Wall clock time and date at job start Tue Mar 31 2020 14:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47325 * 239.99666 * 3 2 1 5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46824 * 119.99628 * 3 2 1 7 7 C 1.40224 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00170 * 175.20789 * 7 2 1 9 9 C 1.41091 * 120.00175 * 355.21032 * 7 2 1 10 10 C 1.40899 * 120.10209 * 214.91822 * 9 7 2 11 11 C 1.36298 * 119.89361 * 180.02562 * 10 9 7 12 12 C 1.40036 * 120.10537 * 0.02562 * 11 10 9 13 13 C 1.47585 * 119.89767 * 179.97438 * 12 11 10 14 14 O 1.21612 * 120.00214 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.39902 * 120.00097 * 185.58581 * 15 13 12 17 17 C 1.38688 * 120.12369 * 24.82292 * 16 15 13 18 18 C 1.38529 * 120.37669 * 180.02562 * 17 16 15 19 19 C 1.37808 * 120.46180 * 359.78744 * 18 17 16 20 20 C 1.39641 * 119.87750 * 0.41547 * 19 18 17 21 21 N 1.36156 * 133.65511 * 179.89792 * 20 19 18 22 22 C 1.30633 * 108.72133 * 179.71825 * 21 20 19 23 23 O 1.35196 * 124.94634 * 180.02562 * 22 21 20 24 24 O 1.34362 * 110.10820 * 0.02562 * 22 21 20 25 25 C 1.35299 * 108.16941 * 359.97438 * 24 22 21 26 26 C 1.40042 * 120.20606 * 0.25192 * 12 11 10 27 27 C 1.36306 * 120.10413 * 359.48675 * 26 12 11 28 28 H 0.97000 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.04908 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.94455 * 179.97438 * 11 10 9 31 31 H 0.97004 * 120.00101 * 5.58919 * 15 13 12 32 32 H 1.08000 * 119.80930 * 0.04024 * 17 16 15 33 33 H 1.07997 * 119.76816 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.05826 * 180.02562 * 19 18 17 35 35 H 0.96708 * 113.99826 * 359.94328 * 23 22 21 36 36 H 1.07996 * 119.94660 * 179.72248 * 26 12 11 37 37 H 1.07999 * 120.05303 * 180.23656 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0076 -1.2144 0.0005 8 1 3.0848 -1.2161 -0.0776 9 6 1.3059 -2.4341 0.1031 10 6 1.8690 -3.5162 0.8083 11 6 1.1876 -4.6927 0.9043 12 6 -0.0699 -4.8272 0.3030 13 6 -0.8035 -6.1034 0.4093 14 8 -0.3160 -7.0361 1.0187 15 7 -2.0141 -6.2350 -0.1682 16 6 -2.7605 -7.4016 0.0299 17 6 -2.5538 -8.1765 1.1614 18 6 -3.2895 -9.3329 1.3625 19 6 -4.2387 -9.7257 0.4439 20 6 -4.4562 -8.9589 -0.7028 21 7 -5.2958 -9.0783 -1.7680 22 6 -5.0970 -8.0695 -2.5737 23 8 -5.7581 -7.8638 -3.7349 24 8 -4.1398 -7.2659 -2.0803 25 6 -3.7126 -7.7892 -0.9080 26 6 -0.6311 -3.7564 -0.4039 27 6 0.0406 -2.5742 -0.5007 28 1 -0.4850 0.8400 -0.0004 29 1 2.8390 -3.4135 1.2720 30 1 1.6186 -5.5228 1.4442 31 1 -2.3679 -5.5209 -0.7212 32 1 -1.8151 -7.8765 1.8899 33 1 -3.1208 -9.9287 2.2473 34 1 -4.8089 -10.6282 0.6074 35 1 -6.4158 -8.5429 -3.9387 36 1 -1.5992 -3.8662 -0.8698 37 1 -0.3947 -1.7477 -1.0427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356837080.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:58 Heat of formation + Delta-G solvation = -6.693592 kcal Electronic energy + Delta-G solvation = -25392.197287 eV Core-core repulsion = 21487.436601 eV Total energy + Delta-G solvation = -3904.760686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.37691 -40.02770 -38.55651 -37.77048 -37.05749 -35.15242 -33.96206 -33.71683 -30.67886 -29.61209 -29.44086 -28.97300 -26.03215 -23.97219 -23.32340 -22.69353 -21.48314 -20.94929 -19.96875 -19.20536 -18.27605 -18.11100 -17.58698 -17.35275 -16.48715 -15.97381 -15.47611 -15.10999 -14.79090 -14.41309 -14.13647 -14.09630 -13.86570 -13.44947 -13.24805 -12.89715 -12.59102 -12.30881 -12.21192 -11.98474 -11.85713 -11.61088 -11.42680 -11.28155 -11.02826 -10.89441 -10.69774 -10.13029 -10.03465 -9.67109 -9.50345 -9.16082 -8.57077 -7.89223 -7.80913 -7.51858 -6.97491 -4.73928 0.71769 1.13307 1.41579 1.98531 2.33803 2.88804 2.91352 2.92544 2.94832 3.29311 3.36616 3.51260 3.71773 3.82379 4.33953 4.48794 4.70202 4.91640 5.22659 5.34119 5.39188 5.40574 5.50823 5.77775 5.88510 5.99737 6.17249 6.23707 6.31766 6.45651 6.65862 6.68057 6.77359 6.85536 6.91688 7.02568 7.34328 7.44885 7.45454 7.63368 7.77463 7.85984 7.98322 8.32625 8.55603 8.63435 8.66506 9.90585 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002722 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.354009 B =10285.415932 C =11441.423885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.228 4.228 11 C -0.024 4.024 12 C -0.278 4.278 13 C 0.572 3.428 14 O -0.548 6.548 15 N -0.678 5.678 16 C 0.214 3.786 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.107 4.107 20 C 0.072 3.928 21 N -0.526 5.526 22 C 0.447 3.553 23 O -0.416 6.416 24 O -0.199 6.199 25 C -0.039 4.039 26 C -0.068 4.068 27 C -0.165 4.165 28 H 0.286 0.714 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.413 0.587 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.439 0.561 36 H 0.089 0.911 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -10.470 -2.434 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.150 4.150 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.248 4.248 11 C -0.043 4.043 12 C -0.283 4.283 13 C 0.370 3.630 14 O -0.429 6.429 15 N -0.321 5.321 16 C 0.116 3.884 17 C -0.147 4.147 18 C -0.101 4.101 19 C -0.128 4.128 20 C -0.040 4.040 21 N -0.277 5.277 22 C 0.198 3.802 23 O -0.217 6.217 24 O -0.093 6.093 25 C -0.090 4.090 26 C -0.087 4.087 27 C -0.184 4.184 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.250 0.750 32 H 0.184 0.816 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.299 0.701 36 H 0.107 0.893 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.672 -10.726 -2.289 14.623 hybrid contribution -0.009 1.364 -0.553 1.472 sum -9.682 -9.362 -2.842 13.764 Atomic orbital electron populations 1.69657 1.07667 1.29870 1.34026 1.26093 0.95048 1.01830 0.92036 0.86117 0.79876 0.79186 0.80199 1.18641 1.20064 1.18669 1.19796 0.95325 0.90183 1.41937 0.89784 1.17885 0.91781 0.91724 0.86118 1.20866 1.01795 0.95112 1.07013 1.20370 0.92387 0.96377 0.95144 1.18810 0.99503 0.93134 1.16834 1.18779 0.78739 0.88637 0.76847 1.90611 1.67776 1.41232 1.43260 1.43727 1.18804 1.17304 1.52289 1.16673 0.90595 0.90001 0.91168 1.21434 1.01884 0.95404 0.95982 1.20975 0.94141 0.96083 0.98915 1.20142 1.00435 1.00414 0.91782 1.19223 0.94664 0.94816 0.95283 1.71172 1.28302 1.22802 1.05473 1.22220 0.86156 0.84092 0.87721 1.84672 1.53440 1.53321 1.30290 1.84344 1.45705 1.46771 1.32493 1.19730 1.04670 0.97551 0.87052 1.20571 0.97250 0.93691 0.97190 1.21284 0.97510 0.96350 1.03279 0.90291 0.87997 0.87735 0.74999 0.81642 0.84238 0.84794 0.70127 0.89253 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.58 10.59 55.56 0.59 -17.99 16 2 C 0.07 1.58 5.43 -17.31 -0.09 1.49 16 3 Si 0.92 17.17 29.56 -169.99 -5.03 12.15 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.44 -10.75 9.03 -37.75 -0.34 -11.09 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.13 3.15 5.55 -106.80 -0.59 2.56 16 10 C -0.23 -5.26 9.73 -39.27 -0.38 -5.65 16 11 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 12 C -0.28 -6.04 5.89 -104.73 -0.62 -6.66 16 13 C 0.57 11.53 7.57 -12.45 -0.09 11.44 16 14 O -0.55 -11.74 13.48 5.27 0.07 -11.67 16 15 N -0.68 -11.78 5.31 -10.76 -0.06 -11.84 16 16 C 0.21 3.49 6.43 -83.67 -0.54 2.95 16 17 C -0.13 -1.90 8.71 -39.31 -0.34 -2.24 16 18 C -0.08 -0.97 10.01 -39.63 -0.40 -1.36 16 19 C -0.11 -1.30 10.09 -39.22 -0.40 -1.69 16 20 C 0.07 1.03 7.23 -84.72 -0.61 0.41 16 21 N -0.53 -6.97 11.38 -12.81 -0.15 -7.12 16 22 C 0.45 5.61 9.54 52.25 0.50 6.11 16 23 O -0.42 -3.52 13.62 -40.57 -0.55 -4.07 16 24 O -0.20 -3.00 10.78 -20.56 -0.22 -3.23 16 25 C -0.04 -0.61 7.31 -38.54 -0.28 -0.89 16 26 C -0.07 -1.46 9.47 -39.60 -0.37 -1.83 16 27 C -0.16 -3.93 8.61 -39.27 -0.34 -4.26 16 28 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 29 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 30 H 0.10 2.20 7.63 -52.49 -0.40 1.80 16 31 H 0.41 6.60 6.80 -40.82 -0.28 6.33 16 32 H 0.17 2.70 5.77 -52.49 -0.30 2.40 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.44 1.15 9.06 45.56 0.41 1.56 16 36 H 0.09 1.65 6.39 -52.49 -0.34 1.31 16 37 H 0.13 3.24 6.13 -52.49 -0.32 2.92 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -29.18 328.29 -7.72 -36.90 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -2.04 Total: 13.53 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -5.28 Total: -11.61 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.39 Total: -36.94 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.70 Total: -18.97 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.18 -7.72 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356837080.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.205 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds