Wall clock time and date at job start Tue Mar 31 2020 14:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48502 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47008 * 300.00054 * 3 2 1 6 6 H 1.48493 * 109.47076 * 60.00085 * 3 2 1 7 7 C 1.39903 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 175.38981 * 7 2 1 9 9 C 1.41140 * 119.99966 * 355.38053 * 7 2 1 10 10 C 1.40885 * 120.16044 * 214.84929 * 9 7 2 11 11 C 1.36358 * 119.82867 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16931 * 359.97438 * 11 10 9 13 13 N 1.39138 * 119.83738 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99700 * 35.23329 * 13 12 11 15 15 O 1.21630 * 120.00244 * 355.36680 * 14 13 12 16 16 C 1.47224 * 119.99648 * 175.64361 * 14 13 12 17 17 C 1.36801 * 126.94693 * 0.02562 * 16 14 13 18 18 N 1.34667 * 108.38995 * 179.97438 * 17 16 14 19 19 H 0.97001 * 124.84608 * 179.97438 * 18 17 16 20 20 C 1.36446 * 110.29929 * 359.97438 * 18 17 16 21 21 C 1.50707 * 125.56723 * 179.97438 * 20 18 17 22 22 F 1.39899 * 109.46753 * 0.02562 * 21 20 18 23 23 F 1.39898 * 109.47220 * 120.02601 * 21 20 18 24 24 F 1.39903 * 109.47075 * 240.02681 * 21 20 18 25 25 C 1.34481 * 108.86735 * 359.70823 * 20 18 17 26 26 C 1.39514 * 120.32486 * 0.26304 * 12 11 10 27 27 C 1.36365 * 120.16559 * 359.47275 * 26 12 11 28 28 H 0.96998 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.08533 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.91581 * 179.97438 * 11 10 9 31 31 H 0.97001 * 119.99854 * 215.22734 * 13 12 11 32 32 H 1.08006 * 125.80506 * 359.97438 * 17 16 14 33 33 H 1.07996 * 126.83618 * 180.25563 * 25 20 18 34 34 H 1.07995 * 119.91327 * 179.73939 * 26 12 11 35 35 H 1.07999 * 120.08109 * 180.25553 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0856 -1.2131 -0.0757 9 6 1.3058 -2.4320 0.0974 10 6 1.8664 -3.5169 0.7998 11 6 1.1822 -4.6930 0.8897 12 6 -0.0701 -4.8232 0.2888 13 7 -0.7620 -6.0266 0.3844 14 6 -0.6766 -6.7655 1.5082 15 8 0.0703 -6.4240 2.4054 16 6 -1.4830 -7.9894 1.6475 17 6 -2.3586 -8.5058 0.7320 18 7 -2.8907 -9.6329 1.2419 19 1 -3.5423 -10.1918 0.7903 20 6 -2.3822 -9.8765 2.4844 21 6 -2.7413 -11.0457 3.3648 22 9 -3.6811 -11.8501 2.7113 23 9 -1.5922 -11.7965 3.6348 24 9 -3.2842 -10.5759 4.5656 25 6 -1.5038 -8.9060 2.7927 26 6 -0.6294 -3.7548 -0.4127 27 6 0.0407 -2.5708 -0.5065 28 1 -0.4849 0.8401 0.0004 29 1 2.8356 -3.4175 1.2658 30 1 1.6108 -5.5257 1.4274 31 1 -1.3059 -6.3336 -0.3578 32 1 -2.5848 -8.0816 -0.2352 33 1 -0.9306 -8.8170 3.7037 34 1 -1.5974 -3.8643 -0.8788 35 1 -0.3954 -1.7433 -1.0463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341469415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:02 Heat of formation + Delta-G solvation = -135.738717 kcal Electronic energy + Delta-G solvation = -25507.645750 eV Core-core repulsion = 21055.432507 eV Total energy + Delta-G solvation = -4452.213243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.28416 -48.83089 -48.75947 -42.47354 -40.81741 -38.88007 -36.11532 -34.71865 -32.42741 -31.98239 -31.41058 -30.51430 -27.28555 -26.27183 -24.41070 -23.12983 -22.36422 -21.88184 -20.90408 -20.35113 -19.63320 -19.33497 -19.21135 -18.13862 -17.45224 -17.08161 -16.81608 -16.24772 -15.75584 -15.68319 -15.61029 -15.22051 -15.19566 -15.18047 -14.94421 -14.91987 -14.77746 -14.64952 -14.42818 -13.95765 -13.63192 -13.54581 -13.28675 -13.13471 -12.84408 -12.74470 -12.46388 -11.77111 -11.35672 -11.20091 -10.85165 -10.58425 -10.17744 -9.83287 -9.42750 -8.67637 -8.48048 -6.30160 0.51723 0.68810 1.00955 1.18841 1.24087 1.41063 1.50431 1.56283 1.93874 2.25709 2.34763 2.48466 2.71170 2.85457 3.06580 3.25300 3.70052 3.79620 3.95679 4.21212 4.40978 4.49025 4.61682 4.71065 4.98289 5.16669 5.18404 5.25296 5.38246 5.43345 5.47979 5.73781 5.95616 6.06483 6.17579 6.24160 6.43078 6.71314 6.80973 6.99759 7.03519 7.46815 8.44587 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.002157 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.682878 B =12978.238226 C =13191.875801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.027 3.973 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.497 4.497 8 H 0.070 0.930 9 C 0.066 3.934 10 C -0.222 4.222 11 C -0.099 4.099 12 C 0.025 3.975 13 N -0.637 5.637 14 C 0.573 3.427 15 O -0.584 6.584 16 C -0.258 4.258 17 C 0.129 3.871 18 N -0.509 5.509 19 H 0.444 0.556 20 C -0.097 4.097 21 C 0.551 3.449 22 F -0.173 7.173 23 F -0.172 7.172 24 F -0.173 7.173 25 C -0.080 4.080 26 C -0.116 4.116 27 C -0.159 4.159 28 H 0.284 0.716 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.419 0.581 32 H 0.236 0.764 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 -20.260 -1.464 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.528 4.528 8 H 0.089 0.911 9 C 0.064 3.936 10 C -0.242 4.242 11 C -0.119 4.119 12 C -0.069 4.069 13 N -0.281 5.281 14 C 0.364 3.636 15 O -0.465 6.465 16 C -0.267 4.267 17 C -0.012 4.012 18 N -0.105 5.105 19 H 0.287 0.713 20 C -0.207 4.207 21 C 0.496 3.504 22 F -0.154 7.154 23 F -0.153 7.153 24 F -0.154 7.154 25 C -0.106 4.106 26 C -0.136 4.136 27 C -0.180 4.180 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.252 0.748 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.303 -20.067 -0.848 23.047 hybrid contribution 0.092 0.368 0.117 0.397 sum -11.211 -19.699 -0.732 22.678 Atomic orbital electron populations 1.69826 1.08474 1.29829 1.38762 1.26712 0.95837 1.04208 0.91664 0.85071 0.79028 0.76246 0.78778 1.18552 1.18651 1.19525 1.19732 0.94780 0.91401 1.46917 0.91134 1.18043 0.93518 0.92600 0.89468 1.20930 1.01582 0.95640 1.06039 1.20545 0.93944 0.97374 1.00028 1.17283 0.93242 0.87363 1.09020 1.42592 1.48652 1.19769 1.17104 1.17846 0.81446 0.83009 0.81267 1.90754 1.41186 1.72195 1.42321 1.20216 1.08133 0.99408 0.98972 1.22778 0.92734 0.86088 0.99593 1.41198 1.35325 1.21663 1.12335 0.71336 1.19637 1.08300 1.01064 0.91696 1.17102 0.74391 0.80650 0.78274 1.93196 1.65976 1.75419 1.80809 1.93255 1.50209 1.77691 1.94171 1.93257 1.86033 1.88457 1.47649 1.21880 0.97413 0.92283 0.99065 1.20575 0.99392 0.91866 1.01740 1.21192 0.97373 0.96600 1.02794 0.90513 0.88866 0.87613 0.74342 0.74803 0.83415 0.85166 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.31 10.59 21.82 0.23 -44.08 16 2 C 0.03 1.41 5.42 85.24 0.46 1.88 16 3 Si 0.99 39.40 29.56 68.60 2.03 41.43 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.50 -27.54 9.02 23.39 0.21 -27.33 16 8 H 0.07 3.81 7.85 -2.91 -0.02 3.78 16 9 C 0.07 3.66 5.55 -21.27 -0.12 3.54 16 10 C -0.22 -11.72 9.74 22.48 0.22 -11.50 16 11 C -0.10 -4.82 8.61 22.14 0.19 -4.63 16 12 C 0.02 1.05 6.31 38.60 0.24 1.29 16 13 N -0.64 -20.00 5.29 -306.22 -1.62 -21.62 16 14 C 0.57 19.50 7.64 86.60 0.66 20.16 16 15 O -0.58 -26.19 14.37 -4.13 -0.06 -26.25 16 16 C -0.26 -6.10 6.29 -19.04 -0.12 -6.22 16 17 C 0.13 1.53 11.41 83.92 0.96 2.48 16 18 N -0.51 -5.13 5.80 -182.72 -1.06 -6.19 16 19 H 0.44 1.22 8.65 -92.71 -0.80 0.41 16 20 C -0.10 -1.65 6.40 40.98 0.26 -1.39 16 21 C 0.55 8.95 3.47 71.24 0.25 9.20 16 22 F -0.17 -2.30 16.91 44.97 0.76 -1.53 16 23 F -0.17 -3.16 17.30 44.97 0.78 -2.38 16 24 F -0.17 -3.23 17.30 44.97 0.78 -2.45 16 25 C -0.08 -1.88 10.86 23.62 0.26 -1.63 16 26 C -0.12 -5.01 9.90 22.14 0.22 -4.79 16 27 C -0.16 -8.22 8.61 22.48 0.19 -8.03 16 28 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 29 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 30 H 0.11 5.19 6.20 -2.91 -0.02 5.17 16 31 H 0.42 8.52 7.77 -92.71 -0.72 7.80 16 32 H 0.24 0.45 7.46 -2.91 -0.02 0.42 16 33 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 34 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.12 6.41 6.13 -2.91 -0.02 6.40 16 Total: -1.00 -74.20 324.20 5.40 -68.79 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.32 Total: 21.25 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.89 Total: -26.97 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -2.45 Total: -71.89 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 2.32 Total: -6.37 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -74.20 5.40 -68.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341469415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.945 kcal (2) G-P(sol) polarization free energy of solvation -74.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds