Wall clock time and date at job start Tue Mar 31 2020 14:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48507 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47100 * 300.00201 * 3 2 1 6 6 H 1.48494 * 109.47037 * 60.00451 * 3 2 1 7 7 C 1.37880 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99555 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47360 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.47338 * 180.02562 * 11 10 9 13 13 O 1.42102 * 110.54076 * 68.37294 * 12 11 10 14 14 O 1.42096 * 110.54055 * 291.62344 * 12 11 10 15 15 N 1.65600 * 104.44929 * 180.02562 * 12 11 10 16 16 C 1.46499 * 119.99923 * 64.99767 * 15 12 11 17 17 C 1.50705 * 109.46670 * 164.99870 * 16 15 12 18 18 N 1.29740 * 126.29138 * 269.99474 * 17 16 15 19 19 O 1.41361 * 109.74059 * 180.02562 * 18 17 16 20 20 C 1.34820 * 109.32695 * 0.02562 * 19 18 17 21 21 C 1.38983 * 133.44621 * 179.97438 * 20 19 18 22 22 C 1.37794 * 119.79420 * 180.02562 * 21 20 19 23 23 C 1.38785 * 120.59884 * 0.02562 * 22 21 20 24 24 C 1.36622 * 120.51766 * 359.97438 * 23 22 21 25 25 C 1.39679 * 119.79071 * 0.02562 * 24 23 22 26 26 H 0.96994 * 120.00525 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46898 * 60.00463 * 9 7 2 28 28 H 1.09000 * 109.46963 * 300.00186 * 9 7 2 29 29 H 1.09006 * 109.47132 * 59.99952 * 10 9 7 30 30 H 1.08996 * 109.47231 * 300.00692 * 10 9 7 31 31 H 1.08996 * 109.47217 * 59.99846 * 11 10 9 32 32 H 1.09000 * 109.47273 * 299.99992 * 11 10 9 33 33 H 0.97002 * 119.99684 * 244.99433 * 15 12 11 34 34 H 1.09002 * 109.47179 * 45.00504 * 16 15 12 35 35 H 1.08996 * 109.47112 * 284.99596 * 16 15 12 36 36 H 1.08003 * 120.10178 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.70221 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.74182 * 179.72896 * 23 22 21 39 39 H 1.08005 * 120.10555 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 16 2.6593 -6.3659 -0.0004 13 8 3.3552 -6.4262 1.2371 14 8 3.3569 -6.4261 -1.2369 15 7 1.7089 -7.7220 -0.0019 16 6 0.8507 -8.0138 -1.1528 17 6 0.3843 -9.4450 -1.0815 18 7 0.9846 -10.4747 -1.5941 19 8 0.2423 -11.6459 -1.3191 20 6 -0.8574 -11.3210 -0.6101 21 6 -1.9101 -12.0619 -0.0859 22 6 -2.9145 -11.4262 0.6109 23 6 -2.8858 -10.0508 0.7946 24 6 -1.8600 -9.3045 0.2874 25 6 -0.8318 -9.9294 -0.4222 26 1 -0.4850 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8904 31 1 0.8541 -5.0446 -0.8913 32 1 0.8535 -5.0451 0.8886 33 1 1.7206 -8.3233 0.7592 34 1 1.4133 -7.8604 -2.0737 35 1 -0.0131 -7.3491 -1.1396 36 1 -1.9411 -13.1325 -0.2251 37 1 -3.7320 -12.0033 1.0172 38 1 -3.6826 -9.5662 1.3393 39 1 -1.8445 -8.2345 0.4339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347387984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:58 Heat of formation + Delta-G solvation = -46.153994 kcal Electronic energy + Delta-G solvation = -24001.052538 eV Core-core repulsion = 20230.024672 eV Total energy + Delta-G solvation = -3771.027867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.88923 -38.72535 -38.27519 -37.29878 -37.04814 -36.43253 -34.25444 -34.13541 -31.54243 -31.09975 -29.62726 -27.93967 -25.60464 -24.26414 -23.72593 -22.41752 -21.76238 -20.46306 -18.97001 -18.62337 -18.50266 -18.21580 -17.44673 -17.18268 -17.01728 -16.48718 -16.43475 -16.25773 -15.58461 -15.31935 -15.00277 -14.56968 -14.49237 -14.34442 -14.01169 -13.48753 -13.29521 -13.27838 -13.23427 -13.17264 -13.13204 -12.96027 -12.75833 -12.59089 -12.51804 -12.27209 -12.14304 -12.06945 -11.70313 -11.34685 -11.15270 -10.59521 -10.54895 -10.00490 -9.64395 -8.20812 -6.30451 -0.86964 -0.43525 0.26114 0.82008 1.34408 1.40490 1.42234 1.54382 1.78489 2.41408 2.62654 2.69474 2.80817 3.10659 3.13300 3.23135 3.53647 3.71860 3.88371 3.97198 4.07557 4.21830 4.25706 4.32340 4.42906 4.45356 4.52912 4.70712 4.73071 4.93170 5.00659 5.09114 5.11298 5.30225 5.42508 5.50006 5.68070 5.68734 5.82414 5.83721 6.10309 6.23469 6.85636 7.38689 8.90555 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002527 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.818497 B =11075.796557 C =12090.799011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.109 4.109 11 C -0.601 4.601 12 S 2.630 3.370 13 O -0.988 6.988 14 O -0.989 6.989 15 N -1.109 6.109 16 C 0.178 3.822 17 C 0.131 3.869 18 N -0.306 5.306 19 O -0.114 6.114 20 C 0.052 3.948 21 C -0.137 4.137 22 C -0.048 4.048 23 C -0.145 4.145 24 C -0.042 4.042 25 C -0.207 4.207 26 H 0.264 0.736 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.426 0.574 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -23.352 1.841 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.589 4.589 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.149 4.149 11 C -0.733 4.733 12 S 2.726 3.274 13 O -0.978 6.978 14 O -0.979 6.979 15 N -0.870 5.870 16 C 0.051 3.949 17 C -0.051 4.051 18 N -0.050 5.050 19 O -0.125 6.125 20 C -0.001 4.001 21 C -0.157 4.157 22 C -0.067 4.067 23 C -0.163 4.163 24 C -0.062 4.062 25 C -0.211 4.211 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.262 0.738 34 H 0.124 0.876 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.193 0.807 38 H 0.183 0.817 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.238 -23.716 0.956 25.124 hybrid contribution -0.586 0.997 0.487 1.254 sum -8.824 -22.719 1.442 24.415 Atomic orbital electron populations 1.70052 1.07437 1.27742 1.51553 1.25862 0.95784 1.02970 0.94752 0.85500 0.79086 0.79256 0.77848 1.19011 1.20335 1.20311 1.21785 0.93693 0.92682 1.50707 0.92407 1.18970 0.94001 0.91475 0.96275 1.21335 0.98796 0.92582 1.02142 1.30447 1.16252 1.12407 1.14195 1.04345 0.75127 0.75124 0.72809 1.93552 1.71591 1.86372 1.46318 1.93547 1.71218 1.86173 1.46917 1.55359 1.62051 1.42076 1.27471 1.20127 0.96989 0.87330 0.90410 1.24677 0.91848 0.96431 0.92182 1.79914 1.13694 0.91845 1.19534 1.89116 1.31368 1.27917 1.64100 1.20845 0.90040 0.94707 0.94482 1.20467 0.92092 1.01326 1.01774 1.21676 0.96727 0.95151 0.93112 1.21325 0.99426 0.94213 1.01320 1.20914 0.90627 1.02132 0.92509 1.20811 0.98804 0.92569 1.08895 0.92674 0.97388 0.97505 0.91681 0.91542 0.82518 0.82564 0.73848 0.87563 0.84102 0.82878 0.80739 0.81662 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -30.28 9.11 25.60 0.23 -30.05 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.51 4.97 29.85 0.15 1.65 16 10 C -0.11 -4.08 5.16 30.59 0.16 -3.92 16 11 C -0.60 -15.03 6.07 71.98 0.44 -14.59 16 12 S 2.63 67.91 5.46 -56.49 -0.31 67.61 16 13 O -0.99 -32.25 18.08 -127.65 -2.31 -34.56 16 14 O -0.99 -32.39 17.49 -127.65 -2.23 -34.62 16 15 N -1.11 -20.48 5.88 -190.79 -1.12 -21.60 16 16 C 0.18 2.88 6.73 85.63 0.58 3.46 16 17 C 0.13 2.66 6.86 45.04 0.31 2.96 16 18 N -0.31 -8.04 12.81 -43.47 -0.56 -8.60 16 19 O -0.11 -2.95 12.06 29.86 0.36 -2.59 16 20 C 0.05 1.04 7.48 22.99 0.17 1.21 16 21 C -0.14 -1.72 10.07 22.34 0.23 -1.50 16 22 C -0.05 -0.35 10.02 22.30 0.22 -0.12 16 23 C -0.14 -1.11 9.97 22.02 0.22 -0.89 16 24 C -0.04 -0.47 10.05 22.24 0.22 -0.25 16 25 C -0.21 -3.64 6.32 -20.22 -0.13 -3.77 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.16 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.16 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.43 6.99 8.61 -96.74 -0.83 6.16 16 34 H 0.11 1.84 7.69 -2.39 -0.02 1.83 16 35 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 38 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 39 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -81.14 355.79 -0.35 -81.49 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.25 Total: 6.19 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 3.26 Total: -45.07 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -1.39 Total: -83.76 kcal Atomic # 8 Polarization: -67.58 SS G_CDS: -4.18 Total: -71.76 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 67.91 SS G_CDS: -0.31 Total: 67.61 kcal Total: -81.14 -0.35 -81.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347387984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.333 kcal (2) G-P(sol) polarization free energy of solvation -81.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds