Wall clock time and date at job start Tue Mar 31 2020 14:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47325 * 239.99666 * 3 2 1 5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46824 * 119.99628 * 3 2 1 7 7 C 1.40224 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00170 * 175.20789 * 7 2 1 9 9 C 1.41091 * 120.00175 * 355.21032 * 7 2 1 10 10 C 1.40899 * 120.10209 * 214.91822 * 9 7 2 11 11 C 1.36298 * 119.89361 * 180.02562 * 10 9 7 12 12 C 1.40036 * 120.10537 * 0.02562 * 11 10 9 13 13 C 1.47585 * 119.89767 * 179.97438 * 12 11 10 14 14 O 1.21612 * 120.00214 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.39902 * 120.00097 * 185.58581 * 15 13 12 17 17 C 1.38688 * 120.12369 * 24.82292 * 16 15 13 18 18 C 1.38529 * 120.37669 * 180.02562 * 17 16 15 19 19 C 1.37808 * 120.46180 * 359.78744 * 18 17 16 20 20 C 1.39641 * 119.87750 * 0.41547 * 19 18 17 21 21 N 1.36156 * 133.65511 * 179.89792 * 20 19 18 22 22 C 1.30633 * 108.72133 * 179.71825 * 21 20 19 23 23 O 1.35196 * 124.94634 * 180.02562 * 22 21 20 24 24 O 1.34362 * 110.10820 * 0.02562 * 22 21 20 25 25 C 1.35299 * 108.16941 * 359.97438 * 24 22 21 26 26 C 1.40042 * 120.20606 * 0.25192 * 12 11 10 27 27 C 1.36306 * 120.10413 * 359.48675 * 26 12 11 28 28 H 0.97000 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.04908 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.94455 * 179.97438 * 11 10 9 31 31 H 0.97004 * 120.00101 * 5.58919 * 15 13 12 32 32 H 1.08000 * 119.80930 * 0.04024 * 17 16 15 33 33 H 1.07997 * 119.76816 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.05826 * 180.02562 * 19 18 17 35 35 H 0.96708 * 113.99826 * 359.94328 * 23 22 21 36 36 H 1.07996 * 119.94660 * 179.72248 * 26 12 11 37 37 H 1.07999 * 120.05303 * 180.23656 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0076 -1.2144 0.0005 8 1 3.0848 -1.2161 -0.0776 9 6 1.3059 -2.4341 0.1031 10 6 1.8690 -3.5162 0.8083 11 6 1.1876 -4.6927 0.9043 12 6 -0.0699 -4.8272 0.3030 13 6 -0.8035 -6.1034 0.4093 14 8 -0.3160 -7.0361 1.0187 15 7 -2.0141 -6.2350 -0.1682 16 6 -2.7605 -7.4016 0.0299 17 6 -2.5538 -8.1765 1.1614 18 6 -3.2895 -9.3329 1.3625 19 6 -4.2387 -9.7257 0.4439 20 6 -4.4562 -8.9589 -0.7028 21 7 -5.2958 -9.0783 -1.7680 22 6 -5.0970 -8.0695 -2.5737 23 8 -5.7581 -7.8638 -3.7349 24 8 -4.1398 -7.2659 -2.0803 25 6 -3.7126 -7.7892 -0.9080 26 6 -0.6311 -3.7564 -0.4039 27 6 0.0406 -2.5742 -0.5007 28 1 -0.4850 0.8400 -0.0004 29 1 2.8390 -3.4135 1.2720 30 1 1.6186 -5.5228 1.4442 31 1 -2.3679 -5.5209 -0.7212 32 1 -1.8151 -7.8765 1.8899 33 1 -3.1208 -9.9287 2.2473 34 1 -4.8089 -10.6282 0.6074 35 1 -6.4158 -8.5429 -3.9387 36 1 -1.5992 -3.8662 -0.8698 37 1 -0.3947 -1.7477 -1.0427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356837080.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:58 Heat of formation + Delta-G solvation = -28.113413 kcal Electronic energy + Delta-G solvation = -25393.126120 eV Core-core repulsion = 21487.436601 eV Total energy + Delta-G solvation = -3905.689520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.42175 -41.47642 -39.60392 -39.08477 -38.39826 -36.40763 -35.66310 -34.92567 -32.29706 -31.36949 -30.62683 -30.16882 -27.72353 -25.04604 -24.51830 -23.99992 -23.01777 -22.52779 -21.41670 -20.10489 -19.54982 -19.39400 -19.22839 -18.39083 -17.85098 -17.32876 -16.95645 -16.16016 -16.10596 -15.87824 -15.79372 -15.24426 -15.07236 -14.76936 -14.58528 -14.43418 -13.97861 -13.73902 -13.65312 -13.42589 -13.16458 -12.91954 -12.84214 -12.68034 -12.48565 -12.37638 -11.94920 -11.77522 -11.44144 -11.25716 -11.16956 -10.71627 -9.66004 -9.62515 -9.38693 -8.93642 -8.68595 -6.56153 -0.35317 0.01726 0.37346 0.51359 1.09500 1.25075 1.39881 1.44222 1.51716 1.93605 2.01558 2.17575 2.38860 2.60490 2.78101 3.37270 3.59101 3.72140 3.80419 4.09838 4.21553 4.27971 4.33187 4.40504 4.44944 4.65462 4.89645 4.90554 5.02511 5.09420 5.18637 5.26575 5.31376 5.39140 5.56811 5.61506 5.73503 5.86901 5.97205 5.98485 6.19784 6.33378 6.52935 6.54913 6.76600 6.83849 7.10501 8.21840 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002722 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.354009 B =10285.415932 C =11441.423885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.031 3.969 3 Si 0.993 3.007 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.476 4.476 8 H 0.086 0.914 9 C 0.101 3.899 10 C -0.239 4.239 11 C -0.031 4.031 12 C -0.282 4.282 13 C 0.576 3.424 14 O -0.564 6.564 15 N -0.670 5.670 16 C 0.183 3.817 17 C -0.135 4.135 18 C -0.070 4.070 19 C -0.094 4.094 20 C 0.059 3.941 21 N -0.529 5.529 22 C 0.454 3.546 23 O -0.406 6.406 24 O -0.218 6.218 25 C -0.054 4.054 26 C -0.062 4.062 27 C -0.186 4.186 28 H 0.293 0.707 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.417 0.583 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.462 0.538 36 H 0.117 0.883 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 -11.685 -2.493 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.185 4.185 3 Si 0.813 3.187 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.505 4.505 8 H 0.105 0.895 9 C 0.098 3.902 10 C -0.258 4.258 11 C -0.050 4.050 12 C -0.287 4.287 13 C 0.373 3.627 14 O -0.445 6.445 15 N -0.314 5.314 16 C 0.087 3.913 17 C -0.156 4.156 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.052 4.052 21 N -0.281 5.281 22 C 0.205 3.795 23 O -0.211 6.211 24 O -0.113 6.113 25 C -0.105 4.105 26 C -0.081 4.081 27 C -0.205 4.205 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.255 0.745 32 H 0.168 0.832 33 H 0.195 0.805 34 H 0.184 0.816 35 H 0.327 0.673 36 H 0.135 0.865 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.054 -11.990 -2.377 16.481 hybrid contribution 0.220 1.535 -0.590 1.660 sum -10.835 -10.455 -2.967 15.346 Atomic orbital electron populations 1.69712 1.08941 1.31089 1.34325 1.26938 0.95801 1.04740 0.91042 0.85068 0.78563 0.74879 0.80192 1.18097 1.19149 1.18463 1.20059 0.95690 0.91033 1.43684 0.89548 1.18220 0.92554 0.92551 0.86872 1.21027 1.02401 0.95188 1.07204 1.20545 0.92748 0.96419 0.95269 1.19081 0.99516 0.94008 1.16079 1.18481 0.79453 0.87800 0.77002 1.90600 1.68436 1.41449 1.44052 1.43471 1.18030 1.18133 1.51728 1.16859 0.91749 0.90184 0.92521 1.21476 1.02188 0.96526 0.95389 1.21334 0.92805 0.94868 0.99925 1.20580 0.99749 1.00684 0.90393 1.19673 0.94634 0.94677 0.96227 1.71202 1.28365 1.23050 1.05448 1.22501 0.85451 0.83283 0.88294 1.84708 1.53610 1.54472 1.28313 1.84304 1.46652 1.47684 1.32675 1.19750 1.05035 0.98364 0.87328 1.20788 0.98053 0.92762 0.96472 1.21274 0.98010 0.96945 1.04274 0.89606 0.87032 0.86781 0.74544 0.83193 0.80526 0.81568 0.67311 0.86538 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.21 10.59 21.87 0.23 -38.98 16 2 C 0.03 1.44 5.43 85.35 0.46 1.90 16 3 Si 0.99 35.12 29.56 68.60 2.03 37.15 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.48 -23.71 9.03 23.45 0.21 -23.49 16 8 H 0.09 4.08 7.85 -2.91 -0.02 4.06 16 9 C 0.10 5.14 5.55 -21.28 -0.12 5.02 16 10 C -0.24 -11.30 9.73 22.47 0.22 -11.09 16 11 C -0.03 -1.39 9.52 22.25 0.21 -1.17 16 12 C -0.28 -12.41 5.89 -19.94 -0.12 -12.52 16 13 C 0.58 23.35 7.57 86.71 0.66 24.00 16 14 O -0.56 -24.23 13.48 -4.07 -0.05 -24.28 16 15 N -0.67 -23.33 5.31 -306.21 -1.63 -24.95 16 16 C 0.18 5.92 6.43 38.18 0.25 6.16 16 17 C -0.13 -3.92 8.71 22.45 0.20 -3.73 16 18 C -0.07 -1.46 10.01 22.24 0.22 -1.24 16 19 C -0.09 -1.97 10.09 22.51 0.23 -1.74 16 20 C 0.06 1.58 7.23 39.27 0.28 1.86 16 21 N -0.53 -12.85 11.38 -422.77 -4.81 -17.66 16 22 C 0.45 10.61 9.54 130.42 1.24 11.85 16 23 O -0.41 -5.94 13.62 -62.50 -0.85 -6.80 16 24 O -0.22 -6.42 10.78 9.09 0.10 -6.32 16 25 C -0.05 -1.64 7.31 22.95 0.17 -1.48 16 26 C -0.06 -2.69 9.47 22.26 0.21 -2.48 16 27 C -0.19 -9.11 8.61 22.47 0.19 -8.92 16 28 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 29 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.11 4.85 7.63 -2.91 -0.02 4.83 16 31 H 0.42 13.37 6.80 -92.71 -0.63 12.74 16 32 H 0.15 4.86 5.77 -2.91 -0.02 4.84 16 33 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.46 1.15 9.06 -74.05 -0.67 0.48 16 36 H 0.12 4.30 6.39 -2.91 -0.02 4.28 16 37 H 0.12 6.16 6.13 -2.91 -0.02 6.14 16 Total: -1.00 -64.16 328.29 -0.58 -64.75 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.12 Total: 34.15 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 4.52 Total: -17.06 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -6.20 Total: -81.59 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.81 Total: -37.40 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -64.16 -0.58 -64.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356837080.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.634 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds