Wall clock time and date at job start Tue Mar 31 2020 14:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47168 * 300.00269 * 3 2 1 6 6 H 1.48499 * 109.46967 * 60.00306 * 3 2 1 7 7 C 1.37871 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00286 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47413 * 180.02562 * 9 7 2 11 11 S 1.65602 * 120.00051 * 164.99721 * 10 9 7 12 12 O 1.42102 * 106.40118 * 311.46199 * 11 10 9 13 13 O 1.42097 * 106.40385 * 178.54110 * 11 10 9 14 14 C 1.76200 * 107.21639 * 64.99876 * 11 10 9 15 15 C 1.38329 * 120.28633 * 270.31486 * 14 11 10 16 16 C 1.37317 * 119.56036 * 180.43424 * 15 14 11 17 17 C 1.40579 * 121.47247 * 359.50868 * 16 15 14 18 18 C 1.37838 * 118.70434 * 359.86630 * 17 16 15 19 19 C 1.37583 * 120.27729 * 90.00374 * 14 11 10 20 20 C 1.49398 * 125.12196 * 180.83558 * 18 17 16 21 21 C 1.49694 * 115.79974 * 35.45415 * 20 18 17 22 22 C 1.50974 * 113.45178 * 282.38256 * 21 20 18 23 23 C 1.48668 * 111.90728 * 73.37741 * 22 21 20 24 24 O 1.21281 * 116.43313 * 144.38189 * 23 22 21 25 25 N 1.30282 * 127.13448 * 324.39048 * 23 22 21 26 26 H 0.97008 * 120.00008 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47293 * 59.99684 * 9 7 2 28 28 H 1.09009 * 109.46883 * 300.00330 * 9 7 2 29 29 H 0.97000 * 120.00248 * 345.00447 * 10 9 7 30 30 H 1.08003 * 120.21846 * 0.15545 * 15 14 11 31 31 H 1.08002 * 119.26670 * 179.79608 * 16 15 14 32 32 H 1.07997 * 119.25035 * 359.93605 * 19 14 11 33 33 H 1.08997 * 108.21302 * 157.09580 * 20 18 17 34 34 H 1.08998 * 108.21733 * 274.00862 * 20 18 17 35 35 H 1.08999 * 108.68559 * 43.40591 * 21 20 18 36 36 H 1.09002 * 108.68350 * 161.48690 * 21 20 18 37 37 H 1.09002 * 108.99246 * 194.00345 * 22 21 20 38 38 H 1.09002 * 108.99287 * 312.83105 * 22 21 20 39 39 H 0.96992 * 111.84365 * 189.99723 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3707 12 8 0.9250 -5.0301 1.5643 13 8 2.8236 -5.9880 0.2508 14 6 0.5644 -5.6355 -0.8936 15 6 -0.7870 -5.3672 -0.7695 16 6 -1.6506 -5.7663 -1.7597 17 6 -1.1921 -6.4355 -2.9078 18 6 0.1572 -6.6885 -3.0320 19 6 1.0244 -6.2851 -2.0158 20 6 0.8002 -7.3710 -4.1950 21 6 0.1964 -7.0837 -5.5343 22 6 -1.0845 -7.8406 -5.7908 23 6 -2.2200 -7.2922 -5.0033 24 8 -3.3068 -7.3063 -5.5414 25 7 -2.1757 -6.7980 -3.7987 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6246 -2.5570 0.8897 29 1 3.1349 -3.4541 -0.2179 30 1 -1.1609 -4.8513 0.1026 31 1 -2.7052 -5.5573 -1.6563 32 1 2.0808 -6.4876 -2.1124 33 1 1.8496 -7.0779 -4.2244 34 1 0.7537 -8.4470 -4.0271 35 1 -0.0095 -6.0155 -5.6027 36 1 0.9178 -7.3498 -6.3069 37 1 -1.3263 -7.7795 -6.8519 38 1 -0.9389 -8.8864 -5.5201 39 1 -3.0632 -6.6475 -3.4375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331444873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:11 Heat of formation + Delta-G solvation = -86.843374 kcal Electronic energy + Delta-G solvation = -25088.242525 eV Core-core repulsion = 21315.450235 eV Total energy + Delta-G solvation = -3772.792290 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49198 -39.22885 -36.77047 -35.90392 -35.51208 -35.34817 -34.65892 -32.19094 -31.67994 -30.31031 -27.51048 -26.77865 -24.81596 -23.31908 -22.52421 -21.59726 -20.15955 -18.91889 -18.26153 -17.54931 -17.47322 -17.06590 -15.96050 -15.90039 -15.57673 -15.36525 -15.02435 -14.65003 -14.32649 -14.20873 -14.01642 -13.73857 -13.52107 -13.20333 -12.70405 -12.50296 -12.23296 -12.15800 -11.84945 -11.65656 -11.64348 -11.59278 -11.54139 -11.19318 -11.16763 -10.99464 -10.76271 -10.61894 -10.32996 -10.16104 -9.46249 -9.00850 -8.94154 -8.45403 -8.27456 -6.21953 -4.26439 0.56863 0.98525 1.15636 2.24278 2.70359 3.22049 3.29834 3.31982 3.34701 3.73126 4.07103 4.22305 4.28952 4.31662 4.42103 4.46668 4.57185 4.76496 4.83133 5.08510 5.15455 5.16808 5.25103 5.32859 5.46063 5.56548 5.63000 5.72870 5.82048 5.85560 5.92733 6.11842 6.27983 6.39171 6.60905 7.14238 7.23658 7.29240 7.59862 7.75094 7.76309 8.13210 8.77993 9.38948 10.88453 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.003670 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.514311 B = 7628.437689 C = 8556.694344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.245 3.755 10 N -1.103 6.103 11 S 2.693 3.307 12 O -0.961 6.961 13 O -0.980 6.980 14 C -0.688 4.688 15 C 0.017 3.983 16 C -0.183 4.183 17 C 0.220 3.780 18 C -0.141 4.141 19 C 0.016 3.984 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.136 4.136 23 C 0.528 3.472 24 O -0.546 6.546 25 N -0.646 5.646 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.039 0.961 29 H 0.411 0.589 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -15.011 -9.146 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.122 3.878 10 N -0.865 5.865 11 S 2.780 3.220 12 O -0.951 6.951 13 O -0.971 6.971 14 C -0.774 4.774 15 C -0.003 4.003 16 C -0.204 4.204 17 C 0.123 3.877 18 C -0.145 4.145 19 C -0.004 4.004 20 C -0.117 4.117 21 C -0.161 4.161 22 C -0.176 4.176 23 C 0.317 3.683 24 O -0.424 6.424 25 N -0.283 5.283 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.245 0.755 30 H 0.168 0.832 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.961 -15.527 -8.916 17.931 hybrid contribution -0.046 1.257 -0.595 1.391 sum -1.007 -14.270 -9.511 17.179 Atomic orbital electron populations 1.69940 1.06058 1.27280 1.49546 1.24963 0.94972 0.99467 0.94755 0.86367 0.79976 0.82913 0.77726 1.19568 1.20890 1.20759 1.21228 0.93516 0.89872 1.52293 0.91523 1.19104 0.87817 0.83549 0.97336 1.55449 1.19588 1.23736 1.87726 1.01791 0.73175 0.72845 0.74149 1.93568 1.72658 1.86362 1.42540 1.93523 1.49558 1.66665 1.87310 1.31120 1.11529 1.16111 1.18611 1.20657 0.90933 0.91409 0.97292 1.21270 1.00976 1.03820 0.94327 1.17218 0.88330 0.93652 0.88537 1.19110 0.90984 1.05766 0.98637 1.20946 0.99791 0.89956 0.89704 1.19630 1.00438 1.00601 0.91040 1.20506 0.96357 1.01507 0.97686 1.21132 0.93173 1.01797 1.01491 1.19275 0.91626 0.76864 0.80536 1.90845 1.29637 1.56062 1.65837 1.42371 1.11138 1.59707 1.15054 0.92497 0.95989 0.94291 0.75479 0.83223 0.84673 0.83972 0.89543 0.90637 0.91189 0.89571 0.87363 0.87974 0.76542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -13.75 9.27 -34.44 -0.32 -14.07 16 8 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 9 C 0.25 5.79 5.98 -5.20 -0.03 5.76 16 10 N -1.10 -21.11 5.99 -11.66 -0.07 -21.18 16 11 S 2.69 47.16 5.74 -107.50 -0.62 46.54 16 12 O -0.96 -19.65 16.80 -57.17 -0.96 -20.61 16 13 O -0.98 -17.78 17.27 -57.17 -0.99 -18.76 16 14 C -0.69 -10.42 5.93 -39.79 -0.24 -10.66 16 15 C 0.02 0.24 9.52 -39.88 -0.38 -0.14 16 16 C -0.18 -2.24 9.51 -39.03 -0.37 -2.61 16 17 C 0.22 2.57 6.64 -84.55 -0.56 2.01 16 18 C -0.14 -1.62 5.69 -104.90 -0.60 -2.21 16 19 C 0.02 0.21 8.91 -39.33 -0.35 -0.14 16 20 C -0.08 -0.66 5.23 -30.14 -0.16 -0.82 16 21 C -0.12 -0.89 5.27 -29.38 -0.15 -1.05 16 22 C -0.14 -1.04 5.63 -29.87 -0.17 -1.21 16 23 C 0.53 5.77 7.51 -13.90 -0.10 5.66 16 24 O -0.55 -7.77 17.43 5.56 0.10 -7.68 16 25 N -0.65 -6.81 4.78 -11.87 -0.06 -6.86 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 1.00 7.75 -51.92 -0.40 0.59 16 29 H 0.41 7.15 8.54 -34.47 -0.29 6.85 16 30 H 0.15 2.16 7.67 -52.48 -0.40 1.76 16 31 H 0.14 1.30 7.70 -52.49 -0.40 0.90 16 32 H 0.14 1.61 7.30 -52.49 -0.38 1.23 16 33 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16 34 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 35 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.10 0.61 7.97 -51.93 -0.41 0.20 16 39 H 0.40 3.84 7.46 -40.82 -0.30 3.53 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -33.65 341.05 -9.90 -43.55 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.63 Total: 6.49 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.53 Total: -17.93 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.61 Total: -52.08 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.85 Total: -47.05 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.62 Total: 46.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.65 -9.90 -43.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331444873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.291 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds