Wall clock time and date at job start Tue Mar 31 2020 14:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86804 * 120.00268 * 2 1 4 4 H 1.48500 * 109.47167 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.46690 * 29.99536 * 3 2 1 6 6 H 1.48499 * 109.47126 * 149.99670 * 3 2 1 7 7 C 1.39913 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00383 * 175.59126 * 7 2 1 9 9 C 1.41137 * 119.99763 * 355.58889 * 7 2 1 10 10 C 1.40875 * 120.16081 * 214.77101 * 9 7 2 11 11 C 1.36366 * 119.82959 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16428 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83172 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00332 * 35.32570 * 13 12 11 15 15 O 1.21582 * 119.99807 * 355.70549 * 14 13 12 16 16 C 1.47655 * 120.00331 * 175.70707 * 14 13 12 17 17 C 1.40019 * 119.96925 * 0.02562 * 16 14 13 18 18 C 1.36588 * 120.46399 * 179.69794 * 17 16 14 19 19 C 1.38813 * 120.20767 * 359.97438 * 18 17 16 20 20 O 1.35185 * 133.64438 * 179.97438 * 19 18 17 21 21 C 1.34392 * 108.24591 * 180.02562 * 20 19 18 22 22 O 1.35182 * 124.90649 * 179.97438 * 21 20 19 23 23 N 1.30590 * 110.18493 * 0.02562 * 21 20 19 24 24 C 1.36225 * 108.67640 * 359.97438 * 23 21 20 25 25 C 1.39206 * 133.66208 * 179.97438 * 24 23 21 26 26 C 1.39503 * 120.32885 * 0.25669 * 12 11 10 27 27 C 1.36364 * 120.16811 * 359.47912 * 26 12 11 28 28 H 0.97004 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.08865 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.91942 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00092 * 215.31777 * 13 12 11 32 32 H 1.08006 * 119.76554 * 359.72054 * 17 16 14 33 33 H 1.07996 * 119.89976 * 180.02562 * 18 17 16 34 34 H 0.96700 * 114.00140 * 269.99945 * 22 21 20 35 35 H 1.08002 * 120.26946 * 0.06130 * 25 24 23 36 36 H 1.08005 * 119.91339 * 179.74485 * 26 12 11 37 37 H 1.08003 * 120.08246 * 180.25360 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6526 0.6999 6 1 3.5402 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0859 -1.2131 -0.0714 9 6 1.3057 -2.4321 0.0951 10 6 1.8648 -3.5181 0.7968 11 6 1.1804 -4.6944 0.8835 12 6 -0.0703 -4.8239 0.2790 13 7 -0.7624 -6.0273 0.3713 14 6 -0.6816 -6.7667 1.4953 15 8 0.0567 -6.4222 2.3978 16 6 -1.4896 -7.9951 1.6306 17 6 -2.3392 -8.3916 0.5906 18 6 -3.0865 -9.5294 0.7025 19 6 -3.0098 -10.3052 1.8511 20 8 -3.6094 -11.4511 2.2448 21 6 -3.1591 -11.7613 3.4724 22 8 -3.5405 -12.8447 4.1854 23 7 -2.3008 -10.8644 3.8775 24 6 -2.1624 -9.9218 2.9038 25 6 -1.4010 -8.7620 2.7901 26 6 -0.6277 -3.7547 -0.4226 27 6 0.0426 -2.5706 -0.5132 28 1 -0.4850 0.8401 -0.0004 29 1 2.8331 -3.4195 1.2650 30 1 1.6078 -5.5280 1.4208 31 1 -1.3031 -6.3341 -0.3732 32 1 -2.4037 -7.7937 -0.3065 33 1 -3.7385 -9.8269 -0.1054 34 1 -4.3089 -12.6920 4.7522 35 1 -0.7465 -8.4595 3.5941 36 1 -1.5945 -3.8636 -0.8915 37 1 -0.3921 -1.7424 -1.0532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345214504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:56 Heat of formation + Delta-G solvation = 0.520208 kcal Electronic energy + Delta-G solvation = -24919.223401 eV Core-core repulsion = 21014.775528 eV Total energy + Delta-G solvation = -3904.447873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.65265 -40.13718 -38.66273 -37.85532 -36.99330 -35.08859 -34.54574 -33.00376 -31.18206 -30.06206 -29.56599 -28.69511 -25.57304 -24.13950 -23.64561 -22.33435 -21.77531 -20.98214 -20.28165 -19.66894 -18.34623 -17.92994 -17.62957 -17.31776 -16.62876 -15.84901 -15.43293 -15.22637 -14.82766 -14.69746 -14.51373 -14.04469 -13.91262 -13.43342 -13.10441 -12.99372 -12.67468 -12.62042 -12.15961 -11.82407 -11.75819 -11.71338 -11.39628 -11.18138 -11.03808 -10.89274 -10.75831 -10.11044 -9.56477 -9.50751 -9.24322 -9.13607 -8.94041 -8.89316 -7.58495 -6.90887 -6.65213 -4.37339 0.22931 0.47013 1.44798 1.88603 2.51419 2.88719 2.95150 3.06029 3.08469 3.11583 3.19304 3.52475 3.72212 3.95980 4.04156 4.50171 4.59644 4.64493 4.65567 4.72416 4.98659 5.24366 5.59364 5.61776 5.64337 5.82767 5.88090 6.09834 6.16053 6.41277 6.56110 6.68431 6.87301 7.03183 7.07797 7.15836 7.25765 7.60371 7.68385 7.81283 8.02721 8.18300 8.27920 8.56137 8.65058 8.89464 8.95759 10.25693 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.042398 B = 0.002104 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.250259 B =13301.872044 C =13606.230876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.083 4.083 12 C -0.001 4.001 13 N -0.640 5.640 14 C 0.543 3.457 15 O -0.521 6.521 16 C -0.119 4.119 17 C -0.061 4.061 18 C -0.093 4.093 19 C 0.035 3.965 20 O -0.225 6.225 21 C 0.414 3.586 22 O -0.407 6.407 23 N -0.454 5.454 24 C 0.022 3.978 25 C 0.004 3.996 26 C -0.118 4.118 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.395 0.605 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.420 0.580 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 -17.976 0.880 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.093 4.093 13 N -0.283 5.283 14 C 0.330 3.670 15 O -0.399 6.399 16 C -0.124 4.124 17 C -0.080 4.080 18 C -0.112 4.112 19 C -0.016 4.016 20 O -0.118 6.118 21 C 0.164 3.836 22 O -0.215 6.215 23 N -0.197 5.197 24 C -0.090 4.090 25 C -0.015 4.015 26 C -0.138 4.138 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.230 0.770 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.281 0.719 35 H 0.172 0.828 36 H 0.110 0.890 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.482 -17.918 1.850 20.357 hybrid contribution -0.985 0.483 -0.512 1.211 sum -10.467 -17.436 1.338 20.380 Atomic orbital electron populations 1.69755 1.07301 1.28782 1.37882 1.25895 0.94961 1.01230 0.92536 0.86185 0.80266 0.80419 0.79055 1.19512 1.20289 1.18690 1.19516 0.94786 0.90207 1.44439 0.90538 1.17747 0.92279 0.92014 0.88112 1.20815 1.01301 0.94912 1.05541 1.20416 0.92695 0.97888 0.99268 1.17222 0.94344 0.85622 1.12144 1.42834 1.48484 1.21251 1.15713 1.17940 0.82972 0.83339 0.82796 1.90796 1.38760 1.70385 1.39917 1.19963 1.00153 0.97134 0.95119 1.20957 0.93582 0.94996 0.98456 1.19510 1.02622 0.94149 0.94940 1.20214 0.97182 0.85980 0.98193 1.84463 1.57826 1.36737 1.32820 1.22435 0.91680 0.88351 0.81157 1.84921 1.53066 1.26727 1.56802 1.71101 1.18340 1.02378 1.27881 1.19452 1.01221 0.97316 0.91038 1.20436 0.94796 0.88952 0.97345 1.20306 0.98326 0.93082 1.02079 1.21194 0.97311 0.95562 1.02146 0.91089 0.88492 0.87356 0.77017 0.83459 0.83815 0.71891 0.82760 0.88995 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.73 10.60 55.55 0.59 -20.14 16 2 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 3 Si 0.92 18.76 29.56 -169.99 -5.03 13.74 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.05 9.02 -37.86 -0.34 -12.39 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.08 -1.94 8.61 -39.78 -0.34 -2.28 16 12 C 0.00 -0.02 6.30 -83.60 -0.53 -0.55 16 13 N -0.64 -10.59 5.25 -10.65 -0.06 -10.65 16 14 C 0.54 9.20 7.59 -12.41 -0.09 9.10 16 15 O -0.52 -10.96 13.75 5.29 0.07 -10.89 16 16 C -0.12 -1.54 5.87 -104.99 -0.62 -2.16 16 17 C -0.06 -0.58 9.47 -39.51 -0.37 -0.95 16 18 C -0.09 -0.82 9.99 -39.96 -0.40 -1.22 16 19 C 0.03 0.38 7.42 -38.53 -0.29 0.10 16 20 O -0.22 -2.37 10.78 -20.31 -0.22 -2.58 16 21 C 0.41 4.20 9.53 52.23 0.50 4.70 16 22 O -0.41 -2.65 13.62 -40.53 -0.55 -3.20 16 23 N -0.45 -5.75 11.38 -12.82 -0.15 -5.90 16 24 C 0.02 0.27 7.22 -84.71 -0.61 -0.34 16 25 C 0.00 0.06 9.64 -38.83 -0.37 -0.32 16 26 C -0.12 -2.58 9.90 -39.79 -0.39 -2.97 16 27 C -0.14 -3.56 8.61 -39.26 -0.34 -3.90 16 28 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 29 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.11 2.50 6.22 -52.49 -0.33 2.17 16 31 H 0.39 4.84 6.83 -40.82 -0.28 4.56 16 32 H 0.15 0.97 6.38 -52.48 -0.33 0.63 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.42 0.14 9.06 45.56 0.41 0.56 16 35 H 0.15 2.15 7.64 -52.49 -0.40 1.75 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.13 3.41 6.14 -52.48 -0.32 3.09 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -33.06 328.74 -7.72 -40.78 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -2.06 Total: 8.86 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -5.27 Total: -14.98 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.39 Total: -36.68 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.70 Total: -16.67 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.06 -7.72 -40.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345214504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.298 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds