Wall clock time and date at job start Tue Mar 31 2020 14:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48492 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47235 * 300.00677 * 3 2 1 6 6 H 1.48503 * 109.46671 * 60.00560 * 3 2 1 7 7 C 1.39938 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 175.19763 * 7 2 1 9 9 C 1.41437 * 119.99901 * 355.20028 * 7 2 1 10 10 C 1.40781 * 120.17875 * 214.88732 * 9 7 2 11 11 C 1.37710 * 120.04905 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41054 * 359.72348 * 11 10 9 13 13 C 1.39902 * 120.35417 * 0.55763 * 12 11 10 14 14 C 1.47851 * 120.02482 * 179.71843 * 13 12 11 15 15 O 1.21567 * 119.99823 * 179.72740 * 14 13 12 16 16 N 1.34779 * 120.00258 * 359.72170 * 14 13 12 17 17 C 1.39959 * 120.00147 * 185.58681 * 16 14 13 18 18 C 1.38659 * 120.11617 * 24.82003 * 17 16 14 19 19 C 1.38539 * 120.36963 * 180.02562 * 18 17 16 20 20 C 1.37803 * 120.46910 * 0.02562 * 19 18 17 21 21 C 1.39639 * 119.86693 * 359.97438 * 20 19 18 22 22 N 1.36163 * 133.65836 * 179.97438 * 21 20 19 23 23 C 1.30625 * 108.72381 * 180.02562 * 22 21 20 24 24 O 1.35188 * 124.94475 * 180.02562 * 23 22 21 25 25 O 1.34365 * 110.11132 * 0.02562 * 23 22 21 26 26 C 1.35301 * 108.16833 * 359.97438 * 25 23 22 27 27 C 1.39048 * 119.94585 * 359.44150 * 13 12 11 28 28 H 0.96999 * 119.99771 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.97651 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.80025 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.82720 * 180.29665 * 12 11 10 32 32 H 0.97006 * 119.99787 * 5.59630 * 16 14 13 33 33 H 1.07998 * 119.81585 * 0.02562 * 18 17 16 34 34 H 1.08003 * 119.76412 * 180.02562 * 19 18 17 35 35 H 1.07993 * 120.06605 * 180.02562 * 20 19 18 36 36 H 0.96702 * 113.99928 * 359.97438 * 24 23 22 37 37 H 1.07998 * 120.20219 * 180.25442 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0081 -1.2119 -0.0005 8 1 3.0852 -1.2134 -0.0788 9 6 1.3046 -2.4347 0.1014 10 6 1.8661 -3.5177 0.8041 11 6 1.1791 -4.7072 0.9012 12 6 -0.0671 -4.8461 0.3161 13 6 -0.6385 -3.7829 -0.3912 14 6 -1.9678 -3.9414 -1.0188 15 8 -2.4661 -3.0156 -1.6291 16 7 -2.6270 -5.1123 -0.9145 17 6 -3.8296 -5.3023 -1.6049 18 6 -4.0974 -4.5688 -2.7508 19 6 -5.2863 -4.7522 -3.4379 20 6 -6.2176 -5.6647 -2.9918 21 6 -5.9631 -6.4112 -1.8394 22 7 -6.6629 -7.3631 -1.1625 23 6 -5.9603 -7.7448 -0.1295 24 8 -6.3469 -8.6796 0.7672 25 8 -4.7975 -7.0729 -0.0880 26 6 -4.7610 -6.2270 -1.1433 27 6 0.0421 -2.5752 -0.4985 28 1 -0.4850 0.8401 0.0004 29 1 2.8364 -3.4155 1.2673 30 1 1.6134 -5.5353 1.4416 31 1 -0.5997 -5.7818 0.4022 32 1 -2.2681 -5.8234 -0.3609 33 1 -3.3751 -3.8506 -3.1096 34 1 -5.4846 -4.1760 -4.3296 35 1 -7.1420 -5.8027 -3.5327 36 1 -7.2158 -9.0634 0.5855 37 1 -0.3970 -1.7503 -1.0400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356809854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:12 Heat of formation + Delta-G solvation = -26.040844 kcal Electronic energy + Delta-G solvation = -25631.737985 eV Core-core repulsion = 21726.138338 eV Total energy + Delta-G solvation = -3905.599646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.43909 -41.58757 -39.58989 -39.03915 -38.41136 -36.48681 -35.58721 -34.92782 -32.33210 -31.34010 -30.61622 -30.09775 -27.24407 -25.37374 -24.70229 -24.17022 -22.95539 -22.52958 -21.41704 -20.11328 -19.89409 -19.33692 -18.84745 -18.39018 -17.64267 -17.24664 -16.82871 -16.46665 -16.22410 -16.14467 -15.70810 -15.27308 -15.07017 -14.77967 -14.59679 -14.44214 -14.34253 -13.72115 -13.57480 -13.27718 -12.99550 -12.87245 -12.84284 -12.61836 -12.47640 -12.19347 -11.99324 -11.84607 -11.56448 -11.29229 -11.14217 -10.77873 -9.68749 -9.56987 -9.31901 -8.98215 -8.53328 -6.45185 -0.38803 -0.02291 0.33602 0.49329 0.98086 1.24457 1.39032 1.45275 1.54561 1.81181 1.96165 2.22305 2.36872 2.59229 2.80525 3.34877 3.59933 3.64818 3.73008 3.98767 4.22879 4.30512 4.35002 4.37695 4.50566 4.63029 4.82401 4.89773 5.05983 5.11331 5.16200 5.25866 5.33511 5.36560 5.48040 5.57247 5.79152 5.83799 5.95502 6.05100 6.21759 6.29331 6.53887 6.57996 6.89257 6.92076 6.99167 8.38897 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.002948 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.513458 B = 9494.540918 C =10452.192477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.082 0.918 9 C 0.060 3.940 10 C -0.196 4.196 11 C -0.103 4.103 12 C -0.186 4.186 13 C -0.147 4.147 14 C 0.567 3.433 15 O -0.547 6.547 16 N -0.661 5.661 17 C 0.182 3.818 18 C -0.136 4.136 19 C -0.071 4.071 20 C -0.091 4.091 21 C 0.060 3.940 22 N -0.529 5.529 23 C 0.456 3.544 24 O -0.404 6.404 25 O -0.215 6.215 26 C -0.049 4.049 27 C -0.109 4.109 28 H 0.283 0.717 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.422 0.578 33 H 0.145 0.855 34 H 0.175 0.825 35 H 0.168 0.832 36 H 0.462 0.538 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 -13.911 -2.626 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.189 4.189 3 Si 0.811 3.189 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.527 4.527 8 H 0.100 0.900 9 C 0.058 3.942 10 C -0.216 4.216 11 C -0.121 4.121 12 C -0.206 4.206 13 C -0.150 4.150 14 C 0.359 3.641 15 O -0.425 6.425 16 N -0.306 5.306 17 C 0.086 3.914 18 C -0.157 4.157 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.051 4.051 22 N -0.281 5.281 23 C 0.207 3.793 24 O -0.210 6.210 25 O -0.110 6.110 26 C -0.100 4.100 27 C -0.130 4.130 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.261 0.739 33 H 0.163 0.837 34 H 0.193 0.807 35 H 0.185 0.815 36 H 0.327 0.673 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.169 -13.321 -2.769 18.254 hybrid contribution 0.706 0.512 0.751 1.150 sum -11.463 -12.809 -2.018 17.308 Atomic orbital electron populations 1.69855 1.08833 1.29978 1.38301 1.26834 0.95668 1.04756 0.91612 0.85035 0.79303 0.76027 0.78577 1.17644 1.19454 1.19383 1.19831 0.95142 0.90860 1.46909 0.89968 1.18005 0.92412 0.93645 0.90132 1.21599 1.01717 0.95029 1.03257 1.20935 0.94518 0.97226 0.99393 1.20926 0.97762 0.97550 1.04347 1.19655 0.93780 0.97000 1.04614 1.18828 0.85386 0.80953 0.78896 1.90662 1.68429 1.40530 1.42899 1.43423 1.21612 1.16963 1.48575 1.16780 0.85272 0.96061 0.93322 1.21445 1.00675 1.00701 0.92867 1.21316 0.91029 0.96575 1.00147 1.20578 1.01795 0.95188 0.93510 1.19651 0.90106 0.97159 0.98202 1.71207 1.30438 1.18362 1.08061 1.22481 0.80705 0.88381 0.87757 1.84704 1.44718 1.47978 1.43575 1.84299 1.37230 1.45674 1.43819 1.19652 0.99592 0.99788 0.90954 1.21744 0.96603 0.95069 0.99589 0.90637 0.86841 0.84169 0.85085 0.73944 0.83709 0.80724 0.81458 0.67271 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.36 10.60 21.83 0.23 -46.12 16 2 C 0.02 1.20 5.42 85.25 0.46 1.66 16 3 Si 0.99 39.32 29.56 68.60 2.03 41.35 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.50 -26.53 9.04 23.47 0.21 -26.32 16 8 H 0.08 4.16 7.85 -2.91 -0.02 4.13 16 9 C 0.06 3.18 5.55 -21.32 -0.12 3.06 16 10 C -0.20 -8.88 9.78 22.77 0.22 -8.65 16 11 C -0.10 -3.96 10.01 22.18 0.22 -3.73 16 12 C -0.19 -7.21 9.55 22.70 0.22 -6.99 16 13 C -0.15 -6.79 5.87 -20.14 -0.12 -6.90 16 14 C 0.57 24.42 7.58 86.79 0.66 25.08 16 15 O -0.55 -26.51 13.50 -3.93 -0.05 -26.56 16 16 N -0.66 -22.81 5.31 -305.98 -1.63 -24.43 16 17 C 0.18 5.90 6.43 38.16 0.25 6.14 16 18 C -0.14 -4.15 8.71 22.44 0.20 -3.96 16 19 C -0.07 -1.58 10.01 22.24 0.22 -1.36 16 20 C -0.09 -1.94 10.10 22.51 0.23 -1.71 16 21 C 0.06 1.59 7.23 39.27 0.28 1.87 16 22 N -0.53 -12.51 11.38 -422.78 -4.81 -17.32 16 23 C 0.46 10.13 9.54 130.42 1.24 11.38 16 24 O -0.40 -5.39 13.62 -62.41 -0.85 -6.24 16 25 O -0.22 -6.02 10.79 9.04 0.10 -5.93 16 26 C -0.05 -1.46 7.31 22.94 0.17 -1.30 16 27 C -0.11 -5.89 8.22 23.01 0.19 -5.71 16 28 H 0.28 14.40 8.30 -92.71 -0.77 13.63 16 29 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.13 3.96 6.39 -2.91 -0.02 3.94 16 32 H 0.42 12.50 6.82 -92.70 -0.63 11.87 16 33 H 0.15 5.08 5.77 -2.91 -0.02 5.07 16 34 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.46 0.64 9.06 -74.06 -0.67 -0.03 16 37 H 0.11 6.85 5.72 -2.91 -0.02 6.83 16 Total: -1.00 -71.04 328.56 -0.57 -71.61 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.12 Total: 31.08 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.53 Total: -17.43 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -6.20 Total: -87.88 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.81 Total: -38.73 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -71.04 -0.57 -71.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356809854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.564 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds