Wall clock time and date at job start Tue Mar 31 2020 14:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86804 * 120.00268 * 2 1 4 4 H 1.48500 * 109.47167 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.46690 * 29.99536 * 3 2 1 6 6 H 1.48499 * 109.47126 * 149.99670 * 3 2 1 7 7 C 1.39913 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00383 * 175.59126 * 7 2 1 9 9 C 1.41137 * 119.99763 * 355.58889 * 7 2 1 10 10 C 1.40875 * 120.16081 * 214.77101 * 9 7 2 11 11 C 1.36366 * 119.82959 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16428 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83172 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00332 * 35.32570 * 13 12 11 15 15 O 1.21582 * 119.99807 * 355.70549 * 14 13 12 16 16 C 1.47655 * 120.00331 * 175.70707 * 14 13 12 17 17 C 1.40019 * 119.96925 * 0.02562 * 16 14 13 18 18 C 1.36588 * 120.46399 * 179.69794 * 17 16 14 19 19 C 1.38813 * 120.20767 * 359.97438 * 18 17 16 20 20 O 1.35185 * 133.64438 * 179.97438 * 19 18 17 21 21 C 1.34392 * 108.24591 * 180.02562 * 20 19 18 22 22 O 1.35182 * 124.90649 * 179.97438 * 21 20 19 23 23 N 1.30590 * 110.18493 * 0.02562 * 21 20 19 24 24 C 1.36225 * 108.67640 * 359.97438 * 23 21 20 25 25 C 1.39206 * 133.66208 * 179.97438 * 24 23 21 26 26 C 1.39503 * 120.32885 * 0.25669 * 12 11 10 27 27 C 1.36364 * 120.16811 * 359.47912 * 26 12 11 28 28 H 0.97004 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.08865 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.91942 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00092 * 215.31777 * 13 12 11 32 32 H 1.08006 * 119.76554 * 359.72054 * 17 16 14 33 33 H 1.07996 * 119.89976 * 180.02562 * 18 17 16 34 34 H 0.96700 * 114.00140 * 269.99945 * 22 21 20 35 35 H 1.08002 * 120.26946 * 0.06130 * 25 24 23 36 36 H 1.08005 * 119.91339 * 179.74485 * 26 12 11 37 37 H 1.08003 * 120.08246 * 180.25360 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6526 0.6999 6 1 3.5402 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0859 -1.2131 -0.0714 9 6 1.3057 -2.4321 0.0951 10 6 1.8648 -3.5181 0.7968 11 6 1.1804 -4.6944 0.8835 12 6 -0.0703 -4.8239 0.2790 13 7 -0.7624 -6.0273 0.3713 14 6 -0.6816 -6.7667 1.4953 15 8 0.0567 -6.4222 2.3978 16 6 -1.4896 -7.9951 1.6306 17 6 -2.3392 -8.3916 0.5906 18 6 -3.0865 -9.5294 0.7025 19 6 -3.0098 -10.3052 1.8511 20 8 -3.6094 -11.4511 2.2448 21 6 -3.1591 -11.7613 3.4724 22 8 -3.5405 -12.8447 4.1854 23 7 -2.3008 -10.8644 3.8775 24 6 -2.1624 -9.9218 2.9038 25 6 -1.4010 -8.7620 2.7901 26 6 -0.6277 -3.7547 -0.4226 27 6 0.0426 -2.5706 -0.5132 28 1 -0.4850 0.8401 -0.0004 29 1 2.8331 -3.4195 1.2650 30 1 1.6078 -5.5280 1.4208 31 1 -1.3031 -6.3341 -0.3732 32 1 -2.4037 -7.7937 -0.3065 33 1 -3.7385 -9.8269 -0.1054 34 1 -4.3089 -12.6920 4.7522 35 1 -0.7465 -8.4595 3.5941 36 1 -1.5945 -3.8636 -0.8915 37 1 -0.3921 -1.7424 -1.0532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345214504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:55 Heat of formation + Delta-G solvation = -25.365976 kcal Electronic energy + Delta-G solvation = -24920.345910 eV Core-core repulsion = 21014.775528 eV Total energy + Delta-G solvation = -3905.570382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.46870 -41.50118 -39.61349 -39.00410 -38.25589 -36.26684 -35.88133 -34.73585 -32.15727 -31.51426 -31.12605 -30.19673 -27.12563 -25.42321 -24.42840 -23.48225 -23.11648 -22.63113 -21.67686 -20.45561 -19.55286 -19.19047 -18.80060 -18.52622 -17.97490 -17.07185 -16.90155 -16.32129 -16.18410 -15.71034 -15.59919 -15.40615 -15.12547 -14.87227 -14.49197 -14.17514 -13.98178 -13.68914 -13.63269 -13.53971 -13.22002 -12.86656 -12.78295 -12.60094 -12.54363 -12.47767 -11.82112 -11.71388 -11.38585 -11.23072 -10.92235 -10.65221 -10.06952 -9.71001 -9.45099 -8.72788 -8.49901 -6.32044 -0.55410 -0.48377 0.72860 0.83397 1.10773 1.16274 1.40786 1.46506 1.54545 1.75571 2.02094 2.25040 2.40393 2.58260 2.82684 3.20912 3.56073 3.70014 3.74550 3.84382 3.98618 4.06804 4.42165 4.52070 4.56792 4.76382 4.85839 4.92740 4.98850 5.04170 5.13501 5.15858 5.29828 5.34386 5.44128 5.71452 5.91288 6.02436 6.14449 6.15959 6.28121 6.40360 6.64397 6.69853 6.97809 7.00073 7.29349 8.42612 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.042398 B = 0.002104 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.250259 B =13301.872044 C =13606.230876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.071 0.929 9 C 0.068 3.932 10 C -0.222 4.222 11 C -0.097 4.097 12 C 0.019 3.981 13 N -0.629 5.629 14 C 0.546 3.454 15 O -0.569 6.569 16 C -0.125 4.125 17 C -0.050 4.050 18 C -0.073 4.073 19 C 0.033 3.967 20 O -0.221 6.221 21 C 0.433 3.567 22 O -0.403 6.403 23 N -0.494 5.494 24 C 0.003 3.997 25 C -0.013 4.013 26 C -0.113 4.113 27 C -0.160 4.160 28 H 0.285 0.715 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.420 0.580 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.448 0.552 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 -19.558 -0.536 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.527 4.527 8 H 0.090 0.910 9 C 0.066 3.934 10 C -0.242 4.242 11 C -0.116 4.116 12 C -0.075 4.075 13 N -0.275 5.275 14 C 0.335 3.665 15 O -0.449 6.449 16 C -0.130 4.130 17 C -0.068 4.068 18 C -0.092 4.092 19 C -0.017 4.017 20 O -0.115 6.115 21 C 0.182 3.818 22 O -0.216 6.216 23 N -0.237 5.237 24 C -0.108 4.108 25 C -0.033 4.033 26 C -0.132 4.132 27 C -0.180 4.180 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.260 0.740 32 H 0.201 0.799 33 H 0.204 0.796 34 H 0.314 0.686 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.022 -19.548 0.424 22.953 hybrid contribution -0.344 0.652 0.026 0.737 sum -12.366 -18.896 0.450 22.587 Atomic orbital electron populations 1.69810 1.08476 1.29975 1.38394 1.26717 0.95841 1.04227 0.91637 0.85121 0.78653 0.75924 0.79481 1.18346 1.19432 1.18855 1.19722 0.94824 0.91374 1.46807 0.91032 1.18058 0.93488 0.92598 0.89301 1.20923 1.01651 0.95568 1.06095 1.20536 0.93857 0.97383 0.99872 1.17251 0.93440 0.87170 1.09621 1.42657 1.48294 1.19666 1.16844 1.18517 0.82206 0.83929 0.81851 1.90780 1.40836 1.71733 1.41560 1.19592 1.01237 0.95644 0.96531 1.21261 0.91985 0.95376 0.98183 1.19964 1.01763 0.92641 0.94794 1.20576 0.96580 0.86194 0.98385 1.84492 1.57634 1.36501 1.32911 1.22551 0.90368 0.87853 0.81016 1.84903 1.54645 1.25177 1.56858 1.71070 1.20183 1.03617 1.28871 1.19467 1.01941 0.97318 0.92121 1.20287 0.95546 0.90030 0.97400 1.20580 0.99416 0.91800 1.01451 1.21193 0.97397 0.96608 1.02776 0.90435 0.88778 0.87504 0.74026 0.79914 0.79586 0.68616 0.84921 0.85048 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.72 10.60 21.82 0.23 -43.49 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 38.97 29.56 68.60 2.03 41.00 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.50 -27.17 9.02 23.39 0.21 -26.96 16 8 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 9 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 10 C -0.22 -11.56 9.74 22.48 0.22 -11.34 16 11 C -0.10 -4.61 8.61 22.14 0.19 -4.42 16 12 C 0.02 0.78 6.30 38.60 0.24 1.02 16 13 N -0.63 -19.47 5.25 -305.86 -1.60 -21.07 16 14 C 0.55 18.08 7.59 86.73 0.66 18.74 16 15 O -0.57 -24.55 13.75 -3.97 -0.05 -24.61 16 16 C -0.13 -3.07 5.87 -20.10 -0.12 -3.19 16 17 C -0.05 -0.73 9.47 22.32 0.21 -0.52 16 18 C -0.07 -0.94 9.99 22.02 0.22 -0.72 16 19 C 0.03 0.64 7.42 22.95 0.17 0.81 16 20 O -0.22 -4.01 10.78 10.00 0.11 -3.91 16 21 C 0.43 7.92 9.53 130.43 1.24 9.16 16 22 O -0.40 -4.22 13.62 -62.34 -0.85 -5.07 16 23 N -0.49 -12.21 11.38 -422.84 -4.81 -17.02 16 24 C 0.00 0.07 7.22 39.24 0.28 0.35 16 25 C -0.01 -0.34 9.64 22.76 0.22 -0.12 16 26 C -0.11 -4.79 9.90 22.14 0.22 -4.57 16 27 C -0.16 -8.12 8.61 22.48 0.19 -7.92 16 28 H 0.28 13.48 8.30 -92.71 -0.77 12.71 16 29 H 0.09 4.75 8.06 -2.91 -0.02 4.72 16 30 H 0.11 5.10 6.22 -2.91 -0.02 5.08 16 31 H 0.42 8.61 6.83 -92.71 -0.63 7.97 16 32 H 0.18 1.33 6.38 -2.91 -0.02 1.32 16 33 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.45 -0.99 9.06 -74.06 -0.67 -1.66 16 35 H 0.13 4.02 7.64 -2.91 -0.02 4.00 16 36 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.12 6.36 6.14 -2.91 -0.02 6.34 16 Total: -1.00 -76.35 328.74 -0.57 -76.92 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.12 Total: 21.45 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.51 Total: -24.20 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -6.18 Total: -81.58 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.80 Total: -33.59 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -76.35 -0.57 -76.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345214504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.551 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds