Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47047 * 240.00609 * 3 2 1 5 5 H 1.48499 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46991 * 120.00360 * 3 2 1 7 7 C 1.37876 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99426 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00161 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47280 * 179.97438 * 9 7 2 11 11 S 1.65595 * 120.00184 * 165.00119 * 10 9 7 12 12 O 1.42108 * 106.40245 * 311.46106 * 11 10 9 13 13 O 1.42104 * 106.40528 * 178.54134 * 11 10 9 14 14 C 1.76198 * 107.21958 * 65.00019 * 11 10 9 15 15 C 1.38283 * 119.93326 * 90.00074 * 14 11 10 16 16 C 1.38108 * 120.07695 * 179.97438 * 15 14 11 17 17 C 1.38880 * 119.92280 * 0.02604 * 16 15 14 18 18 N 1.39930 * 120.06407 * 180.02562 * 17 16 15 19 19 C 1.46760 * 124.35005 * 354.19653 * 18 17 16 20 20 C 1.54480 * 105.47151 * 196.75181 * 19 18 17 21 21 C 1.54632 * 101.76655 * 334.58571 * 20 19 18 22 22 C 1.34420 * 124.34482 * 173.90415 * 18 17 16 23 23 O 1.21283 * 124.94420 * 359.82851 * 22 18 17 24 24 C 1.38865 * 119.86233 * 0.27230 * 17 16 15 25 25 C 1.38111 * 119.92824 * 359.42618 * 24 17 16 26 26 H 0.97005 * 119.99638 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47176 * 59.99819 * 9 7 2 28 28 H 1.09001 * 109.47151 * 300.00615 * 9 7 2 29 29 H 0.96999 * 119.99805 * 344.99780 * 10 9 7 30 30 H 1.08000 * 119.95946 * 359.97438 * 15 14 11 31 31 H 1.07992 * 120.03624 * 179.97438 * 16 15 14 32 32 H 1.09000 * 110.24861 * 315.75480 * 19 18 17 33 33 H 1.09006 * 110.24567 * 77.66933 * 19 18 17 34 34 H 1.08996 * 110.96807 * 92.70935 * 20 19 18 35 35 H 1.09004 * 110.96937 * 216.46582 * 20 19 18 36 36 H 1.08997 * 110.48275 * 143.47464 * 21 20 19 37 37 H 1.08998 * 110.48451 * 265.98548 * 21 20 19 38 38 H 1.08004 * 120.03548 * 179.70843 * 24 17 16 39 39 H 1.08002 * 119.96742 * 180.29653 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 16 1.6884 -5.1423 0.3691 12 8 0.9263 -5.0308 1.5633 13 8 2.8239 -5.9881 0.2479 14 6 0.5639 -5.6351 -0.8947 15 6 1.0333 -6.2870 -2.0202 16 6 0.1544 -6.6750 -3.0124 17 6 -1.2022 -6.4093 -2.8789 18 7 -2.0954 -6.8016 -3.8821 19 6 -1.6932 -7.3881 -5.1659 20 6 -2.9281 -7.2552 -6.0845 21 6 -4.0824 -7.2098 -5.0566 22 6 -3.4323 -6.6949 -3.7913 23 8 -4.0303 -6.2509 -2.8342 24 6 -1.6697 -5.7490 -1.7503 25 6 -0.7864 -5.3691 -0.7589 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 3.1347 -3.4539 -0.2199 30 1 2.0884 -6.4929 -2.1235 31 1 0.5217 -7.1837 -3.8913 32 1 -0.8506 -6.8378 -5.5846 33 1 -1.4300 -8.4378 -5.0351 34 1 -2.8855 -6.3332 -6.6643 35 1 -3.0225 -8.1218 -6.7390 36 1 -4.8631 -6.5261 -5.3898 37 1 -4.4920 -8.2075 -4.8987 38 1 -2.7235 -5.5367 -1.6458 39 1 -1.1499 -4.8597 0.1214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355094200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -104.460897 kcal Electronic energy + Delta-G solvation = -24881.009490 eV Core-core repulsion = 21107.453246 eV Total energy + Delta-G solvation = -3773.556244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.21482 -39.79790 -38.29478 -37.81532 -36.92824 -36.48835 -34.33688 -34.13698 -32.22239 -30.40499 -28.75197 -28.70957 -24.78159 -24.59548 -24.34643 -22.27543 -21.12816 -20.55100 -19.32387 -19.00724 -18.53865 -17.83123 -17.71572 -17.27676 -16.89451 -16.38807 -16.01187 -15.41321 -15.35984 -15.18387 -14.86790 -14.76757 -14.63358 -14.57083 -14.29095 -14.09820 -13.78487 -13.57895 -13.42775 -13.21592 -13.12593 -12.73405 -12.57783 -12.56572 -12.43055 -12.13660 -12.07623 -11.96579 -11.45397 -11.42615 -10.90055 -10.81094 -10.20842 -10.13120 -9.36134 -8.25452 -6.38749 -0.58735 -0.31544 0.19091 1.30238 1.43972 1.47351 1.55163 1.60911 2.11170 2.40405 2.47418 2.81289 3.09289 3.16139 3.37405 3.48091 3.75256 3.79394 3.93992 4.04710 4.16329 4.27524 4.40855 4.57864 4.58782 4.59927 4.72637 4.81915 4.87629 4.96677 5.04234 5.06851 5.16678 5.25186 5.28576 5.29624 5.72729 5.79527 5.89085 5.96320 6.32176 6.76251 6.80228 7.31288 8.85589 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.003609 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.347625 B = 7757.484905 C = 8985.384684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.260 3.740 10 N -1.101 6.101 11 S 2.710 3.290 12 O -1.001 7.001 13 O -0.981 6.981 14 C -0.706 4.706 15 C 0.006 3.994 16 C -0.168 4.168 17 C 0.214 3.786 18 N -0.564 5.564 19 C 0.079 3.921 20 C -0.117 4.117 21 C -0.143 4.143 22 C 0.495 3.505 23 O -0.556 6.556 24 C -0.200 4.200 25 C -0.004 4.004 26 H 0.268 0.732 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.420 0.580 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -17.819 -18.258 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.096 0.904 9 C 0.135 3.865 10 N -0.863 5.863 11 S 2.802 3.198 12 O -0.991 6.991 13 O -0.972 6.972 14 C -0.796 4.796 15 C -0.014 4.014 16 C -0.189 4.189 17 C 0.117 3.883 18 N -0.286 5.286 19 C -0.041 4.041 20 C -0.154 4.154 21 C -0.183 4.183 22 C 0.287 3.713 23 O -0.434 6.434 24 C -0.222 4.222 25 C -0.024 4.024 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.255 0.745 30 H 0.186 0.814 31 H 0.199 0.801 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.763 -18.015 -17.034 25.077 hybrid contribution -0.113 1.387 0.093 1.394 sum -3.876 -16.628 -16.940 24.052 Atomic orbital electron populations 1.70079 1.07843 1.28480 1.50335 1.25954 0.95803 1.03419 0.94180 0.85343 0.78082 0.77319 0.79324 1.18635 1.20947 1.19295 1.21612 0.94261 0.90808 1.52300 0.90412 1.18633 0.88018 0.84609 0.95242 1.55228 1.19546 1.23497 1.87984 1.00959 0.72897 0.72076 0.73830 1.93511 1.73397 1.86671 1.45554 1.93501 1.50022 1.66099 1.87545 1.30673 1.10143 1.19108 1.19725 1.21079 1.01538 0.89478 0.89264 1.21215 0.89848 1.05604 1.02185 1.18201 0.90590 0.91870 0.87616 1.46350 1.06322 1.58339 1.17559 1.22830 1.00612 1.00804 0.79809 1.22705 0.89906 1.06558 0.96226 1.22442 1.00057 1.05311 0.90464 1.22399 0.82088 0.76475 0.90337 1.90653 1.68318 1.46273 1.38163 1.21633 1.02084 1.03480 0.94963 1.20823 0.91649 0.92362 0.97616 0.92300 0.97372 0.97383 0.74476 0.81406 0.80130 0.87717 0.87358 0.89002 0.84843 0.86600 0.85014 0.83828 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.55 -30.22 9.27 25.60 0.24 -29.98 16 8 H 0.08 3.96 7.65 -2.91 -0.02 3.94 16 9 C 0.26 13.61 5.97 85.63 0.51 14.13 16 10 N -1.10 -46.42 5.99 -190.80 -1.14 -47.56 16 11 S 2.71 107.05 5.74 -56.49 -0.32 106.72 16 12 O -1.00 -47.10 16.75 -128.00 -2.14 -49.24 16 13 O -0.98 -37.85 17.28 -128.00 -2.21 -40.06 16 14 C -0.71 -25.10 5.95 22.29 0.13 -24.96 16 15 C 0.01 0.17 9.51 22.25 0.21 0.39 16 16 C -0.17 -3.78 9.41 22.39 0.21 -3.56 16 17 C 0.21 5.85 6.60 38.15 0.25 6.11 16 18 N -0.56 -11.33 3.14 -627.69 -1.97 -13.30 16 19 C 0.08 0.60 6.26 86.83 0.54 1.14 16 20 C -0.12 -0.36 7.18 31.65 0.23 -0.13 16 21 C -0.14 -1.33 6.86 30.59 0.21 -1.12 16 22 C 0.50 11.20 7.92 87.90 0.70 11.90 16 23 O -0.56 -18.52 14.82 -3.04 -0.05 -18.56 16 24 C -0.20 -7.09 9.28 22.39 0.21 -6.88 16 25 C 0.00 -0.16 9.51 22.25 0.21 0.05 16 26 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 27 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.01 0.48 7.75 -2.39 -0.02 0.46 16 29 H 0.42 15.63 8.54 -96.75 -0.83 14.80 16 30 H 0.17 3.73 7.61 -2.91 -0.02 3.70 16 31 H 0.18 2.22 7.02 -2.91 -0.02 2.20 16 32 H 0.10 0.55 7.71 -2.39 -0.02 0.53 16 33 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.13 -0.45 8.14 -2.39 -0.02 -0.46 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.14 5.51 5.27 -2.91 -0.02 5.50 16 39 H 0.13 5.14 7.61 -2.91 -0.02 5.12 16 Total: -1.00 -82.81 343.37 -1.14 -83.95 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.27 Total: 20.14 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 4.11 Total: -32.14 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -2.83 Total: -115.78 kcal Atomic # 8 Polarization: -103.47 SS G_CDS: -4.40 Total: -107.87 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 107.05 SS G_CDS: -0.32 Total: 106.72 kcal Total: -82.81 -1.14 -83.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355094200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.513 kcal (2) G-P(sol) polarization free energy of solvation -82.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds