Wall clock time and date at job start Tue Mar 31 2020 13:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46952 * 2 1 4 4 C 1.53000 * 109.47012 * 240.00011 * 2 1 3 5 5 C 1.50700 * 109.47359 * 120.00065 * 2 1 3 6 6 C 1.32613 * 123.42259 * 0.02562 * 5 2 1 7 7 S 1.75469 * 110.77747 * 179.97438 * 6 5 2 8 8 C 1.70440 * 92.52283 * 0.02562 * 7 6 5 9 9 N 1.38802 * 124.64996 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99508 * 0.02562 * 9 8 7 11 11 O 1.21280 * 120.00459 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99473 * 180.02562 * 10 9 8 13 13 S 1.81007 * 109.46861 * 180.02562 * 12 10 9 14 14 C 1.76200 * 100.00045 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99805 * 0.02562 * 14 13 12 16 16 C 1.38799 * 120.00100 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99766 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99857 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47070 * 89.99844 * 18 16 14 20 20 H 1.48500 * 109.46940 * 209.99552 * 18 16 14 21 21 H 1.48503 * 109.47204 * 329.99545 * 18 16 14 22 22 C 1.36985 * 110.70720 * 359.97438 * 8 7 6 23 23 C 1.43201 * 123.58134 * 180.02562 * 22 8 7 24 24 N 3.59904 * 120.81701 * 359.41602 * 3 1 2 25 25 H 1.09005 * 109.46590 * 300.00060 * 1 2 3 26 26 H 1.09000 * 109.47392 * 59.99382 * 1 2 3 27 27 H 1.08996 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46898 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47371 * 299.99757 * 3 2 1 30 30 H 1.08997 * 109.47214 * 60.00512 * 3 2 1 31 31 H 1.08991 * 109.47471 * 299.99909 * 4 2 1 32 32 H 1.09002 * 109.46807 * 60.00557 * 4 2 1 33 33 H 1.09008 * 109.46923 * 179.97438 * 4 2 1 34 34 H 1.08001 * 124.61689 * 359.96605 * 6 5 2 35 35 H 0.96991 * 120.00578 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47053 * 299.99282 * 12 10 9 37 37 H 1.08999 * 109.47629 * 59.99830 * 12 10 9 38 38 H 0.97008 * 119.99776 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.2324 -1.2397 2.1461 7 16 2.1653 -1.9832 3.4329 8 6 3.6473 -1.5613 2.7045 9 7 4.8975 -1.8623 3.2271 10 6 4.9971 -2.5351 4.3908 11 8 3.9946 -2.8771 4.9814 12 6 6.3544 -2.8613 4.9585 13 16 6.1563 -3.7629 6.5155 14 6 7.8476 -4.0089 6.9440 15 1 8.6282 -3.6339 6.2986 16 6 8.1767 -4.6837 8.1114 17 7 9.4401 -4.8670 8.4317 18 14 6.8265 -5.3317 9.2279 19 1 6.4706 -6.7153 8.8227 20 1 7.3057 -5.3354 10.6334 21 1 5.6298 -4.4596 9.1152 22 6 3.4357 -0.8844 1.5325 23 6 4.4919 -0.4006 0.6954 24 7 5.3299 -0.0164 0.0315 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.1534 -1.2162 2.1056 35 1 5.6993 -1.5885 2.7550 36 1 6.9061 -3.4786 4.2494 37 1 6.9039 -1.9377 5.1404 38 1 9.6701 -5.3390 9.2474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410933067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:44 Heat of formation + Delta-G solvation = 9.899610 kcal Electronic energy + Delta-G solvation = -21740.033257 eV Core-core repulsion = 18414.188928 eV Total energy + Delta-G solvation = -3325.844329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48592 -39.43859 -36.62056 -35.91648 -33.94743 -32.55368 -30.51082 -28.95014 -27.52718 -27.16666 -25.75515 -24.77129 -22.18021 -21.76700 -19.39306 -18.56903 -17.91936 -17.35136 -16.24841 -15.91010 -15.61932 -15.23989 -15.09256 -14.64505 -14.27978 -14.23941 -14.01782 -13.91528 -13.22688 -13.08181 -13.01114 -12.90756 -12.62540 -12.55149 -12.36682 -12.24707 -11.92082 -11.65318 -11.39973 -11.36558 -11.10847 -11.01173 -10.95604 -10.83033 -10.75565 -9.99429 -9.84008 -9.11696 -8.70821 -8.46879 -8.30007 -7.09228 -6.39449 -4.14455 0.56206 1.10495 1.75976 1.83124 2.34142 2.42160 2.57364 2.95967 3.24509 3.33898 3.39835 3.43054 3.96272 4.21496 4.32946 4.42874 4.50222 4.68617 4.89510 4.92155 4.99296 5.06300 5.21780 5.30929 5.34045 5.45465 5.47986 5.56452 5.60380 5.62637 5.73870 5.76504 5.86237 5.90240 6.01346 6.04578 6.20497 6.77752 7.40267 7.71059 7.83101 8.31086 9.05416 10.69586 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.002772 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.663950 B =10097.937754 C =10863.237630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.011 4.011 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.027 4.027 6 C -0.291 4.291 7 S 0.324 5.676 8 C 0.075 3.925 9 N -0.636 5.636 10 C 0.526 3.474 11 O -0.475 6.475 12 C -0.124 4.124 13 S -0.131 6.131 14 C -0.526 4.526 15 H 0.090 0.910 16 C 0.097 3.903 17 N -0.876 5.876 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.235 1.235 22 C -0.133 4.133 23 C 0.282 3.718 24 N -0.432 5.432 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.172 0.828 35 H 0.420 0.580 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 9.213 -15.792 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.039 4.039 6 C -0.427 4.427 7 S 0.587 5.413 8 C -0.148 4.148 9 N -0.280 5.280 10 C 0.314 3.686 11 O -0.348 6.348 12 C -0.275 4.275 13 S 0.095 5.905 14 C -0.673 4.673 15 H 0.108 0.892 16 C -0.112 4.112 17 N -0.512 5.512 18 Si 0.681 3.319 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.159 1.159 22 C -0.154 4.154 23 C -0.032 4.032 24 N -0.109 5.109 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.257 0.743 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.040 8.345 -14.289 25.226 hybrid contribution 1.574 0.801 -1.447 2.283 sum -17.466 9.146 -15.736 25.226 Atomic orbital electron populations 1.21916 0.93456 1.02282 1.02206 1.19260 0.95787 0.94733 0.91514 1.21908 1.01316 0.94551 1.02094 1.21907 1.01314 1.00500 0.96145 1.19195 0.88736 0.99135 0.96809 1.25870 1.04736 1.10062 1.02009 1.84552 0.87323 1.51192 1.18185 1.22133 0.94222 1.01112 0.97286 1.43151 1.05839 1.55345 1.23694 1.20907 0.92827 0.76081 0.78831 1.90637 1.37492 1.49443 1.57180 1.23273 0.94400 1.05888 1.03892 1.84802 1.13497 1.72094 1.20061 1.22263 0.89177 1.43664 1.12224 0.89169 1.24711 0.95636 0.94249 0.96628 1.69930 1.16348 1.39888 1.25035 0.86746 0.83288 0.81288 0.80577 1.19089 1.19774 1.15885 1.15728 0.90131 1.13786 0.95764 1.24845 0.92423 0.92959 0.93015 1.81291 1.09725 1.10535 1.09383 0.92019 0.92174 0.92014 0.92687 0.92157 0.92081 0.92081 0.92158 0.92688 0.81112 0.74270 0.87457 0.87411 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 7.26 37.16 0.27 -0.58 16 2 C -0.01 -0.08 0.76 -155.66 -0.12 -0.20 16 3 C -0.14 -1.17 8.31 37.16 0.31 -0.86 16 4 C -0.14 -1.16 8.31 37.16 0.31 -0.86 16 5 C -0.03 -0.25 4.72 -104.02 -0.49 -0.75 16 6 C -0.29 -2.51 9.97 28.83 0.29 -2.23 16 7 S 0.32 3.56 19.96 -107.50 -2.15 1.41 16 8 C 0.08 0.89 6.98 -14.85 -0.10 0.79 16 9 N -0.64 -7.84 5.37 -11.61 -0.06 -7.90 16 10 C 0.53 8.09 7.81 -10.98 -0.09 8.01 16 11 O -0.47 -8.36 13.29 5.56 0.07 -8.29 16 12 C -0.12 -2.13 6.16 36.01 0.22 -1.91 16 13 S -0.13 -3.03 18.55 -107.50 -1.99 -5.03 16 14 C -0.53 -14.37 10.04 30.94 0.31 -14.06 16 15 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 16 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 17 N -0.88 -25.61 13.97 55.49 0.78 -24.84 16 18 Si 0.86 20.73 27.74 -169.99 -4.71 16.01 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.23 -5.60 6.74 56.52 0.38 -5.22 16 22 C -0.13 -1.48 5.72 -105.92 -0.61 -2.09 16 23 C 0.28 3.44 10.67 -22.47 -0.24 3.20 16 24 N -0.43 -5.89 18.50 41.84 0.77 -5.12 16 25 H 0.06 0.34 7.74 -51.93 -0.40 -0.06 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 7.74 -51.93 -0.40 -0.06 16 28 H 0.05 0.55 6.08 -51.93 -0.32 0.23 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.55 6.08 -51.92 -0.32 0.23 16 34 H 0.17 1.07 6.70 -52.49 -0.35 0.72 16 35 H 0.42 4.38 8.15 -40.82 -0.33 4.05 16 36 H 0.11 1.70 8.14 -51.91 -0.42 1.28 16 37 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -30.95 346.34 -6.76 -37.71 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.66 Total: -0.28 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.03 Total: -8.90 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 1.49 Total: -37.86 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.01 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -4.14 Total: -3.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.95 -6.76 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410933067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.611 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds