Wall clock time and date at job start Tue Mar 31 2020 14:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48507 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47100 * 300.00201 * 3 2 1 6 6 H 1.48494 * 109.47037 * 60.00451 * 3 2 1 7 7 C 1.37880 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99555 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47360 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.47338 * 180.02562 * 11 10 9 13 13 O 1.42102 * 110.54076 * 68.37294 * 12 11 10 14 14 O 1.42096 * 110.54055 * 291.62344 * 12 11 10 15 15 N 1.65600 * 104.44929 * 180.02562 * 12 11 10 16 16 C 1.46499 * 119.99923 * 64.99767 * 15 12 11 17 17 C 1.50705 * 109.46670 * 164.99870 * 16 15 12 18 18 N 1.29740 * 126.29138 * 269.99474 * 17 16 15 19 19 O 1.41361 * 109.74059 * 180.02562 * 18 17 16 20 20 C 1.34820 * 109.32695 * 0.02562 * 19 18 17 21 21 C 1.38983 * 133.44621 * 179.97438 * 20 19 18 22 22 C 1.37794 * 119.79420 * 180.02562 * 21 20 19 23 23 C 1.38785 * 120.59884 * 0.02562 * 22 21 20 24 24 C 1.36622 * 120.51766 * 359.97438 * 23 22 21 25 25 C 1.39679 * 119.79071 * 0.02562 * 24 23 22 26 26 H 0.96994 * 120.00525 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46898 * 60.00463 * 9 7 2 28 28 H 1.09000 * 109.46963 * 300.00186 * 9 7 2 29 29 H 1.09006 * 109.47132 * 59.99952 * 10 9 7 30 30 H 1.08996 * 109.47231 * 300.00692 * 10 9 7 31 31 H 1.08996 * 109.47217 * 59.99846 * 11 10 9 32 32 H 1.09000 * 109.47273 * 299.99992 * 11 10 9 33 33 H 0.97002 * 119.99684 * 244.99433 * 15 12 11 34 34 H 1.09002 * 109.47179 * 45.00504 * 16 15 12 35 35 H 1.08996 * 109.47112 * 284.99596 * 16 15 12 36 36 H 1.08003 * 120.10178 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.70221 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.74182 * 179.72896 * 23 22 21 39 39 H 1.08005 * 120.10555 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 16 2.6593 -6.3659 -0.0004 13 8 3.3552 -6.4262 1.2371 14 8 3.3569 -6.4261 -1.2369 15 7 1.7089 -7.7220 -0.0019 16 6 0.8507 -8.0138 -1.1528 17 6 0.3843 -9.4450 -1.0815 18 7 0.9846 -10.4747 -1.5941 19 8 0.2423 -11.6459 -1.3191 20 6 -0.8574 -11.3210 -0.6101 21 6 -1.9101 -12.0619 -0.0859 22 6 -2.9145 -11.4262 0.6109 23 6 -2.8858 -10.0508 0.7946 24 6 -1.8600 -9.3045 0.2874 25 6 -0.8318 -9.9294 -0.4222 26 1 -0.4850 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8904 31 1 0.8541 -5.0446 -0.8913 32 1 0.8535 -5.0451 0.8886 33 1 1.7206 -8.3233 0.7592 34 1 1.4133 -7.8604 -2.0737 35 1 -0.0131 -7.3491 -1.1396 36 1 -1.9411 -13.1325 -0.2251 37 1 -3.7320 -12.0033 1.0172 38 1 -3.6826 -9.5662 1.3393 39 1 -1.8445 -8.2345 0.4339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347387984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:59 Heat of formation + Delta-G solvation = -19.395130 kcal Electronic energy + Delta-G solvation = -23999.892187 eV Core-core repulsion = 20230.024672 eV Total energy + Delta-G solvation = -3769.867515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21590 -38.18982 -37.08487 -36.45140 -35.85145 -34.74080 -33.47878 -32.23969 -31.01130 -30.52710 -27.88183 -27.16136 -23.79786 -23.72271 -23.14898 -21.10565 -20.72427 -19.39930 -18.14714 -17.86539 -17.40452 -16.67938 -16.59087 -16.15195 -15.97372 -15.80877 -15.19363 -14.75783 -14.52481 -14.49520 -14.21861 -13.84795 -13.60935 -12.76370 -12.69084 -12.66970 -12.34352 -12.25696 -12.04183 -11.94938 -11.86385 -11.80953 -11.59758 -11.46542 -11.29753 -10.96861 -10.89664 -10.48610 -10.01966 -9.97962 -9.44340 -9.40397 -9.14984 -9.08951 -8.44891 -6.09814 -4.12744 0.07593 0.32868 0.80148 1.49788 2.04337 2.73381 3.13523 3.27046 3.34887 3.39671 3.43067 3.74244 3.84675 4.08607 4.28424 4.39303 4.44997 4.51338 4.68603 4.79382 4.84987 4.95133 5.05268 5.08883 5.24404 5.26988 5.35620 5.39945 5.60806 5.74094 5.79860 5.88196 6.13795 6.19830 6.37491 6.60831 6.77989 6.81102 7.51958 7.61263 7.88250 8.28421 8.93726 9.52394 11.01408 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002527 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.818497 B =11075.796557 C =12090.799011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.607 4.607 12 S 2.600 3.400 13 O -0.955 6.955 14 O -0.956 6.956 15 N -1.121 6.121 16 C 0.187 3.813 17 C 0.125 3.875 18 N -0.262 5.262 19 O -0.089 6.089 20 C 0.083 3.917 21 C -0.127 4.127 22 C -0.059 4.059 23 C -0.148 4.148 24 C -0.036 4.036 25 C -0.192 4.192 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.418 0.582 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 -23.318 0.971 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.696 3.304 13 O -0.946 6.946 14 O -0.946 6.946 15 N -0.880 5.880 16 C 0.060 3.940 17 C -0.058 4.058 18 N -0.005 5.005 19 O -0.100 6.100 20 C 0.029 3.971 21 C -0.146 4.146 22 C -0.078 4.078 23 C -0.166 4.166 24 C -0.056 4.056 25 C -0.196 4.196 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.252 0.748 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.543 -23.668 0.077 24.556 hybrid contribution -0.976 1.052 0.715 1.603 sum -7.519 -22.616 0.792 23.847 Atomic orbital electron populations 1.69957 1.06086 1.26717 1.50675 1.25017 0.94889 0.99398 0.95067 0.86502 0.80211 0.83492 0.77634 1.19591 1.20932 1.20936 1.21288 0.93317 0.90854 1.50971 0.92291 1.19071 0.93512 0.90437 0.97758 1.21522 0.99448 0.91497 1.02157 1.30547 1.16280 1.15652 1.11433 1.05473 0.75572 0.74996 0.74389 1.93599 1.70269 1.85680 1.45022 1.93586 1.69919 1.85494 1.45581 1.55816 1.62167 1.43234 1.26760 1.19765 0.95826 0.87225 0.91219 1.24447 0.91707 0.96528 0.93162 1.79985 1.12115 0.91012 1.17381 1.89192 1.30188 1.27682 1.62980 1.20323 0.89702 0.93589 0.93503 1.20083 0.92441 1.00413 1.01708 1.21203 0.96905 0.94820 0.94906 1.20881 0.99443 0.94000 1.02280 1.20565 0.91104 1.00845 0.93067 1.20674 0.98344 0.92696 1.07840 0.92931 0.96062 0.96083 0.91456 0.91425 0.85300 0.85008 0.74773 0.87147 0.88143 0.84290 0.84159 0.84487 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 10 C -0.11 -2.03 5.16 -26.74 -0.14 -2.17 16 11 C -0.61 -8.23 6.07 37.15 0.23 -8.00 16 12 S 2.60 35.08 5.46 -107.50 -0.59 34.50 16 13 O -0.96 -15.93 18.08 -57.54 -1.04 -16.97 16 14 O -0.96 -15.91 17.49 -57.54 -1.01 -16.91 16 15 N -1.12 -11.20 5.88 -11.65 -0.07 -11.27 16 16 C 0.19 1.66 6.73 -5.19 -0.03 1.63 16 17 C 0.12 1.29 6.86 -80.12 -0.55 0.74 16 18 N -0.26 -3.32 12.81 34.91 0.45 -2.87 16 19 O -0.09 -1.09 12.06 7.68 0.09 -1.00 16 20 C 0.08 0.82 7.48 -38.47 -0.29 0.53 16 21 C -0.13 -0.89 10.07 -39.47 -0.40 -1.28 16 22 C -0.06 -0.31 10.02 -39.54 -0.40 -0.71 16 23 C -0.15 -0.83 9.97 -39.96 -0.40 -1.23 16 24 C -0.04 -0.25 10.05 -39.63 -0.40 -0.65 16 25 C -0.19 -1.79 6.32 -105.17 -0.67 -2.45 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.13 1.54 8.14 -51.92 -0.42 1.11 16 33 H 0.42 3.70 8.61 -34.47 -0.30 3.41 16 34 H 0.11 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.14 0.33 8.06 -52.48 -0.42 -0.09 16 38 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -36.64 355.79 -9.56 -46.20 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.89 Total: -1.78 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -3.59 Total: -26.22 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 1.12 Total: -39.37 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.95 Total: -34.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 35.08 SS G_CDS: -0.59 Total: 34.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.64 -9.56 -46.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347387984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.804 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds