Wall clock time and date at job start Tue Mar 31 2020 14:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47168 * 300.00269 * 3 2 1 6 6 H 1.48499 * 109.46967 * 60.00306 * 3 2 1 7 7 C 1.37871 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00286 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47413 * 180.02562 * 9 7 2 11 11 S 1.65602 * 120.00051 * 164.99721 * 10 9 7 12 12 O 1.42102 * 106.40118 * 311.46199 * 11 10 9 13 13 O 1.42097 * 106.40385 * 178.54110 * 11 10 9 14 14 C 1.76200 * 107.21639 * 64.99876 * 11 10 9 15 15 C 1.38329 * 120.28633 * 270.31486 * 14 11 10 16 16 C 1.37317 * 119.56036 * 180.43424 * 15 14 11 17 17 C 1.40579 * 121.47247 * 359.50868 * 16 15 14 18 18 C 1.37838 * 118.70434 * 359.86630 * 17 16 15 19 19 C 1.37583 * 120.27729 * 90.00374 * 14 11 10 20 20 C 1.49398 * 125.12196 * 180.83558 * 18 17 16 21 21 C 1.49694 * 115.79974 * 35.45415 * 20 18 17 22 22 C 1.50974 * 113.45178 * 282.38256 * 21 20 18 23 23 C 1.48668 * 111.90728 * 73.37741 * 22 21 20 24 24 O 1.21281 * 116.43313 * 144.38189 * 23 22 21 25 25 N 1.30282 * 127.13448 * 324.39048 * 23 22 21 26 26 H 0.97008 * 120.00008 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47293 * 59.99684 * 9 7 2 28 28 H 1.09009 * 109.46883 * 300.00330 * 9 7 2 29 29 H 0.97000 * 120.00248 * 345.00447 * 10 9 7 30 30 H 1.08003 * 120.21846 * 0.15545 * 15 14 11 31 31 H 1.08002 * 119.26670 * 179.79608 * 16 15 14 32 32 H 1.07997 * 119.25035 * 359.93605 * 19 14 11 33 33 H 1.08997 * 108.21302 * 157.09580 * 20 18 17 34 34 H 1.08998 * 108.21733 * 274.00862 * 20 18 17 35 35 H 1.08999 * 108.68559 * 43.40591 * 21 20 18 36 36 H 1.09002 * 108.68350 * 161.48690 * 21 20 18 37 37 H 1.09002 * 108.99246 * 194.00345 * 22 21 20 38 38 H 1.09002 * 108.99287 * 312.83105 * 22 21 20 39 39 H 0.96992 * 111.84365 * 189.99723 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3707 12 8 0.9250 -5.0301 1.5643 13 8 2.8236 -5.9880 0.2508 14 6 0.5644 -5.6355 -0.8936 15 6 -0.7870 -5.3672 -0.7695 16 6 -1.6506 -5.7663 -1.7597 17 6 -1.1921 -6.4355 -2.9078 18 6 0.1572 -6.6885 -3.0320 19 6 1.0244 -6.2851 -2.0158 20 6 0.8002 -7.3710 -4.1950 21 6 0.1964 -7.0837 -5.5343 22 6 -1.0845 -7.8406 -5.7908 23 6 -2.2200 -7.2922 -5.0033 24 8 -3.3068 -7.3063 -5.5414 25 7 -2.1757 -6.7980 -3.7987 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6246 -2.5570 0.8897 29 1 3.1349 -3.4541 -0.2179 30 1 -1.1609 -4.8513 0.1026 31 1 -2.7052 -5.5573 -1.6563 32 1 2.0808 -6.4876 -2.1124 33 1 1.8496 -7.0779 -4.2244 34 1 0.7537 -8.4470 -4.0271 35 1 -0.0095 -6.0155 -5.6027 36 1 0.9178 -7.3498 -6.3069 37 1 -1.3263 -7.7795 -6.8519 38 1 -0.9389 -8.8864 -5.5201 39 1 -3.0632 -6.6475 -3.4375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331444873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:11 Heat of formation + Delta-G solvation = -111.852211 kcal Electronic energy + Delta-G solvation = -25089.326990 eV Core-core repulsion = 21315.450235 eV Total energy + Delta-G solvation = -3773.876755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37264 -40.20628 -38.26795 -36.91669 -36.69130 -36.44794 -36.34541 -34.11131 -32.54690 -31.32212 -28.71372 -28.25779 -25.73010 -24.53796 -24.22850 -22.34481 -21.15629 -20.30480 -19.17191 -19.13355 -18.49337 -18.23762 -17.67395 -17.15186 -16.78037 -16.46737 -16.16132 -15.94463 -15.36299 -15.09744 -14.98549 -14.87331 -14.66738 -14.52757 -14.21425 -14.05320 -13.56035 -13.36703 -13.21754 -13.13643 -12.99128 -12.78618 -12.49993 -12.37643 -12.30445 -12.12766 -12.05620 -12.02543 -11.76433 -11.38304 -11.18510 -10.83754 -10.11135 -9.96624 -9.42419 -8.24089 -6.35510 -0.58421 -0.33151 0.15698 1.34104 1.44867 1.46635 1.58584 1.83510 2.13695 2.41091 2.47801 2.83903 3.11557 3.30130 3.36257 3.56100 3.63494 3.86341 3.88276 4.05083 4.19467 4.26191 4.47882 4.62813 4.65792 4.69234 4.80596 4.83103 4.95659 5.02676 5.07639 5.13760 5.23246 5.30171 5.33380 5.41869 5.60338 5.75985 5.99922 6.26331 6.34162 6.74763 6.79411 7.34309 8.87121 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.003670 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.514311 B = 7628.437689 C = 8556.694344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.258 3.742 10 N -1.103 6.103 11 S 2.709 3.291 12 O -0.997 6.997 13 O -0.984 6.984 14 C -0.698 4.698 15 C -0.008 4.008 16 C -0.182 4.182 17 C 0.224 3.776 18 C -0.135 4.135 19 C 0.010 3.990 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.134 4.134 23 C 0.526 3.474 24 O -0.582 6.582 25 N -0.641 5.641 26 H 0.268 0.732 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.419 0.581 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -15.941 -11.131 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.587 4.587 8 H 0.093 0.907 9 C 0.134 3.866 10 N -0.864 5.864 11 S 2.801 3.199 12 O -0.987 6.987 13 O -0.975 6.975 14 C -0.789 4.789 15 C -0.028 4.028 16 C -0.203 4.203 17 C 0.125 3.875 18 C -0.139 4.139 19 C -0.010 4.010 20 C -0.122 4.122 21 C -0.155 4.155 22 C -0.173 4.173 23 C 0.317 3.683 24 O -0.463 6.463 25 N -0.278 5.278 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.254 0.746 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.329 -16.454 -10.867 19.721 hybrid contribution -0.497 1.430 -0.040 1.514 sum -0.168 -15.024 -10.907 18.566 Atomic orbital electron populations 1.70056 1.07611 1.28259 1.50563 1.25852 0.95784 1.03097 0.94341 0.85322 0.79117 0.78456 0.77645 1.18412 1.20383 1.20697 1.21666 0.94204 0.90962 1.51884 0.90702 1.18672 0.88009 0.84366 0.95584 1.55263 1.19553 1.23601 1.88018 1.00998 0.72954 0.72006 0.73924 1.93518 1.73291 1.86619 1.45304 1.93506 1.50230 1.66170 1.87576 1.30604 1.10990 1.18320 1.18940 1.20680 0.91291 0.92775 0.98044 1.21485 1.01855 1.03103 0.93862 1.17291 0.88827 0.93056 0.88294 1.19512 0.90632 1.04603 0.99186 1.21234 1.01056 0.89479 0.89208 1.19794 1.00958 1.01446 0.90046 1.20508 0.96733 1.00317 0.97974 1.21224 0.91852 1.02837 1.01399 1.19967 0.92140 0.75943 0.80242 1.90836 1.31368 1.57632 1.66504 1.42364 1.11081 1.59282 1.15034 0.92333 0.96859 0.96973 0.74605 0.84331 0.82517 0.82202 0.87989 0.88481 0.92969 0.86527 0.86392 0.85584 0.76259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.41 13.29 21.45 0.28 -52.13 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.97 41.60 29.54 68.60 2.03 43.62 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -28.71 9.27 25.60 0.24 -28.47 16 8 H 0.07 3.69 7.65 -2.91 -0.02 3.67 16 9 C 0.26 12.59 5.98 85.63 0.51 13.11 16 10 N -1.10 -43.04 5.99 -190.79 -1.14 -44.18 16 11 S 2.71 96.76 5.74 -56.49 -0.32 96.44 16 12 O -1.00 -42.52 16.80 -128.00 -2.15 -44.67 16 13 O -0.98 -35.30 17.27 -128.00 -2.21 -37.51 16 14 C -0.70 -21.25 5.93 22.14 0.13 -21.11 16 15 C -0.01 -0.24 9.52 22.07 0.21 -0.03 16 16 C -0.18 -4.39 9.51 22.62 0.22 -4.17 16 17 C 0.22 4.87 6.64 38.72 0.26 5.13 16 18 C -0.14 -2.79 5.69 -20.05 -0.11 -2.90 16 19 C 0.01 0.25 8.91 22.43 0.20 0.45 16 20 C -0.09 -1.09 5.23 28.38 0.15 -0.94 16 21 C -0.12 -1.28 5.27 28.88 0.15 -1.12 16 22 C -0.13 -1.60 5.63 28.56 0.16 -1.44 16 23 C 0.53 10.50 7.51 87.71 0.66 11.16 16 24 O -0.58 -15.98 17.43 -3.03 -0.05 -16.03 16 25 N -0.64 -12.52 4.78 -312.27 -1.49 -14.01 16 26 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.01 0.66 7.75 -2.38 -0.02 0.64 16 29 H 0.42 14.61 8.54 -96.75 -0.83 13.78 16 30 H 0.14 4.33 7.67 -2.91 -0.02 4.30 16 31 H 0.16 2.94 7.70 -2.91 -0.02 2.92 16 32 H 0.16 3.27 7.30 -2.91 -0.02 3.25 16 33 H 0.10 1.04 7.65 -2.39 -0.02 1.02 16 34 H 0.10 0.90 7.93 -2.39 -0.02 0.88 16 35 H 0.05 0.78 8.06 -2.39 -0.02 0.76 16 36 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.12 1.24 8.08 -2.39 -0.02 1.22 16 38 H 0.13 0.96 7.97 -2.39 -0.02 0.94 16 39 H 0.40 7.31 7.46 -92.71 -0.69 6.62 16 Total: -1.00 -72.94 341.05 -2.24 -75.18 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.41 Total: 22.69 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.23 Total: -29.39 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -2.35 Total: -110.32 kcal Atomic # 8 Polarization: -93.80 SS G_CDS: -4.41 Total: -98.21 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 96.76 SS G_CDS: -0.32 Total: 96.44 kcal Total: -72.94 -2.24 -75.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331444873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.671 kcal (2) G-P(sol) polarization free energy of solvation -72.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds