Wall clock time and date at job start Tue Mar 31 2020 14:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00142 * 2 1 4 4 H 1.48501 * 109.47204 * 270.00723 * 3 2 1 5 5 H 1.48495 * 109.46910 * 30.00537 * 3 2 1 6 6 H 1.48499 * 109.47185 * 150.00531 * 3 2 1 7 7 C 1.37879 * 119.99555 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99317 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00500 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47392 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00267 * 179.97438 * 10 9 7 12 12 O 1.21558 * 119.99645 * 359.97438 * 11 10 9 13 13 C 1.47759 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.40594 * 120.26945 * 351.86891 * 13 11 10 15 15 N 1.30798 * 121.53711 * 179.97438 * 14 13 11 16 16 C 1.33819 * 121.72035 * 359.97438 * 15 14 13 17 17 C 1.40525 * 120.81275 * 179.97438 * 16 15 14 18 18 C 1.36131 * 119.81238 * 180.02562 * 17 16 15 19 19 C 1.39344 * 121.08850 * 0.02562 * 18 17 16 20 20 C 1.36141 * 120.83215 * 0.02562 * 19 18 17 21 21 C 1.40535 * 119.62055 * 359.95661 * 20 19 18 22 22 C 1.39010 * 120.26395 * 171.85422 * 13 11 10 23 23 C 1.50703 * 121.02216 * 0.03990 * 22 13 11 24 24 F 1.39895 * 109.47311 * 77.89527 * 23 22 13 25 25 F 1.39901 * 109.47346 * 197.89900 * 23 22 13 26 26 F 1.39908 * 109.46561 * 317.89619 * 23 22 13 27 27 H 0.97002 * 119.99319 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47515 * 59.99703 * 9 7 2 29 29 H 1.09008 * 109.46728 * 300.00289 * 9 7 2 30 30 H 0.97001 * 120.00224 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.23249 * 359.70787 * 14 13 11 32 32 H 1.08000 * 120.09109 * 0.03273 * 17 16 15 33 33 H 1.08001 * 119.45527 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.58208 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.18990 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5586 -5.1054 0.0009 13 6 2.7139 -6.0065 0.0006 14 6 4.0881 -5.7641 -0.1712 15 7 4.9597 -6.7393 -0.1743 16 6 4.5887 -8.0150 -0.0140 17 6 5.5413 -9.0480 -0.0210 18 6 5.1412 -10.3388 0.1434 19 6 3.7963 -10.6584 0.3192 20 6 2.8438 -9.6858 0.3308 21 6 3.2208 -8.3422 0.1644 22 6 2.2658 -7.3112 0.1712 23 6 0.8007 -7.6111 0.3576 24 9 0.1517 -7.5537 -0.8804 25 9 0.6523 -8.8909 0.9030 26 9 0.2380 -6.6671 1.2234 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8897 30 1 3.1566 -3.4355 -0.0009 31 1 4.4316 -4.7493 -0.3080 32 1 6.5879 -8.8185 -0.1563 33 1 5.8782 -11.1282 0.1366 34 1 3.5060 -11.6907 0.4470 35 1 1.8043 -9.9453 0.4674 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349551810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:02 Heat of formation + Delta-G solvation = -126.923349 kcal Electronic energy + Delta-G solvation = -27267.629736 eV Core-core repulsion = 22815.798756 eV Total energy + Delta-G solvation = -4451.830980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.40540 -49.00978 -48.65359 -42.27196 -40.53128 -38.10371 -36.37734 -35.20924 -34.48387 -32.15365 -31.43609 -29.50305 -27.91950 -25.77936 -25.05402 -24.24983 -23.28322 -22.09315 -20.13816 -19.73504 -19.63529 -19.48801 -18.64471 -18.18446 -17.57572 -16.99256 -16.73768 -16.65912 -16.19783 -16.03066 -15.56960 -15.51826 -15.34213 -15.25695 -15.12294 -14.93956 -14.87866 -14.49383 -14.04996 -13.98589 -13.82379 -13.52737 -12.92479 -12.90392 -12.82238 -12.70039 -12.32842 -12.22300 -11.98076 -11.50145 -11.31643 -10.81053 -10.72831 -10.11946 -9.87605 -9.50906 -8.28816 -6.45336 -1.32666 -0.64084 0.52708 1.32665 1.38771 1.45181 1.47248 1.58307 2.04993 2.08817 2.39680 2.43577 2.77976 2.80518 2.95962 3.06875 3.22640 3.32479 3.42559 3.60788 3.75016 3.97094 4.15736 4.21360 4.37352 4.47477 4.80625 4.93444 5.08355 5.12848 5.22284 5.24951 5.37209 5.38452 5.59861 5.72278 5.81688 6.44628 6.60193 6.68959 7.14095 7.30515 8.83250 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.003580 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.315886 B = 7819.209976 C = 9050.351776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.268 3.732 10 N -0.688 5.688 11 C 0.531 3.469 12 O -0.564 6.564 13 C -0.136 4.136 14 C 0.155 3.845 15 N -0.450 5.450 16 C 0.121 3.879 17 C -0.101 4.101 18 C -0.075 4.075 19 C -0.087 4.087 20 C -0.154 4.154 21 C -0.086 4.086 22 C -0.083 4.083 23 C 0.516 3.484 24 F -0.174 7.174 25 F -0.158 7.158 26 F -0.164 7.164 27 H 0.269 0.731 28 H -0.004 1.004 29 H -0.006 1.006 30 H 0.409 0.591 31 H 0.197 0.803 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.294 -23.003 0.663 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.106 0.894 9 C 0.145 3.855 10 N -0.337 5.337 11 C 0.316 3.684 12 O -0.444 6.444 13 C -0.142 4.142 14 C -0.018 4.018 15 N -0.156 5.156 16 C -0.001 4.001 17 C -0.119 4.119 18 C -0.094 4.094 19 C -0.105 4.105 20 C -0.171 4.171 21 C -0.088 4.088 22 C -0.093 4.093 23 C 0.461 3.539 24 F -0.155 7.155 25 F -0.139 7.139 26 F -0.145 7.145 27 H 0.077 0.923 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.247 0.753 31 H 0.214 0.786 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.188 0.812 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.183 -22.922 0.565 26.449 hybrid contribution -1.233 1.221 0.110 1.739 sum 11.950 -21.701 0.674 24.783 Atomic orbital electron populations 1.70140 1.08260 1.28582 1.49846 1.26037 0.95741 1.03828 0.93833 0.85165 0.78550 0.76992 0.78582 1.19625 1.21177 1.17766 1.21602 0.94477 0.90285 1.53056 0.89436 1.18664 0.88454 0.83548 0.94790 1.46043 1.11629 1.04733 1.71323 1.18418 0.88005 0.83792 0.78157 1.90858 1.17555 1.84780 1.51230 1.20912 0.96932 0.92424 1.03883 1.23396 0.85828 1.00423 0.92159 1.68023 1.37062 0.99677 1.10856 1.19470 0.91004 0.91993 0.97619 1.21176 0.99809 0.91050 0.99855 1.21612 0.97054 0.96624 0.94110 1.21590 0.92505 1.01122 0.95277 1.22666 1.04681 0.90240 0.99553 1.18643 0.93131 0.94507 1.02512 1.20731 0.92171 0.94622 1.01813 1.18035 0.87169 0.73897 0.74764 1.93206 1.83286 1.96019 1.43009 1.92848 1.96009 1.38825 1.86237 1.93318 1.86757 1.64281 1.70169 0.92252 0.98654 0.98779 0.75323 0.78633 0.82076 0.80474 0.81179 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 41.75 29.54 68.60 2.03 43.77 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.56 -29.57 9.28 25.60 0.24 -29.33 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.43 5.43 85.63 0.46 14.89 16 10 N -0.69 -28.88 5.50 -469.81 -2.58 -31.46 16 11 C 0.53 22.20 7.45 86.76 0.65 22.84 16 12 O -0.56 -27.93 11.70 -3.90 -0.05 -27.97 16 13 C -0.14 -4.50 5.86 -20.00 -0.12 -4.61 16 14 C 0.16 4.15 10.65 85.42 0.91 5.06 16 15 N -0.45 -11.40 10.30 -187.69 -1.93 -13.34 16 16 C 0.12 2.83 6.61 40.27 0.27 3.10 16 17 C -0.10 -1.53 9.97 22.34 0.22 -1.31 16 18 C -0.07 -0.72 9.94 22.05 0.22 -0.50 16 19 C -0.09 -1.00 9.96 22.05 0.22 -0.78 16 20 C -0.15 -2.94 9.02 22.34 0.20 -2.74 16 21 C -0.09 -2.18 5.74 -21.28 -0.12 -2.30 16 22 C -0.08 -2.60 5.52 -19.12 -0.11 -2.71 16 23 C 0.52 17.41 2.71 71.24 0.19 17.60 16 24 F -0.17 -6.36 16.50 44.97 0.74 -5.62 16 25 F -0.16 -4.21 13.10 44.97 0.59 -3.62 16 26 F -0.16 -6.68 13.48 44.97 0.61 -6.07 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H 0.41 13.82 6.41 -92.71 -0.59 13.23 16 31 H 0.20 4.16 6.46 -2.91 -0.02 4.14 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 34 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.17 3.20 4.60 -2.91 -0.01 3.19 16 Total: -1.00 -73.71 312.15 3.98 -69.74 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.59 Total: 9.91 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 3.70 Total: 19.95 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.23 Total: -100.09 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 9 Polarization: -17.25 SS G_CDS: 1.94 Total: -15.31 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.71 3.98 -69.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349551810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.185 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds