Wall clock time and date at job start Tue Mar 31 2020 14:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48501 * 109.46659 * 269.99948 * 3 2 1 5 5 H 1.48494 * 109.47010 * 29.99810 * 3 2 1 6 6 H 1.48498 * 109.46998 * 150.00205 * 3 2 1 7 7 C 1.40234 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99599 * 175.59703 * 7 2 1 9 9 C 1.41085 * 120.00228 * 355.60755 * 7 2 1 10 10 C 1.40906 * 120.09562 * 214.76445 * 9 7 2 11 11 C 1.36306 * 119.88852 * 180.02562 * 10 9 7 12 12 C 1.40033 * 120.10746 * 0.02562 * 11 10 9 13 13 C 1.47588 * 119.89838 * 179.97438 * 12 11 10 14 14 O 1.21609 * 119.99882 * 359.97438 * 13 12 11 15 15 N 1.34784 * 120.00302 * 180.02562 * 13 12 11 16 16 C 1.39971 * 119.99962 * 184.31523 * 15 13 12 17 17 C 1.39267 * 119.87833 * 144.78705 * 16 15 13 18 18 C 1.37902 * 120.39086 * 179.70001 * 17 16 15 19 19 C 1.38603 * 119.98763 * 0.02654 * 18 17 16 20 20 O 1.35346 * 133.71721 * 179.97438 * 19 18 17 21 21 C 1.34363 * 108.19224 * 180.02562 * 20 19 18 22 22 O 1.35189 * 124.92920 * 180.02562 * 21 20 19 23 23 N 1.30626 * 110.14196 * 359.97438 * 21 20 19 24 24 C 1.36169 * 108.72527 * 0.02562 * 23 21 20 25 25 C 1.38389 * 119.88306 * 324.51204 * 16 15 13 26 26 C 1.40041 * 120.20578 * 0.23526 * 12 11 10 27 27 C 1.36299 * 120.10367 * 359.47708 * 26 12 11 28 28 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.05778 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.94545 * 179.97438 * 11 10 9 31 31 H 0.96995 * 119.99713 * 4.31728 * 15 13 12 32 32 H 1.08000 * 119.80471 * 359.73336 * 17 16 15 33 33 H 1.07999 * 120.00763 * 180.02562 * 18 17 16 34 34 H 0.96699 * 113.99234 * 269.97089 * 22 21 20 35 35 H 1.08004 * 120.16068 * 0.26312 * 25 16 15 36 36 H 1.07995 * 119.94614 * 179.74762 * 26 12 11 37 37 H 1.08002 * 120.05455 * 180.25814 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4380 2.6526 0.7000 6 1 3.5381 1.4401 0.7000 7 6 2.0076 -1.2145 0.0005 8 1 3.0852 -1.2159 -0.0713 9 6 1.3052 -2.4345 0.0947 10 6 1.8656 -3.5201 0.7968 11 6 1.1836 -4.6970 0.8846 12 6 -0.0717 -4.8283 0.2781 13 6 -0.8059 -6.1049 0.3756 14 8 -0.3204 -7.0408 0.9816 15 7 -2.0141 -6.2338 -0.2078 16 6 -2.7502 -7.4124 -0.0398 17 6 -4.1390 -7.3563 0.0484 18 6 -4.8751 -8.5115 0.2079 19 6 -4.2329 -9.7376 0.2818 20 8 -4.6639 -11.0117 0.4326 21 6 -3.5904 -11.8197 0.4381 22 8 -3.6346 -13.1645 0.5693 23 7 -2.4980 -11.1175 0.2972 24 6 -2.8343 -9.8020 0.1940 25 6 -2.0959 -8.6297 0.0325 26 6 -0.6302 -3.7539 -0.4254 27 6 0.0417 -2.5713 -0.5136 28 1 -0.4850 0.8400 -0.0004 29 1 2.8342 -3.4201 1.2638 30 1 1.6124 -5.5298 1.4222 31 1 -2.3734 -5.5099 -0.7441 32 1 -4.6425 -6.4026 -0.0089 33 1 -5.9518 -8.4609 0.2751 34 1 -3.5885 -13.4720 1.4849 35 1 -1.0189 -8.6717 -0.0363 36 1 -1.5968 -3.8611 -0.8950 37 1 -0.3916 -1.7419 -1.0528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340039909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:35 Heat of formation + Delta-G solvation = -7.633416 kcal Electronic energy + Delta-G solvation = -24997.340047 eV Core-core repulsion = 21092.538607 eV Total energy + Delta-G solvation = -3904.801440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.32216 -40.05888 -38.44101 -37.76403 -36.94326 -34.92040 -33.97979 -33.84254 -30.71811 -29.91129 -29.57081 -28.72816 -26.03323 -23.98086 -23.15496 -22.17927 -21.87426 -21.05091 -19.94884 -19.59123 -18.42819 -17.71322 -17.57574 -17.28308 -16.52314 -15.79333 -15.42752 -15.00021 -14.85208 -14.51002 -14.23849 -14.10697 -13.69374 -13.26789 -13.12667 -12.91645 -12.80121 -12.57917 -12.20109 -11.93338 -11.72983 -11.61942 -11.49790 -11.32240 -11.01767 -10.71193 -10.65725 -10.12127 -10.05597 -9.66430 -9.51548 -9.17689 -8.54997 -8.08877 -7.83878 -7.52566 -6.97197 -4.72885 0.47596 1.08387 1.71970 2.03479 2.19681 2.87353 2.91177 2.93177 2.97447 3.14379 3.46086 3.52327 3.71859 3.80907 4.39322 4.49359 4.75868 4.89864 4.97965 5.16439 5.40535 5.42345 5.59897 5.88269 5.90432 5.94287 6.10604 6.18560 6.19788 6.29448 6.66853 6.77900 6.77983 6.85314 6.94552 7.04007 7.35599 7.39136 7.47796 7.64472 7.78701 7.90417 7.99568 8.33674 8.56841 8.64712 8.73103 9.91064 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.002195 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.991331 B =12750.730116 C =13360.666329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.069 3.931 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.228 4.228 11 C -0.025 4.025 12 C -0.276 4.276 13 C 0.570 3.430 14 O -0.550 6.550 15 N -0.680 5.680 16 C 0.166 3.834 17 C -0.114 4.114 18 C -0.073 4.073 19 C -0.005 4.005 20 O -0.229 6.229 21 C 0.410 3.590 22 O -0.410 6.410 23 N -0.459 5.459 24 C 0.049 3.951 25 C -0.068 4.068 26 C -0.068 4.068 27 C -0.166 4.166 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.413 0.587 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.418 0.582 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -10.995 -0.253 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.247 4.247 11 C -0.044 4.044 12 C -0.280 4.280 13 C 0.367 3.633 14 O -0.430 6.430 15 N -0.325 5.325 16 C 0.068 3.932 17 C -0.134 4.134 18 C -0.093 4.093 19 C -0.055 4.055 20 O -0.123 6.123 21 C 0.160 3.840 22 O -0.218 6.218 23 N -0.202 5.202 24 C -0.064 4.064 25 C -0.089 4.089 26 C -0.087 4.087 27 C -0.185 4.185 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.251 0.749 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.278 0.722 35 H 0.174 0.826 36 H 0.109 0.891 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.515 -11.731 -0.412 15.110 hybrid contribution -0.695 1.059 0.424 1.336 sum -10.210 -10.672 0.012 14.769 Atomic orbital electron populations 1.69660 1.07647 1.29698 1.34342 1.26084 0.95048 1.01805 0.92054 0.86077 0.80339 0.79602 0.79458 1.19115 1.19948 1.18344 1.19814 0.95287 0.90152 1.41999 0.89814 1.17890 0.91826 0.91737 0.86172 1.20870 1.01823 0.95047 1.07007 1.20389 0.92534 0.96388 0.95129 1.18819 0.99388 0.93228 1.16608 1.18815 0.79212 0.88768 0.76506 1.90674 1.67340 1.41377 1.43598 1.43621 1.19947 1.16149 1.52808 1.17474 0.90333 0.86414 0.98954 1.20864 0.92144 0.98267 1.02147 1.19552 1.00231 0.86519 1.02968 1.19963 0.93980 0.83163 1.08395 1.84441 1.36927 1.16102 1.74827 1.22427 0.79476 0.84702 0.97394 1.84901 1.93987 1.08743 1.34127 1.71049 1.25607 1.02622 1.20957 1.19348 0.91239 0.90977 1.04819 1.20414 1.01836 0.87038 0.99661 1.20553 0.97280 0.93561 0.97309 1.21279 0.97550 0.96382 1.03291 0.90401 0.88069 0.87823 0.74943 0.83586 0.84246 0.72158 0.82556 0.89106 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.30 10.59 55.56 0.59 -17.71 16 2 C 0.07 1.56 5.42 -17.31 -0.09 1.47 16 3 Si 0.92 17.02 29.56 -169.99 -5.03 11.99 16 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.44 -10.65 9.03 -37.75 -0.34 -10.99 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 9 C 0.13 3.09 5.55 -106.80 -0.59 2.49 16 10 C -0.23 -5.24 9.73 -39.27 -0.38 -5.62 16 11 C -0.03 -0.56 9.52 -39.60 -0.38 -0.94 16 12 C -0.28 -5.84 5.89 -104.73 -0.62 -6.46 16 13 C 0.57 11.20 7.60 -12.44 -0.09 11.10 16 14 O -0.55 -12.13 13.77 5.27 0.07 -12.06 16 15 N -0.68 -10.52 5.28 -10.78 -0.06 -10.58 16 16 C 0.17 2.43 6.29 -83.70 -0.53 1.90 16 17 C -0.11 -1.28 9.94 -39.32 -0.39 -1.67 16 18 C -0.07 -0.80 10.05 -39.57 -0.40 -1.20 16 19 C -0.01 -0.07 7.42 -38.68 -0.29 -0.36 16 20 O -0.23 -2.95 10.79 -20.71 -0.22 -3.17 16 21 C 0.41 5.14 9.54 52.25 0.50 5.63 16 22 O -0.41 -3.49 13.62 -40.55 -0.55 -4.04 16 23 N -0.46 -7.10 11.38 -12.81 -0.15 -7.25 16 24 C 0.05 0.76 7.23 -84.71 -0.61 0.15 16 25 C -0.07 -1.12 8.74 -39.06 -0.34 -1.46 16 26 C -0.07 -1.39 9.47 -39.60 -0.38 -1.76 16 27 C -0.17 -3.83 8.61 -39.27 -0.34 -4.17 16 28 H 0.28 5.99 8.29 -40.82 -0.34 5.65 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 31 H 0.41 5.30 6.83 -40.82 -0.28 5.02 16 32 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.42 0.99 9.06 45.56 0.41 1.40 16 35 H 0.16 2.92 6.23 -52.48 -0.33 2.59 16 36 H 0.09 1.51 6.38 -52.49 -0.33 1.17 16 37 H 0.13 3.14 6.13 -52.49 -0.32 2.81 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -30.27 328.92 -7.72 -37.99 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -2.06 Total: 11.74 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -5.27 Total: -11.87 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.39 Total: -35.53 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.70 Total: -19.27 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.27 -7.72 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.354 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds