Wall clock time and date at job start Tue Mar 31 2020 14:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48492 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47235 * 300.00677 * 3 2 1 6 6 H 1.48503 * 109.46671 * 60.00560 * 3 2 1 7 7 C 1.39938 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 175.19763 * 7 2 1 9 9 C 1.41437 * 119.99901 * 355.20028 * 7 2 1 10 10 C 1.40781 * 120.17875 * 214.88732 * 9 7 2 11 11 C 1.37710 * 120.04905 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41054 * 359.72348 * 11 10 9 13 13 C 1.39902 * 120.35417 * 0.55763 * 12 11 10 14 14 C 1.47851 * 120.02482 * 179.71843 * 13 12 11 15 15 O 1.21567 * 119.99823 * 179.72740 * 14 13 12 16 16 N 1.34779 * 120.00258 * 359.72170 * 14 13 12 17 17 C 1.39959 * 120.00147 * 185.58681 * 16 14 13 18 18 C 1.38659 * 120.11617 * 24.82003 * 17 16 14 19 19 C 1.38539 * 120.36963 * 180.02562 * 18 17 16 20 20 C 1.37803 * 120.46910 * 0.02562 * 19 18 17 21 21 C 1.39639 * 119.86693 * 359.97438 * 20 19 18 22 22 N 1.36163 * 133.65836 * 179.97438 * 21 20 19 23 23 C 1.30625 * 108.72381 * 180.02562 * 22 21 20 24 24 O 1.35188 * 124.94475 * 180.02562 * 23 22 21 25 25 O 1.34365 * 110.11132 * 0.02562 * 23 22 21 26 26 C 1.35301 * 108.16833 * 359.97438 * 25 23 22 27 27 C 1.39048 * 119.94585 * 359.44150 * 13 12 11 28 28 H 0.96999 * 119.99771 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.97651 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.80025 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.82720 * 180.29665 * 12 11 10 32 32 H 0.97006 * 119.99787 * 5.59630 * 16 14 13 33 33 H 1.07998 * 119.81585 * 0.02562 * 18 17 16 34 34 H 1.08003 * 119.76412 * 180.02562 * 19 18 17 35 35 H 1.07993 * 120.06605 * 180.02562 * 20 19 18 36 36 H 0.96702 * 113.99928 * 359.97438 * 24 23 22 37 37 H 1.07998 * 120.20219 * 180.25442 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0081 -1.2119 -0.0005 8 1 3.0852 -1.2134 -0.0788 9 6 1.3046 -2.4347 0.1014 10 6 1.8661 -3.5177 0.8041 11 6 1.1791 -4.7072 0.9012 12 6 -0.0671 -4.8461 0.3161 13 6 -0.6385 -3.7829 -0.3912 14 6 -1.9678 -3.9414 -1.0188 15 8 -2.4661 -3.0156 -1.6291 16 7 -2.6270 -5.1123 -0.9145 17 6 -3.8296 -5.3023 -1.6049 18 6 -4.0974 -4.5688 -2.7508 19 6 -5.2863 -4.7522 -3.4379 20 6 -6.2176 -5.6647 -2.9918 21 6 -5.9631 -6.4112 -1.8394 22 7 -6.6629 -7.3631 -1.1625 23 6 -5.9603 -7.7448 -0.1295 24 8 -6.3469 -8.6796 0.7672 25 8 -4.7975 -7.0729 -0.0880 26 6 -4.7610 -6.2270 -1.1433 27 6 0.0421 -2.5752 -0.4985 28 1 -0.4850 0.8401 0.0004 29 1 2.8364 -3.4155 1.2673 30 1 1.6134 -5.5353 1.4416 31 1 -0.5997 -5.7818 0.4022 32 1 -2.2681 -5.8234 -0.3609 33 1 -3.3751 -3.8506 -3.1096 34 1 -5.4846 -4.1760 -4.3296 35 1 -7.1420 -5.8027 -3.5327 36 1 -7.2158 -9.0634 0.5855 37 1 -0.3970 -1.7503 -1.0400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356809854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:12 Heat of formation + Delta-G solvation = -2.515204 kcal Electronic energy + Delta-G solvation = -25630.717836 eV Core-core repulsion = 21726.138338 eV Total energy + Delta-G solvation = -3904.579498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.40362 -40.11195 -38.58576 -37.75322 -37.01201 -35.20147 -33.96206 -33.57979 -30.70712 -29.56835 -29.47972 -28.86536 -25.42021 -24.13224 -23.49956 -23.02369 -21.48063 -20.95818 -19.92654 -19.22860 -18.42869 -18.19006 -17.41354 -17.31000 -16.19869 -15.85805 -15.26444 -15.10643 -14.84725 -14.74523 -14.29581 -14.02905 -13.89099 -13.46451 -13.24317 -12.84361 -12.68133 -12.59400 -12.20759 -11.93372 -11.80298 -11.44317 -11.21540 -11.14786 -10.92285 -10.79182 -10.53991 -10.13184 -10.02697 -9.83303 -9.36710 -9.16334 -8.59461 -7.93741 -7.69849 -7.50690 -6.72162 -4.53545 0.69215 1.10763 1.38746 1.95550 2.32159 2.73365 3.05006 3.07373 3.11431 3.19888 3.34040 3.48885 3.78868 3.91273 4.31324 4.60113 4.67667 4.88642 5.20900 5.29127 5.35353 5.42828 5.44792 5.66053 5.88036 5.98714 6.12227 6.20438 6.28682 6.43666 6.57654 6.64629 6.81458 6.86625 6.91045 7.17414 7.26288 7.42342 7.51642 7.56242 7.73842 7.90603 8.09410 8.42771 8.54455 8.74042 8.78442 10.18796 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.002948 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.513458 B = 9494.540918 C =10452.192477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.068 3.932 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.462 4.462 8 H 0.080 0.920 9 C 0.092 3.908 10 C -0.193 4.193 11 C -0.105 4.105 12 C -0.204 4.204 13 C -0.139 4.139 14 C 0.567 3.433 15 O -0.516 6.516 16 N -0.675 5.675 17 C 0.210 3.790 18 C -0.124 4.124 19 C -0.081 4.081 20 C -0.105 4.105 21 C 0.071 3.929 22 N -0.525 5.525 23 C 0.447 3.553 24 O -0.416 6.416 25 O -0.200 6.200 26 C -0.037 4.037 27 C -0.075 4.075 28 H 0.282 0.718 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.414 0.586 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.439 0.561 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -11.703 -2.910 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.148 4.148 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.493 4.493 8 H 0.099 0.901 9 C 0.090 3.910 10 C -0.213 4.213 11 C -0.123 4.123 12 C -0.224 4.224 13 C -0.142 4.142 14 C 0.360 3.640 15 O -0.392 6.392 16 N -0.320 5.320 17 C 0.113 3.887 18 C -0.145 4.145 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.040 4.040 22 N -0.276 5.276 23 C 0.198 3.802 24 O -0.218 6.218 25 O -0.094 6.094 26 C -0.088 4.088 27 C -0.095 4.095 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.251 0.749 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.299 0.701 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.990 -11.032 -3.061 15.870 hybrid contribution 0.524 0.135 0.811 0.975 sum -10.466 -10.897 -2.250 15.276 Atomic orbital electron populations 1.69713 1.07262 1.29272 1.36578 1.25940 0.94990 1.01436 0.92457 0.86097 0.80457 0.80610 0.78575 1.18528 1.19808 1.19885 1.19570 0.94920 0.89844 1.44917 0.90146 1.17668 0.91874 0.92444 0.89008 1.21312 1.01075 0.94912 1.03991 1.20468 0.94862 0.96929 1.00058 1.20440 0.97880 0.97019 1.07069 1.19404 0.93010 0.97241 1.04526 1.19049 0.85632 0.80204 0.79110 1.90677 1.67801 1.39196 1.41544 1.43759 1.21345 1.18135 1.48751 1.16651 0.85252 0.94408 0.92421 1.21446 0.99654 1.00979 0.92396 1.20991 0.92618 0.96737 0.99695 1.20162 1.01039 0.96781 0.94512 1.19225 0.90437 0.96747 0.97619 1.71171 1.30576 1.18223 1.07679 1.22209 0.81645 0.88637 0.87726 1.84663 1.42911 1.49322 1.44860 1.84339 1.35963 1.45299 1.43764 1.19702 0.99254 0.99536 0.90310 1.21973 0.95448 0.94405 0.97688 0.90669 0.88241 0.88551 0.89151 0.74883 0.81592 0.84099 0.84705 0.70100 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 10.60 55.55 0.59 -20.19 16 2 C 0.07 1.69 5.42 -17.34 -0.09 1.59 16 3 Si 0.92 18.54 29.56 -169.99 -5.03 13.51 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -11.80 9.04 -37.73 -0.34 -12.14 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 9 C 0.09 2.35 5.55 -106.87 -0.59 1.76 16 10 C -0.19 -4.39 9.78 -38.81 -0.38 -4.77 16 11 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 12 C -0.20 -4.12 9.55 -38.91 -0.37 -4.49 16 13 C -0.14 -3.12 5.87 -105.04 -0.62 -3.74 16 14 C 0.57 11.82 7.58 -12.33 -0.09 11.73 16 15 O -0.52 -11.81 13.50 5.31 0.07 -11.74 16 16 N -0.68 -11.64 5.31 -10.68 -0.06 -11.69 16 17 C 0.21 3.42 6.43 -83.66 -0.54 2.88 16 18 C -0.12 -1.88 8.71 -39.31 -0.34 -2.23 16 19 C -0.08 -0.97 10.01 -39.63 -0.40 -1.37 16 20 C -0.10 -1.26 10.10 -39.22 -0.40 -1.66 16 21 C 0.07 1.01 7.23 -84.71 -0.61 0.40 16 22 N -0.53 -6.86 11.38 -12.81 -0.15 -7.01 16 23 C 0.45 5.48 9.54 52.25 0.50 5.98 16 24 O -0.42 -3.38 13.62 -40.55 -0.55 -3.93 16 25 O -0.20 -2.94 10.79 -20.58 -0.22 -3.16 16 26 C -0.04 -0.57 7.31 -38.54 -0.28 -0.85 16 27 C -0.07 -1.91 8.22 -38.44 -0.32 -2.23 16 28 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 29 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.52 6.39 -52.49 -0.34 1.18 16 32 H 0.41 6.35 6.82 -40.82 -0.28 6.07 16 33 H 0.17 2.77 5.77 -52.49 -0.30 2.47 16 34 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.44 1.03 9.06 45.56 0.41 1.45 16 37 H 0.15 4.05 5.72 -52.49 -0.30 3.75 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -30.66 328.56 -7.70 -38.36 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -2.04 Total: 12.59 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -5.27 Total: -11.68 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.39 Total: -38.90 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.70 Total: -18.84 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.66 -7.70 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356809854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.848 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds