Wall clock time and date at job start Tue Mar 31 2020 14:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48502 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47008 * 300.00054 * 3 2 1 6 6 H 1.48493 * 109.47076 * 60.00085 * 3 2 1 7 7 C 1.39903 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 175.38981 * 7 2 1 9 9 C 1.41140 * 119.99966 * 355.38053 * 7 2 1 10 10 C 1.40885 * 120.16044 * 214.84929 * 9 7 2 11 11 C 1.36358 * 119.82867 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16931 * 359.97438 * 11 10 9 13 13 N 1.39138 * 119.83738 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99700 * 35.23329 * 13 12 11 15 15 O 1.21630 * 120.00244 * 355.36680 * 14 13 12 16 16 C 1.47224 * 119.99648 * 175.64361 * 14 13 12 17 17 C 1.36801 * 126.94693 * 0.02562 * 16 14 13 18 18 N 1.34667 * 108.38995 * 179.97438 * 17 16 14 19 19 H 0.97001 * 124.84608 * 179.97438 * 18 17 16 20 20 C 1.36446 * 110.29929 * 359.97438 * 18 17 16 21 21 C 1.50707 * 125.56723 * 179.97438 * 20 18 17 22 22 F 1.39899 * 109.46753 * 0.02562 * 21 20 18 23 23 F 1.39898 * 109.47220 * 120.02601 * 21 20 18 24 24 F 1.39903 * 109.47075 * 240.02681 * 21 20 18 25 25 C 1.34481 * 108.86735 * 359.70823 * 20 18 17 26 26 C 1.39514 * 120.32486 * 0.26304 * 12 11 10 27 27 C 1.36365 * 120.16559 * 359.47275 * 26 12 11 28 28 H 0.96998 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.08533 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.91581 * 179.97438 * 11 10 9 31 31 H 0.97001 * 119.99854 * 215.22734 * 13 12 11 32 32 H 1.08006 * 125.80506 * 359.97438 * 17 16 14 33 33 H 1.07996 * 126.83618 * 180.25563 * 25 20 18 34 34 H 1.07995 * 119.91327 * 179.73939 * 26 12 11 35 35 H 1.07999 * 120.08109 * 180.25553 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0856 -1.2131 -0.0757 9 6 1.3058 -2.4320 0.0974 10 6 1.8664 -3.5169 0.7998 11 6 1.1822 -4.6930 0.8897 12 6 -0.0701 -4.8232 0.2888 13 7 -0.7620 -6.0266 0.3844 14 6 -0.6766 -6.7655 1.5082 15 8 0.0703 -6.4240 2.4054 16 6 -1.4830 -7.9894 1.6475 17 6 -2.3586 -8.5058 0.7320 18 7 -2.8907 -9.6329 1.2419 19 1 -3.5423 -10.1918 0.7903 20 6 -2.3822 -9.8765 2.4844 21 6 -2.7413 -11.0457 3.3648 22 9 -3.6811 -11.8501 2.7113 23 9 -1.5922 -11.7965 3.6348 24 9 -3.2842 -10.5759 4.5656 25 6 -1.5038 -8.9060 2.7927 26 6 -0.6294 -3.7548 -0.4127 27 6 0.0407 -2.5708 -0.5065 28 1 -0.4849 0.8401 0.0004 29 1 2.8356 -3.4175 1.2658 30 1 1.6108 -5.5257 1.4274 31 1 -1.3059 -6.3336 -0.3578 32 1 -2.5848 -8.0816 -0.2352 33 1 -0.9306 -8.8170 3.7037 34 1 -1.5974 -3.8643 -0.8788 35 1 -0.3954 -1.7433 -1.0463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341469415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:02 Heat of formation + Delta-G solvation = -115.894494 kcal Electronic energy + Delta-G solvation = -25506.785240 eV Core-core repulsion = 21055.432507 eV Total energy + Delta-G solvation = -4451.352733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.54443 -48.11767 -47.98776 -41.63569 -39.31152 -37.12533 -34.41926 -32.97734 -31.49028 -31.06385 -29.55773 -28.78327 -26.03933 -24.95706 -23.10049 -21.39347 -21.15668 -20.63032 -19.97610 -19.11472 -18.88517 -18.53396 -17.31080 -16.73754 -16.35538 -15.83512 -15.20107 -15.12896 -14.94580 -14.77144 -14.46749 -14.21310 -14.16892 -14.13518 -13.97986 -13.90048 -13.74707 -12.98565 -12.77456 -12.64924 -12.39657 -12.11572 -11.69113 -11.35729 -11.15735 -10.96950 -10.72828 -10.03398 -9.49159 -9.43872 -9.33748 -9.16597 -8.97603 -8.86604 -7.53520 -6.84272 -6.60984 -4.33092 1.35417 1.72368 1.99215 2.63288 2.72200 3.09863 3.10321 3.15407 3.18183 3.31095 3.74739 3.76832 3.84968 3.99395 4.00956 4.51201 4.70992 4.77169 5.04195 5.45123 5.53263 5.68102 6.11323 6.19945 6.27563 6.47954 6.75554 6.79279 6.95056 7.08447 7.22280 7.31455 7.65486 7.76605 7.89850 8.08231 8.27509 8.33436 8.64062 8.78396 8.94046 9.01700 10.30034 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.002157 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.682878 B =12978.238226 C =13191.875801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.085 4.085 12 C 0.005 3.995 13 N -0.647 5.647 14 C 0.572 3.428 15 O -0.528 6.528 16 C -0.214 4.214 17 C 0.081 3.919 18 N -0.530 5.530 19 H 0.423 0.577 20 C -0.103 4.103 21 C 0.545 3.455 22 F -0.183 7.183 23 F -0.167 7.167 24 F -0.167 7.167 25 C -0.057 4.057 26 C -0.121 4.121 27 C -0.142 4.142 28 H 0.277 0.723 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.392 0.608 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.091 0.909 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 -18.874 -0.024 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.105 4.105 12 C -0.087 4.087 13 N -0.289 5.289 14 C 0.359 3.641 15 O -0.406 6.406 16 C -0.224 4.224 17 C -0.057 4.057 18 N -0.125 5.125 19 H 0.261 0.739 20 C -0.213 4.213 21 C 0.490 3.510 22 F -0.164 7.164 23 F -0.148 7.148 24 F -0.148 7.148 25 C -0.083 4.083 26 C -0.141 4.141 27 C -0.162 4.162 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.226 0.774 32 H 0.204 0.796 33 H 0.180 0.820 34 H 0.109 0.891 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.986 -18.604 0.626 20.670 hybrid contribution -0.497 0.185 -0.355 0.638 sum -9.482 -18.419 0.271 20.718 Atomic orbital electron populations 1.69773 1.07272 1.28563 1.38333 1.25882 0.94946 1.01172 0.92592 0.86149 0.80608 0.80868 0.78364 1.18589 1.20040 1.19997 1.19535 0.94786 0.90214 1.44542 0.90564 1.17739 0.92305 0.92026 0.88260 1.20821 1.01236 0.94973 1.05461 1.20433 0.92727 0.97917 0.99396 1.17237 0.94155 0.85715 1.11616 1.42769 1.48841 1.21416 1.15914 1.17233 0.82208 0.82323 0.82297 1.90781 1.38694 1.70613 1.40481 1.20671 1.05322 0.99811 0.96551 1.22224 0.96315 0.87582 0.99573 1.41160 1.35962 1.21998 1.13406 0.73854 1.19758 1.08984 1.01668 0.90850 1.17241 0.74431 0.80789 0.78556 1.93174 1.66423 1.75739 1.81091 1.93261 1.49816 1.77594 1.94143 1.93265 1.85966 1.88351 1.47199 1.21879 0.96279 0.91136 0.99044 1.20305 0.98292 0.93150 1.02344 1.21190 0.97293 0.95545 1.02165 0.91232 0.88558 0.87309 0.77448 0.79562 0.82018 0.89120 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.02 10.59 55.55 0.59 -20.44 16 2 C 0.07 1.74 5.42 -17.33 -0.09 1.64 16 3 Si 0.92 18.97 29.56 -169.99 -5.03 13.95 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.46 -12.22 9.02 -37.86 -0.34 -12.57 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.17 9.74 -39.26 -0.38 -5.56 16 11 C -0.08 -2.02 8.61 -39.78 -0.34 -2.36 16 12 C 0.01 0.11 6.31 -83.59 -0.53 -0.42 16 13 N -0.65 -10.90 5.29 -10.76 -0.06 -10.96 16 14 C 0.57 9.99 7.64 -12.61 -0.10 9.90 16 15 O -0.53 -11.58 14.37 5.25 0.08 -11.50 16 16 C -0.21 -2.76 6.29 -103.35 -0.65 -3.41 16 17 C 0.08 0.68 11.41 -16.83 -0.19 0.48 16 18 N -0.53 -3.86 5.80 -9.11 -0.05 -3.91 16 19 H 0.42 1.72 8.65 -40.82 -0.35 1.36 16 20 C -0.10 -1.01 6.40 -81.86 -0.52 -1.53 16 21 C 0.54 4.98 3.47 36.01 0.12 5.11 16 22 F -0.18 -1.49 16.91 2.25 0.04 -1.45 16 23 F -0.17 -1.65 17.30 2.25 0.04 -1.61 16 24 F -0.17 -1.67 17.30 2.25 0.04 -1.63 16 25 C -0.06 -0.70 10.86 -37.49 -0.41 -1.10 16 26 C -0.12 -2.68 9.90 -39.78 -0.39 -3.08 16 27 C -0.14 -3.60 8.61 -39.26 -0.34 -3.94 16 28 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 29 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.11 2.57 6.20 -52.49 -0.33 2.25 16 31 H 0.39 4.83 7.77 -40.82 -0.32 4.51 16 32 H 0.19 0.84 7.46 -52.48 -0.39 0.45 16 33 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -31.91 324.20 -6.75 -38.66 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.52 Total: 8.78 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -4.76 Total: -14.78 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.48 Total: -35.30 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.12 Total: -4.69 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.91 -6.75 -38.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341469415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.232 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds