Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47047 * 240.00609 * 3 2 1 5 5 H 1.48499 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46991 * 120.00360 * 3 2 1 7 7 C 1.37876 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99426 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00161 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47280 * 179.97438 * 9 7 2 11 11 S 1.65595 * 120.00184 * 165.00119 * 10 9 7 12 12 O 1.42108 * 106.40245 * 311.46106 * 11 10 9 13 13 O 1.42104 * 106.40528 * 178.54134 * 11 10 9 14 14 C 1.76198 * 107.21958 * 65.00019 * 11 10 9 15 15 C 1.38283 * 119.93326 * 90.00074 * 14 11 10 16 16 C 1.38108 * 120.07695 * 179.97438 * 15 14 11 17 17 C 1.38880 * 119.92280 * 0.02604 * 16 15 14 18 18 N 1.39930 * 120.06407 * 180.02562 * 17 16 15 19 19 C 1.46760 * 124.35005 * 354.19653 * 18 17 16 20 20 C 1.54480 * 105.47151 * 196.75181 * 19 18 17 21 21 C 1.54632 * 101.76655 * 334.58571 * 20 19 18 22 22 C 1.34420 * 124.34482 * 173.90415 * 18 17 16 23 23 O 1.21283 * 124.94420 * 359.82851 * 22 18 17 24 24 C 1.38865 * 119.86233 * 0.27230 * 17 16 15 25 25 C 1.38111 * 119.92824 * 359.42618 * 24 17 16 26 26 H 0.97005 * 119.99638 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47176 * 59.99819 * 9 7 2 28 28 H 1.09001 * 109.47151 * 300.00615 * 9 7 2 29 29 H 0.96999 * 119.99805 * 344.99780 * 10 9 7 30 30 H 1.08000 * 119.95946 * 359.97438 * 15 14 11 31 31 H 1.07992 * 120.03624 * 179.97438 * 16 15 14 32 32 H 1.09000 * 110.24861 * 315.75480 * 19 18 17 33 33 H 1.09006 * 110.24567 * 77.66933 * 19 18 17 34 34 H 1.08996 * 110.96807 * 92.70935 * 20 19 18 35 35 H 1.09004 * 110.96937 * 216.46582 * 20 19 18 36 36 H 1.08997 * 110.48275 * 143.47464 * 21 20 19 37 37 H 1.08998 * 110.48451 * 265.98548 * 21 20 19 38 38 H 1.08004 * 120.03548 * 179.70843 * 24 17 16 39 39 H 1.08002 * 119.96742 * 180.29653 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 16 1.6884 -5.1423 0.3691 12 8 0.9263 -5.0308 1.5633 13 8 2.8239 -5.9881 0.2479 14 6 0.5639 -5.6351 -0.8947 15 6 1.0333 -6.2870 -2.0202 16 6 0.1544 -6.6750 -3.0124 17 6 -1.2022 -6.4093 -2.8789 18 7 -2.0954 -6.8016 -3.8821 19 6 -1.6932 -7.3881 -5.1659 20 6 -2.9281 -7.2552 -6.0845 21 6 -4.0824 -7.2098 -5.0566 22 6 -3.4323 -6.6949 -3.7913 23 8 -4.0303 -6.2509 -2.8342 24 6 -1.6697 -5.7490 -1.7503 25 6 -0.7864 -5.3691 -0.7589 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 3.1347 -3.4539 -0.2199 30 1 2.0884 -6.4929 -2.1235 31 1 0.5217 -7.1837 -3.8913 32 1 -0.8506 -6.8378 -5.5846 33 1 -1.4300 -8.4378 -5.0351 34 1 -2.8855 -6.3332 -6.6643 35 1 -3.0225 -8.1218 -6.7390 36 1 -4.8631 -6.5261 -5.3898 37 1 -4.4920 -8.2075 -4.8987 38 1 -2.7235 -5.5367 -1.6458 39 1 -1.1499 -4.8597 0.1214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355094200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -77.346643 kcal Electronic energy + Delta-G solvation = -24879.833727 eV Core-core repulsion = 21107.453246 eV Total energy + Delta-G solvation = -3772.380481 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35369 -38.67208 -36.94212 -36.65256 -35.27185 -34.58625 -33.50611 -32.12301 -31.02527 -29.40975 -28.13119 -26.70846 -23.76262 -23.44532 -22.46432 -21.53362 -20.14665 -19.02576 -18.00234 -17.56661 -17.20387 -17.07247 -16.07430 -15.86851 -15.38207 -14.97977 -14.57727 -14.34685 -14.22787 -14.10021 -14.03240 -13.65911 -13.39197 -13.34857 -12.85184 -12.77354 -12.49476 -12.08554 -12.00817 -11.77587 -11.61648 -11.54446 -11.48333 -11.29816 -10.92152 -10.77600 -10.63196 -10.54847 -10.09116 -9.87247 -9.42810 -8.98223 -8.88107 -8.31287 -8.19262 -6.15249 -4.20161 0.76945 1.11651 1.39888 2.21810 2.42191 3.28144 3.32789 3.34734 3.51986 3.78371 3.86316 3.92298 4.29216 4.33609 4.36859 4.47102 4.68826 4.85204 4.95550 4.97800 4.99776 5.18344 5.21427 5.27406 5.37060 5.43925 5.45846 5.53266 5.89849 5.98715 6.10816 6.30968 6.38604 6.48189 6.76607 6.96472 7.31415 7.37448 7.68545 7.82189 7.83767 8.20311 8.83782 9.44593 10.95011 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.003609 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.347625 B = 7757.484905 C = 8985.384684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.246 3.754 10 N -1.103 6.103 11 S 2.693 3.307 12 O -0.963 6.963 13 O -0.982 6.982 14 C -0.693 4.693 15 C 0.008 3.992 16 C -0.184 4.184 17 C 0.210 3.790 18 N -0.562 5.562 19 C 0.092 3.908 20 C -0.131 4.131 21 C -0.153 4.153 22 C 0.514 3.486 23 O -0.501 6.501 24 C -0.177 4.177 25 C 0.018 3.982 26 H 0.266 0.734 27 H 0.022 0.978 28 H 0.039 0.961 29 H 0.410 0.590 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.160 0.840 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -16.422 -14.635 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.123 3.877 10 N -0.865 5.865 11 S 2.781 3.219 12 O -0.953 6.953 13 O -0.972 6.972 14 C -0.779 4.779 15 C -0.012 4.012 16 C -0.205 4.205 17 C 0.115 3.885 18 N -0.285 5.285 19 C -0.030 4.030 20 C -0.169 4.169 21 C -0.193 4.193 22 C 0.303 3.697 23 O -0.375 6.375 24 C -0.198 4.198 25 C -0.002 4.002 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.244 0.756 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.178 0.822 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.239 -16.596 -13.390 21.958 hybrid contribution 0.417 1.088 -0.940 1.497 sum -4.822 -15.508 -14.329 21.659 Atomic orbital electron populations 1.69934 1.06044 1.27445 1.49332 1.24973 0.94967 0.99424 0.94812 0.86476 0.79422 0.82291 0.78739 1.20126 1.21130 1.20007 1.21157 0.93413 0.89931 1.52522 0.91652 1.19084 0.87804 0.83490 0.97351 1.55441 1.19538 1.23798 1.87765 1.01744 0.73163 0.72806 0.74175 1.93563 1.72666 1.86363 1.42711 1.93513 1.49696 1.66663 1.87374 1.31131 1.11330 1.16649 1.18828 1.20654 0.99831 0.90626 0.90099 1.20763 0.91159 1.07105 1.01494 1.18016 0.89144 0.93470 0.87840 1.45958 1.06700 1.59134 1.16728 1.22322 0.99094 0.99541 0.82022 1.22630 0.92578 1.04613 0.97048 1.22351 0.99365 1.04485 0.93062 1.21182 0.81672 0.77546 0.89306 1.90682 1.67173 1.43977 1.35672 1.21685 1.02924 1.01701 0.93496 1.20931 0.90780 0.91061 0.97426 0.92405 0.96045 0.94301 0.75571 0.83963 0.85125 0.89146 0.89877 0.89383 0.88469 0.87288 0.87204 0.82227 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.34 9.27 -34.44 -0.32 -14.66 16 8 H 0.07 1.68 7.65 -52.49 -0.40 1.27 16 9 C 0.25 6.16 5.97 -5.20 -0.03 6.13 16 10 N -1.10 -22.63 5.99 -11.66 -0.07 -22.70 16 11 S 2.69 51.53 5.74 -107.50 -0.62 50.91 16 12 O -0.96 -21.32 16.75 -57.17 -0.96 -22.28 16 13 O -0.98 -19.17 17.28 -57.17 -0.99 -20.15 16 14 C -0.69 -11.99 5.95 -39.55 -0.24 -12.23 16 15 C 0.01 0.11 9.51 -39.61 -0.38 -0.26 16 16 C -0.18 -2.35 9.41 -39.39 -0.37 -2.72 16 17 C 0.21 2.97 6.60 -83.69 -0.55 2.41 16 18 N -0.56 -6.20 3.14 -112.27 -0.35 -6.55 16 19 C 0.09 0.56 6.26 -3.12 -0.02 0.54 16 20 C -0.13 -0.51 7.18 -25.10 -0.18 -0.69 16 21 C -0.15 -0.93 6.86 -26.74 -0.18 -1.11 16 22 C 0.51 5.96 7.92 -10.86 -0.09 5.88 16 23 O -0.50 -7.89 14.82 5.55 0.08 -7.81 16 24 C -0.18 -2.95 9.28 -39.40 -0.37 -3.31 16 25 C 0.02 0.32 9.51 -39.61 -0.38 -0.06 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.04 1.05 7.75 -51.93 -0.40 0.65 16 29 H 0.41 7.61 8.54 -34.47 -0.29 7.31 16 30 H 0.14 1.80 7.61 -52.49 -0.40 1.40 16 31 H 0.13 1.18 7.02 -52.49 -0.37 0.81 16 32 H 0.09 0.48 7.71 -51.93 -0.40 0.08 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.16 2.76 5.27 -52.48 -0.28 2.48 16 39 H 0.15 2.61 7.61 -52.49 -0.40 2.21 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -35.92 343.37 -9.82 -45.74 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.61 Total: 5.17 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -3.19 Total: -18.48 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.31 Total: -54.20 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -1.86 Total: -50.24 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.62 Total: 50.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.92 -9.82 -45.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355094200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.610 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds