 * 16 14 13 24 24 C 1.39480 * 120.33397 * 0.02562 * 12 11 10 25 25 C 1.36373 * 120.17061 * 359.97438 * 24 12 11 26 26 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.07952 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.91288 * 180.29637 * 11 10 9 29 29 H 0.97008 * 119.99879 * 216.54488 * 13 12 11 30 30 H 1.09003 * 109.46242 * 235.74100 * 17 16 14 31 31 H 1.08998 * 109.46929 * 355.71167 * 17 16 14 32 32 H 1.09000 * 109.66818 * 298.54136 * 18 17 16 33 33 H 1.09004 * 109.49280 * 178.20054 * 18 17 16 34 34 H 1.08992 * 109.56091 * 295.71810 * 22 19 18 35 35 H 1.09004 * 109.55929 * 175.39953 * 22 19 18 36 36 H 1.08998 * 109.47065 * 4.28364 * 23 16 14 37 37 H 1.09003 * 109.46263 * 124.27304 * 23 16 14 38 38 H 1.08005 * 119.91475 * 180.02562 * 24 12 11 39 39 H 1.08001 * 120.08737 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0764 -1.2183 0.1593 9 6 1.3178 -2.4252 -0.2063 10 6 0.1527 -2.4508 -0.9978 11 6 -0.5056 -3.6282 -1.1981 12 6 -0.0312 -4.8041 -0.6171 13 7 -0.7092 -6.0023 -0.8258 14 6 -1.2781 -6.2552 -2.0211 15 8 -1.2729 -5.4040 -2.8892 16 7 -1.8530 -7.4519 -2.2541 17 6 -1.9366 -8.4385 -1.1760 18 6 -3.4133 -8.6939 -0.8365 19 16 -4.2676 -9.2796 -2.3289 20 8 -5.6659 -9.2924 -2.0766 21 8 -3.6320 -10.4670 -2.7819 22 6 -3.9008 -7.9409 -3.5008 23 6 -2.3825 -7.7552 -3.5847 24 6 1.1181 -4.7856 0.1729 25 6 1.7871 -3.6159 0.3823 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2158 -1.5409 -1.4483 28 1 -1.3962 -3.6502 -1.8086 29 1 -0.7719 -6.6550 -0.1109 30 1 -1.4692 -9.3690 -1.4981 31 1 -1.4195 -8.0585 -0.2949 32 1 -3.8755 -7.7693 -0.4906 33 1 -3.4812 -9.4518 -0.0559 34 1 -4.3629 -7.0163 -3.1550 35 1 -4.2915 -8.2000 -4.4849 36 1 -2.1541 -6.9330 -4.2627 37 1 -1.9247 -8.6715 -3.9575 38 1 1.4797 -5.7003 0.6192 39 1 2.6772 -3.6032 0.9939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330670618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:08 Heat of formation + Delta-G solvation = -79.209410 kcal Electronic energy + Delta-G solvation = -24960.674017 eV Core-core repulsion = 21188.212760 eV Total energy + Delta-G solvation = -3772.461257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78687 -39.49100 -38.23182 -37.49293 -37.12629 -36.29437 -34.82296 -33.01019 -31.72016 -31.31238 -30.38756 -26.89689 -25.27533 -24.66004 -23.14818 -22.61360 -20.96464 -20.08615 -19.45449 -19.19976 -18.13393 -17.47187 -17.35529 -17.06256 -16.87357 -16.75327 -16.26295 -15.76117 -15.57460 -15.26912 -14.82001 -14.50935 -14.24853 -14.07013 -13.89106 -13.62754 -13.48651 -13.32109 -13.29200 -13.19475 -13.08335 -12.85536 -12.85171 -12.78956 -12.39766 -11.83467 -11.71700 -11.54403 -11.25524 -11.19669 -10.96848 -10.64988 -10.05786 -9.42288 -8.77610 -8.53249 -6.27993 -1.00027 0.86591 1.17002 1.39600 1.44472 1.51970 1.53713 1.66890 2.06589 2.23337 2.66054 2.79939 2.83740 2.97479 3.31939 3.69327 3.74666 3.86439 4.03971 4.06827 4.25424 4.45974 4.50270 4.57316 4.70357 4.76394 4.84883 5.00184 5.10244 5.17246 5.30887 5.34150 5.44954 5.56678 5.74956 5.99919 6.11869 6.14343 6.38277 6.72107 6.91882 6.96908 7.03925 7.55108 8.40368 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.002568 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.890829 B =10900.322415 C =11174.559584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.071 3.929 10 C -0.172 4.172 11 C -0.102 4.102 12 C 0.029 3.971 13 N -0.655 5.655 14 C 0.697 3.303 15 O -0.613 6.613 16 N -0.636 5.636 17 C 0.109 3.891 18 C -0.613 4.613 19 S 2.437 3.563 20 O -0.981 6.981 21 O -0.961 6.961 22 C -0.615 4.615 23 C 0.130 3.870 24 C -0.101 4.101 25 C -0.217 4.217 26 H 0.284 0.716 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.414 0.586 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.179 0.821 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 -17.485 -1.092 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.069 3.931 10 C -0.192 4.192 11 C -0.122 4.122 12 C -0.065 4.065 13 N -0.306 5.306 14 C 0.399 3.601 15 O -0.492 6.492 16 N -0.374 5.374 17 C -0.015 4.015 18 C -0.745 4.745 19 S 2.622 3.378 20 O -0.978 6.978 21 O -0.958 6.958 22 C -0.746 4.746 23 C 0.006 3.994 24 C -0.121 4.121 25 C -0.237 4.237 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.255 0.745 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.165 0.835 33 H 0.197 0.803 34 H 0.157 0.843 35 H 0.184 0.816 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.585 -17.569 -1.847 18.853 hybrid contribution 0.306 1.593 0.339 1.658 sum -6.278 -15.976 -1.508 17.231 Atomic orbital electron populations 1.69894 1.08877 1.30095 1.37533 1.26760 0.95613 1.04528 0.91597 0.85165 0.79042 0.75997 0.79247 1.19135 1.19472 1.17910 1.19790 0.95941 0.91591 1.45343 0.90378 1.18015 0.92297 0.93603 0.89212 1.20919 0.99723 0.96333 1.02213 1.20586 0.99389 0.92126 1.00117 1.17035 0.96613 0.84389 1.08438 1.42071 1.56171 1.19340 1.12985 1.16097 0.78873 0.82512 0.82609 1.90915 1.65059 1.46546 1.46647 1.47344 1.62956 1.14112 1.13003 1.21731 0.93569 0.94496 0.91658 1.30622 1.07858 1.15283 1.20771 1.07293 0.74626 0.76731 0.79129 1.93559 1.31500 1.87564 1.85186 1.93560 1.77852 1.43740 1.80660 1.30560 1.05069 1.19688 1.19292 1.21216 0.89062 1.05231 0.83845 1.20382 0.93166 0.98131 1.00395 1.20870 1.03487 0.93322 1.06011 0.90534 0.88676 0.88500 0.74547 0.85859 0.86411 0.83516 0.80346 0.84339 0.81558 0.88215 0.86536 0.84552 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.99 10.85 21.82 0.24 -44.76 16 2 C 0.03 1.43 5.26 85.24 0.45 1.88 16 3 Si 0.98 38.93 29.57 68.60 2.03 40.96 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 7 C -0.50 -26.79 9.04 23.39 0.21 -26.57 16 8 H 0.08 4.01 7.86 -2.91 -0.02 3.99 16 9 C 0.07 3.84 5.54 -21.27 -0.12 3.72 16 10 C -0.17 -9.41 8.59 22.48 0.19 -9.22 16 11 C -0.10 -5.03 8.61 22.13 0.19 -4.84 16 12 C 0.03 1.20 6.28 38.56 0.24 1.44 16 13 N -0.65 -19.59 5.20 -316.79 -1.65 -21.24 16 14 C 0.70 21.39 8.09 179.05 1.45 22.84 16 15 O -0.61 -25.18 13.15 -3.95 -0.05 -25.23 16 16 N -0.64 -12.25 2.79 -838.79 -2.34 -14.60 16 17 C 0.11 1.15 6.23 86.62 0.54 1.69 16 18 C -0.61 -5.05 6.57 72.20 0.47 -4.57 16 19 S 2.44 33.04 5.29 -56.49 -0.30 32.74 16 20 O -0.98 -21.33 18.10 -127.38 -2.31 -23.63 16 21 O -0.96 -17.85 18.02 -127.38 -2.30 -20.14 16 22 C -0.62 -7.77 6.55 72.04 0.47 -7.30 16 23 C 0.13 2.17 6.18 86.46 0.53 2.71 16 24 C -0.10 -3.96 9.90 22.13 0.22 -3.74 16 25 C -0.22 -10.04 9.74 22.48 0.22 -9.82 16 26 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.10 5.60 6.26 -2.91 -0.02 5.58 16 28 H 0.10 4.89 6.30 -2.91 -0.02 4.87 16 29 H 0.41 8.38 6.17 -92.70 -0.57 7.81 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.12 0.92 5.41 -2.39 -0.01 0.91 16 32 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.18 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.17 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 2.16 6.90 -2.39 -0.02 2.14 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -80.67 333.06 -1.08 -81.74 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.53 Total: 25.95 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 5.07 Total: -31.79 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.76 Total: -80.59 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -4.65 Total: -69.01 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: 33.04 SS G_CDS: -0.30 Total: 32.74 kcal Total: -80.67 -1.08 -81.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330670618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.534 kcal (2) G-P(sol) polarization free energy of solvation -80.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds