Wall clock time and date at job start Tue Mar 31 2020 14:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39945 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00388 * 341.71916 * 7 2 1 9 9 C 1.41392 * 120.00071 * 161.71500 * 7 2 1 10 10 C 1.40716 * 120.24802 * 330.23912 * 9 7 2 11 11 C 1.37610 * 119.74899 * 179.69783 * 10 9 7 12 12 C 1.38632 * 120.24865 * 0.27687 * 11 10 9 13 13 C 1.50706 * 119.74902 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47193 * 89.99972 * 13 12 11 15 15 N 1.28387 * 119.16884 * 269.99857 * 14 13 12 16 16 C 1.30407 * 122.45102 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.77016 * 179.97438 * 16 15 14 18 18 F 1.39896 * 109.46960 * 359.97438 * 17 16 15 19 19 F 1.39902 * 109.47171 * 119.99512 * 17 16 15 20 20 F 1.39896 * 109.47165 * 239.99394 * 17 16 15 21 21 C 1.40477 * 120.46148 * 359.97438 * 16 15 14 22 22 C 1.36601 * 118.31921 * 0.02562 * 21 16 15 23 23 C 1.34671 * 119.17008 * 89.73112 * 14 13 12 24 24 O 1.22060 * 120.34921 * 0.02562 * 23 14 13 25 25 C 1.38636 * 120.50095 * 359.97438 * 12 11 10 26 26 C 1.37614 * 120.24893 * 359.97438 * 25 12 11 27 27 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.11915 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.87748 * 180.30093 * 11 10 9 30 30 H 1.09001 * 109.46772 * 210.00435 * 13 12 11 31 31 H 1.09000 * 109.46651 * 329.99885 * 13 12 11 32 32 H 1.08000 * 120.83502 * 179.97438 * 21 16 15 33 33 H 1.07996 * 121.09453 * 179.97438 * 22 21 16 34 34 H 1.08002 * 119.87220 * 179.97438 * 25 12 11 35 35 H 1.07997 * 120.12752 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2924 9 6 3.3682 -1.2428 -0.3847 10 6 3.8633 -0.3107 -1.3154 11 6 5.1905 -0.3461 -1.6773 12 6 6.0376 -1.2990 -1.1330 13 6 7.4890 -1.3279 -1.5378 14 7 8.2650 -0.4747 -0.6345 15 7 8.4245 0.7650 -0.9277 16 6 9.1022 1.5817 -0.1698 17 6 9.2519 3.0261 -0.5726 18 9 8.5839 3.2444 -1.7823 19 9 8.7022 3.8461 0.4187 20 9 10.6088 3.3285 -0.7285 21 6 9.6938 1.1244 1.0194 22 6 9.5399 -0.1906 1.3558 23 6 8.7884 -1.0093 0.4853 24 8 8.6181 -2.1902 0.7429 25 6 5.5597 -2.2256 -0.2193 26 6 4.2364 -2.2083 0.1580 27 1 -0.4850 0.8401 -0.0004 28 1 3.2050 0.4326 -1.7406 29 1 5.5737 0.3715 -2.3877 30 1 7.8616 -2.3507 -1.4813 31 1 7.5886 -0.9609 -2.5593 32 1 10.2567 1.7954 1.6513 33 1 9.9759 -0.5899 2.2595 34 1 6.2285 -2.9638 0.1981 35 1 3.8663 -2.9307 0.8703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342513590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:53 Heat of formation + Delta-G solvation = -114.941183 kcal Electronic energy + Delta-G solvation = -27020.825074 eV Core-core repulsion = 22569.513679 eV Total energy + Delta-G solvation = -4451.311395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.22282 -48.72980 -48.70085 -43.33380 -39.80871 -39.10251 -36.70132 -35.51412 -33.30036 -32.69829 -31.61073 -29.91487 -27.82238 -26.20870 -24.90944 -24.45600 -23.38585 -22.07594 -20.31525 -19.84862 -19.62823 -19.44883 -18.77368 -18.05624 -18.00293 -17.44422 -17.10091 -16.04343 -15.79841 -15.65695 -15.56565 -15.50198 -15.19448 -15.11463 -14.85700 -14.82485 -14.78964 -14.74245 -14.41138 -14.19904 -13.95807 -13.63505 -13.41919 -13.27533 -12.78322 -12.69192 -12.51662 -12.19069 -12.00772 -11.56988 -11.45908 -11.12921 -10.98561 -9.87036 -9.62859 -9.54149 -9.00581 -6.61343 -0.66735 0.09388 0.36611 0.79460 0.92131 1.20506 1.33647 1.41120 1.61212 2.04274 2.09600 2.43575 2.51605 2.75236 3.19066 3.27238 3.40899 3.54163 3.67729 3.98314 4.02742 4.27324 4.33962 4.41095 4.42955 4.59689 4.66420 4.73771 4.84825 4.92376 4.98562 5.21926 5.50257 5.61738 5.80503 5.89433 6.14829 6.28812 6.33536 6.63069 6.72033 6.78013 8.07506 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.004560 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.385278 B = 6138.445670 C = 7434.870479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.053 3.947 3 Si 0.964 3.036 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.481 4.481 8 H 0.059 0.941 9 C 0.085 3.915 10 C -0.256 4.256 11 C -0.047 4.047 12 C -0.238 4.238 13 C 0.170 3.830 14 N -0.322 5.322 15 N -0.170 5.170 16 C -0.049 4.049 17 C 0.552 3.448 18 F -0.170 7.170 19 F -0.165 7.165 20 F -0.158 7.158 21 C -0.035 4.035 22 C -0.180 4.180 23 C 0.465 3.535 24 O -0.549 6.549 25 C -0.052 4.052 26 C -0.231 4.231 27 H 0.297 0.703 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.203 0.797 33 H 0.198 0.802 34 H 0.115 0.885 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.931 8.326 -0.408 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.164 4.164 3 Si 0.787 3.213 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.510 4.510 8 H 0.077 0.923 9 C 0.082 3.918 10 C -0.275 4.275 11 C -0.066 4.066 12 C -0.241 4.241 13 C 0.053 3.947 14 N -0.143 5.143 15 N 0.003 4.997 16 C -0.220 4.220 17 C 0.496 3.504 18 F -0.152 7.152 19 F -0.146 7.146 20 F -0.140 7.140 21 C -0.057 4.057 22 C -0.209 4.209 23 C 0.265 3.735 24 O -0.428 6.428 25 C -0.071 4.071 26 C -0.250 4.250 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.220 0.780 33 H 0.215 0.785 34 H 0.133 0.867 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.050 7.635 -1.060 22.417 hybrid contribution -0.318 0.321 0.774 0.896 sum 20.733 7.956 -0.285 22.209 Atomic orbital electron populations 1.69707 1.09096 1.31773 1.35825 1.26794 0.95309 1.04064 0.90203 0.85517 0.79261 0.76701 0.79816 1.17793 1.19937 1.18564 1.19569 0.94549 0.95812 1.41058 0.92266 1.17926 0.92535 0.91756 0.89601 1.21129 0.96896 1.04964 1.04501 1.20819 0.92418 0.96084 0.97246 1.19377 0.94634 1.02627 1.07415 1.20905 0.86544 0.94368 0.92888 1.47472 1.41041 1.04597 1.21220 1.70464 1.08834 0.93176 1.27216 1.21772 1.06761 0.94764 0.98656 1.17068 0.74505 0.83969 0.74904 1.93244 1.80640 1.95406 1.45870 1.93267 1.85635 1.74108 1.61628 1.93262 1.31496 1.93824 1.95372 1.22248 0.93779 0.96712 0.92938 1.22964 1.01714 0.93649 1.02607 1.18764 0.82196 0.89923 0.82620 1.90975 1.61724 1.16918 1.73197 1.20855 0.94479 0.96932 0.94795 1.21177 0.94038 1.04301 1.05495 0.89240 0.88189 0.85400 0.86745 0.85625 0.77977 0.78463 0.86674 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.55 13.93 21.83 0.30 -45.24 16 2 C 0.05 2.81 5.40 85.26 0.46 3.27 16 3 Si 0.96 42.91 24.52 68.60 1.68 44.59 16 4 H -0.25 -10.54 6.71 99.48 0.67 -9.87 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -12.15 6.86 99.48 0.68 -11.47 16 7 C -0.48 -27.12 9.57 23.46 0.22 -26.90 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 C 0.08 4.36 5.11 -21.29 -0.11 4.25 16 10 C -0.26 -11.99 7.18 22.73 0.16 -11.82 16 11 C -0.05 -1.87 9.67 22.22 0.21 -1.66 16 12 C -0.24 -8.89 5.48 -19.67 -0.11 -9.00 16 13 C 0.17 4.88 5.67 85.64 0.49 5.37 16 14 N -0.32 -9.15 3.20 -476.15 -1.53 -10.67 16 15 N -0.17 -4.43 10.27 -47.21 -0.48 -4.91 16 16 C -0.05 -1.01 6.35 43.31 0.27 -0.73 16 17 C 0.55 10.35 3.32 71.23 0.24 10.59 16 18 F -0.17 -3.82 16.85 44.97 0.76 -3.07 16 19 F -0.17 -3.12 17.24 44.97 0.78 -2.34 16 20 F -0.16 -2.50 17.24 44.97 0.78 -1.72 16 21 C -0.03 -0.52 9.74 22.43 0.22 -0.31 16 22 C -0.18 -3.46 10.13 22.61 0.23 -3.23 16 23 C 0.46 13.28 7.47 84.98 0.63 13.91 16 24 O -0.55 -19.02 15.98 -5.51 -0.09 -19.10 16 25 C -0.05 -2.16 9.62 22.22 0.21 -1.94 16 26 C -0.23 -10.99 9.80 22.73 0.22 -10.77 16 27 H 0.30 14.39 8.30 -92.71 -0.77 13.62 16 28 H 0.10 4.67 4.73 -2.91 -0.01 4.66 16 29 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.11 3.13 7.32 -2.39 -0.02 3.11 16 31 H 0.13 2.93 8.08 -2.39 -0.02 2.91 16 32 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.12 4.50 7.43 -2.91 -0.02 4.48 16 35 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -65.06 320.54 6.66 -58.40 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.10 Total: 13.05 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.36 Total: -28.97 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -1.71 Total: -60.83 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.09 Total: -19.10 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 2.31 Total: -7.13 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.68 Total: 44.59 kcal Total: -65.06 6.66 -58.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342513590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.542 kcal (2) G-P(sol) polarization free energy of solvation -65.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds