Wall clock time and date at job start Tue Mar 31 2020 14:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48501 * 109.46659 * 269.99948 * 3 2 1 5 5 H 1.48494 * 109.47010 * 29.99810 * 3 2 1 6 6 H 1.48498 * 109.46998 * 150.00205 * 3 2 1 7 7 C 1.40234 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99599 * 175.59703 * 7 2 1 9 9 C 1.41085 * 120.00228 * 355.60755 * 7 2 1 10 10 C 1.40906 * 120.09562 * 214.76445 * 9 7 2 11 11 C 1.36306 * 119.88852 * 180.02562 * 10 9 7 12 12 C 1.40033 * 120.10746 * 0.02562 * 11 10 9 13 13 C 1.47588 * 119.89838 * 179.97438 * 12 11 10 14 14 O 1.21609 * 119.99882 * 359.97438 * 13 12 11 15 15 N 1.34784 * 120.00302 * 180.02562 * 13 12 11 16 16 C 1.39971 * 119.99962 * 184.31523 * 15 13 12 17 17 C 1.39267 * 119.87833 * 144.78705 * 16 15 13 18 18 C 1.37902 * 120.39086 * 179.70001 * 17 16 15 19 19 C 1.38603 * 119.98763 * 0.02654 * 18 17 16 20 20 O 1.35346 * 133.71721 * 179.97438 * 19 18 17 21 21 C 1.34363 * 108.19224 * 180.02562 * 20 19 18 22 22 O 1.35189 * 124.92920 * 180.02562 * 21 20 19 23 23 N 1.30626 * 110.14196 * 359.97438 * 21 20 19 24 24 C 1.36169 * 108.72527 * 0.02562 * 23 21 20 25 25 C 1.38389 * 119.88306 * 324.51204 * 16 15 13 26 26 C 1.40041 * 120.20578 * 0.23526 * 12 11 10 27 27 C 1.36299 * 120.10367 * 359.47708 * 26 12 11 28 28 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.05778 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.94545 * 179.97438 * 11 10 9 31 31 H 0.96995 * 119.99713 * 4.31728 * 15 13 12 32 32 H 1.08000 * 119.80471 * 359.73336 * 17 16 15 33 33 H 1.07999 * 120.00763 * 180.02562 * 18 17 16 34 34 H 0.96699 * 113.99234 * 269.97089 * 22 21 20 35 35 H 1.08004 * 120.16068 * 0.26312 * 25 16 15 36 36 H 1.07995 * 119.94614 * 179.74762 * 26 12 11 37 37 H 1.08002 * 120.05455 * 180.25814 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4380 2.6526 0.7000 6 1 3.5381 1.4401 0.7000 7 6 2.0076 -1.2145 0.0005 8 1 3.0852 -1.2159 -0.0713 9 6 1.3052 -2.4345 0.0947 10 6 1.8656 -3.5201 0.7968 11 6 1.1836 -4.6970 0.8846 12 6 -0.0717 -4.8283 0.2781 13 6 -0.8059 -6.1049 0.3756 14 8 -0.3204 -7.0408 0.9816 15 7 -2.0141 -6.2338 -0.2078 16 6 -2.7502 -7.4124 -0.0398 17 6 -4.1390 -7.3563 0.0484 18 6 -4.8751 -8.5115 0.2079 19 6 -4.2329 -9.7376 0.2818 20 8 -4.6639 -11.0117 0.4326 21 6 -3.5904 -11.8197 0.4381 22 8 -3.6346 -13.1645 0.5693 23 7 -2.4980 -11.1175 0.2972 24 6 -2.8343 -9.8020 0.1940 25 6 -2.0959 -8.6297 0.0325 26 6 -0.6302 -3.7539 -0.4254 27 6 0.0417 -2.5713 -0.5136 28 1 -0.4850 0.8400 -0.0004 29 1 2.8342 -3.4201 1.2638 30 1 1.6124 -5.5298 1.4222 31 1 -2.3734 -5.5099 -0.7441 32 1 -4.6425 -6.4026 -0.0089 33 1 -5.9518 -8.4609 0.2751 34 1 -3.5885 -13.4720 1.4849 35 1 -1.0189 -8.6717 -0.0363 36 1 -1.5968 -3.8611 -0.8950 37 1 -0.3916 -1.7419 -1.0528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340039909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:34 Heat of formation + Delta-G solvation = -30.684139 kcal Electronic energy + Delta-G solvation = -24998.339601 eV Core-core repulsion = 21092.538607 eV Total energy + Delta-G solvation = -3905.800995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.32904 -41.45483 -39.57342 -38.97720 -38.29109 -36.05361 -35.61912 -35.14148 -32.26127 -31.31928 -31.08913 -29.89833 -27.68187 -25.13182 -24.27558 -23.45321 -23.12398 -22.74814 -21.39171 -20.54365 -19.57766 -19.32518 -18.84127 -18.33053 -17.83056 -17.25090 -16.73519 -16.13578 -15.99908 -15.76547 -15.73052 -15.51613 -15.07157 -14.74786 -14.52520 -14.09568 -13.89501 -13.74084 -13.70152 -13.58102 -13.33140 -12.84263 -12.72087 -12.61609 -12.52996 -12.34506 -11.77215 -11.69642 -11.39689 -11.30034 -11.16172 -10.74588 -9.59760 -9.56757 -9.40809 -9.13624 -8.65733 -6.52346 -0.47797 -0.05283 0.42933 0.81664 1.13519 1.20547 1.41857 1.43060 1.54829 1.98932 2.03191 2.19718 2.44774 2.55249 2.80973 3.38223 3.63451 3.78174 3.95300 4.11893 4.14573 4.16652 4.31532 4.43015 4.54471 4.83179 4.93145 4.97796 5.05387 5.07740 5.11566 5.17033 5.20570 5.31114 5.61446 5.70146 5.78744 5.92214 6.02171 6.18985 6.24652 6.38021 6.49869 6.57706 6.80654 6.88213 7.24171 8.25052 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.002195 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.991331 B =12750.730116 C =13360.666329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.032 3.968 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.241 4.241 11 C -0.037 4.037 12 C -0.278 4.278 13 C 0.572 3.428 14 O -0.579 6.579 15 N -0.662 5.662 16 C 0.153 3.847 17 C -0.099 4.099 18 C -0.054 4.054 19 C -0.011 4.011 20 O -0.224 6.224 21 C 0.429 3.571 22 O -0.404 6.404 23 N -0.504 5.504 24 C 0.025 3.975 25 C -0.097 4.097 26 C -0.055 4.055 27 C -0.185 4.185 28 H 0.293 0.707 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.427 0.573 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.446 0.554 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 -10.854 -0.446 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.506 4.506 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.261 4.261 11 C -0.057 4.057 12 C -0.283 4.283 13 C 0.368 3.632 14 O -0.461 6.461 15 N -0.308 5.308 16 C 0.056 3.944 17 C -0.119 4.119 18 C -0.073 4.073 19 C -0.061 4.061 20 O -0.119 6.119 21 C 0.179 3.821 22 O -0.216 6.216 23 N -0.248 5.248 24 C -0.087 4.087 25 C -0.119 4.119 26 C -0.074 4.074 27 C -0.205 4.205 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.268 0.732 32 H 0.205 0.795 33 H 0.201 0.799 34 H 0.311 0.689 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.563 -11.623 -0.602 17.125 hybrid contribution 0.127 0.734 0.501 0.898 sum -12.436 -10.889 -0.101 16.530 Atomic orbital electron populations 1.69691 1.08725 1.30983 1.34434 1.26870 0.95854 1.04504 0.91164 0.85053 0.78810 0.75385 0.79664 1.18340 1.19109 1.18540 1.20032 0.95472 0.91121 1.43969 0.90015 1.18231 0.92897 0.92330 0.86944 1.20988 1.02295 0.95300 1.07476 1.20533 0.93359 0.96200 0.95580 1.19082 0.99129 0.94250 1.15805 1.18583 0.80321 0.87701 0.76615 1.90677 1.68405 1.42029 1.45003 1.43287 1.18586 1.16977 1.51957 1.17683 0.91780 0.85065 0.99854 1.21239 0.90193 1.00225 1.00230 1.20091 1.02214 0.84913 1.00077 1.20340 0.93128 0.84189 1.08395 1.84462 1.36763 1.15924 1.74721 1.22532 0.78934 0.85626 0.95038 1.84884 1.93682 1.06305 1.36740 1.71003 1.27263 1.03172 1.23365 1.19427 0.92621 0.90884 1.05768 1.20214 1.00482 0.88713 1.02528 1.20853 0.98464 0.92032 0.96056 1.21303 0.97777 0.97266 1.04126 0.89572 0.87670 0.87769 0.73227 0.79543 0.79909 0.68855 0.86046 0.84892 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.85 10.59 21.87 0.23 -37.62 16 2 C 0.03 1.48 5.42 85.35 0.46 1.94 16 3 Si 0.99 34.69 29.56 68.60 2.03 36.72 16 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.48 -23.58 9.03 23.45 0.21 -23.37 16 8 H 0.08 3.89 7.85 -2.91 -0.02 3.87 16 9 C 0.10 4.96 5.55 -21.28 -0.12 4.84 16 10 C -0.24 -11.51 9.73 22.47 0.22 -11.29 16 11 C -0.04 -1.72 9.52 22.25 0.21 -1.50 16 12 C -0.28 -11.80 5.89 -19.94 -0.12 -11.92 16 13 C 0.57 22.48 7.60 86.71 0.66 23.14 16 14 O -0.58 -26.35 13.77 -4.06 -0.06 -26.40 16 15 N -0.66 -19.48 5.28 -306.28 -1.62 -21.10 16 16 C 0.15 4.25 6.29 38.12 0.24 4.49 16 17 C -0.10 -1.84 9.94 22.44 0.22 -1.62 16 18 C -0.05 -0.95 10.05 22.28 0.22 -0.73 16 19 C -0.01 -0.26 7.42 22.85 0.17 -0.09 16 20 O -0.22 -5.26 10.79 8.58 0.09 -5.17 16 21 C 0.43 10.16 9.54 130.42 1.24 11.41 16 22 O -0.40 -6.03 13.62 -62.42 -0.85 -6.88 16 23 N -0.50 -15.70 11.38 -422.78 -4.81 -20.51 16 24 C 0.02 0.78 7.23 39.27 0.28 1.07 16 25 C -0.10 -3.29 8.74 22.61 0.20 -3.10 16 26 C -0.06 -2.21 9.47 22.26 0.21 -2.00 16 27 C -0.19 -8.66 8.61 22.47 0.19 -8.47 16 28 H 0.29 12.22 8.29 -92.71 -0.77 11.45 16 29 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 30 H 0.10 4.65 7.63 -2.91 -0.02 4.63 16 31 H 0.43 9.73 6.83 -92.71 -0.63 9.09 16 32 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.45 0.99 9.06 -74.06 -0.67 0.32 16 35 H 0.12 4.89 6.23 -2.91 -0.02 4.87 16 36 H 0.13 4.05 6.38 -2.91 -0.02 4.03 16 37 H 0.13 5.99 6.13 -2.91 -0.02 5.97 16 Total: -1.00 -69.64 328.92 -0.59 -70.22 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.12 Total: 27.92 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.51 Total: -17.19 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -6.19 Total: -79.22 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.81 Total: -38.45 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -69.64 -0.59 -70.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.539 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds