Wall clock time and date at job start Tue Mar 31 2020 13:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46952 * 2 1 4 4 C 1.53000 * 109.47012 * 240.00011 * 2 1 3 5 5 C 1.50700 * 109.47359 * 120.00065 * 2 1 3 6 6 C 1.32613 * 123.42259 * 0.02562 * 5 2 1 7 7 S 1.75469 * 110.77747 * 179.97438 * 6 5 2 8 8 C 1.70440 * 92.52283 * 0.02562 * 7 6 5 9 9 N 1.38802 * 124.64996 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99508 * 0.02562 * 9 8 7 11 11 O 1.21280 * 120.00459 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99473 * 180.02562 * 10 9 8 13 13 S 1.81007 * 109.46861 * 180.02562 * 12 10 9 14 14 C 1.76200 * 100.00045 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99805 * 0.02562 * 14 13 12 16 16 C 1.38799 * 120.00100 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99766 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99857 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47070 * 89.99844 * 18 16 14 20 20 H 1.48500 * 109.46940 * 209.99552 * 18 16 14 21 21 H 1.48503 * 109.47204 * 329.99545 * 18 16 14 22 22 C 1.36985 * 110.70720 * 359.97438 * 8 7 6 23 23 C 1.43201 * 123.58134 * 180.02562 * 22 8 7 24 24 N 3.59904 * 120.81701 * 359.41602 * 3 1 2 25 25 H 1.09005 * 109.46590 * 300.00060 * 1 2 3 26 26 H 1.09000 * 109.47392 * 59.99382 * 1 2 3 27 27 H 1.08996 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46898 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47371 * 299.99757 * 3 2 1 30 30 H 1.08997 * 109.47214 * 60.00512 * 3 2 1 31 31 H 1.08991 * 109.47471 * 299.99909 * 4 2 1 32 32 H 1.09002 * 109.46807 * 60.00557 * 4 2 1 33 33 H 1.09008 * 109.46923 * 179.97438 * 4 2 1 34 34 H 1.08001 * 124.61689 * 359.96605 * 6 5 2 35 35 H 0.96991 * 120.00578 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47053 * 299.99282 * 12 10 9 37 37 H 1.08999 * 109.47629 * 59.99830 * 12 10 9 38 38 H 0.97008 * 119.99776 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.2324 -1.2397 2.1461 7 16 2.1653 -1.9832 3.4329 8 6 3.6473 -1.5613 2.7045 9 7 4.8975 -1.8623 3.2271 10 6 4.9971 -2.5351 4.3908 11 8 3.9946 -2.8771 4.9814 12 6 6.3544 -2.8613 4.9585 13 16 6.1563 -3.7629 6.5155 14 6 7.8476 -4.0089 6.9440 15 1 8.6282 -3.6339 6.2986 16 6 8.1767 -4.6837 8.1114 17 7 9.4401 -4.8670 8.4317 18 14 6.8265 -5.3317 9.2279 19 1 6.4706 -6.7153 8.8227 20 1 7.3057 -5.3354 10.6334 21 1 5.6298 -4.4596 9.1152 22 6 3.4357 -0.8844 1.5325 23 6 4.4919 -0.4006 0.6954 24 7 5.3299 -0.0164 0.0315 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.1534 -1.2162 2.1056 35 1 5.6993 -1.5885 2.7550 36 1 6.9061 -3.4786 4.2494 37 1 6.9039 -1.9377 5.1404 38 1 9.6701 -5.3390 9.2474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410933067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:43 Heat of formation + Delta-G solvation = -8.551347 kcal Electronic energy + Delta-G solvation = -21740.833350 eV Core-core repulsion = 18414.188928 eV Total energy + Delta-G solvation = -3326.644422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58989 -40.29131 -37.53039 -36.93299 -34.84743 -34.68084 -31.71659 -29.86507 -28.15898 -27.94696 -27.71708 -25.68074 -22.99703 -22.84616 -20.35160 -20.06143 -18.92510 -18.74536 -17.23966 -17.12726 -17.09382 -16.52946 -16.01357 -15.80777 -15.47432 -15.33014 -15.01401 -14.88218 -14.76171 -14.21172 -14.08205 -13.98780 -13.44262 -13.39972 -13.35832 -13.14463 -13.01545 -12.86947 -12.75580 -12.51340 -12.46384 -12.08819 -11.88389 -11.81422 -11.62144 -11.57665 -11.17721 -10.91740 -10.61065 -9.32618 -9.21311 -9.01229 -8.52278 -6.24552 -0.38259 0.24073 0.82131 0.96588 1.03485 1.24104 1.33164 1.40813 1.51055 1.61297 1.84960 2.24022 2.39099 2.61382 2.86374 3.02732 3.48974 3.64091 3.88454 4.08246 4.10834 4.17896 4.29099 4.36287 4.51338 4.71322 4.75629 4.79119 4.90485 4.98596 5.06750 5.15969 5.17879 5.27311 5.35983 5.40549 5.57682 5.68959 5.74827 6.11310 6.43245 6.55315 6.92073 8.60071 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.002772 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.663950 B =10097.937754 C =10863.237630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.037 4.037 6 C -0.263 4.263 7 S 0.309 5.691 8 C 0.054 3.946 9 N -0.624 5.624 10 C 0.536 3.464 11 O -0.500 6.500 12 C -0.114 4.114 13 S -0.151 6.151 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.044 3.956 17 N -0.918 5.918 18 Si 0.915 3.085 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.230 1.230 22 C -0.126 4.126 23 C 0.296 3.704 24 N -0.460 5.460 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.202 0.798 35 H 0.428 0.572 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.415 9.765 -16.710 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.012 4.012 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.048 4.048 6 C -0.399 4.399 7 S 0.574 5.426 8 C -0.168 4.168 9 N -0.269 5.269 10 C 0.322 3.678 11 O -0.375 6.375 12 C -0.264 4.264 13 S 0.075 5.925 14 C -0.681 4.681 15 H 0.080 0.920 16 C -0.161 4.161 17 N -0.555 5.555 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.153 1.153 22 C -0.148 4.148 23 C -0.019 4.019 24 N -0.138 5.138 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.219 0.781 35 H 0.267 0.733 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.952 8.918 -15.239 28.172 hybrid contribution 2.443 0.740 -1.364 2.895 sum -19.509 9.658 -16.603 27.378 Atomic orbital electron populations 1.21919 0.91399 1.03148 1.03203 1.19324 0.97355 0.94086 0.90445 1.21912 0.99886 0.95093 1.02948 1.21911 0.99885 1.01069 0.96972 1.19407 0.87824 0.99776 0.97837 1.26095 1.05828 1.07892 1.00038 1.84639 0.87404 1.51349 1.19237 1.22232 0.94059 1.02541 0.97952 1.42784 1.06716 1.54636 1.22738 1.20366 0.91485 0.76409 0.79512 1.90642 1.37828 1.50760 1.58221 1.23220 0.96325 1.05926 1.00970 1.84590 1.10233 1.73488 1.24155 1.22461 0.91028 1.42865 1.11749 0.91989 1.25608 0.97723 0.94616 0.98202 1.70023 1.18311 1.41203 1.25990 0.85859 0.80687 0.80760 0.79038 1.18591 1.18671 1.15324 1.15940 0.90790 1.12951 0.95108 1.24975 0.92075 0.92294 0.92515 1.81295 1.10685 1.11466 1.10319 0.91193 0.91155 0.91187 0.94873 0.90913 0.91668 0.91668 0.90913 0.94874 0.78120 0.73309 0.86016 0.85972 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.26 71.98 0.52 -0.63 16 2 C -0.01 -0.13 0.76 -52.93 -0.04 -0.17 16 3 C -0.14 -2.05 8.31 71.98 0.60 -1.45 16 4 C -0.14 -2.05 8.31 71.98 0.60 -1.45 16 5 C -0.04 -0.61 4.72 -19.40 -0.09 -0.71 16 6 C -0.26 -3.73 9.97 66.66 0.66 -3.06 16 7 S 0.31 6.23 19.96 -56.49 -1.13 5.10 16 8 C 0.05 1.20 6.98 83.29 0.58 1.78 16 9 N -0.62 -14.68 5.37 -309.04 -1.66 -16.34 16 10 C 0.54 15.91 7.81 87.66 0.68 16.59 16 11 O -0.50 -17.11 13.29 -3.03 -0.04 -17.15 16 12 C -0.11 -3.82 6.16 71.24 0.44 -3.38 16 13 S -0.15 -6.96 18.55 -56.49 -1.05 -8.01 16 14 C -0.53 -29.60 10.04 67.95 0.68 -28.92 16 15 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 16 C 0.04 2.50 5.50 84.86 0.47 2.96 16 17 N -0.92 -54.64 13.97 21.65 0.30 -54.34 16 18 Si 0.91 42.79 27.74 68.60 1.90 44.70 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.23 -10.46 6.74 99.48 0.67 -9.79 16 22 C -0.13 -2.63 5.72 -20.71 -0.12 -2.75 16 23 C 0.30 7.00 10.67 88.33 0.94 7.94 16 24 N -0.46 -12.43 18.50 19.00 0.35 -12.08 16 25 H 0.07 0.48 7.74 -2.38 -0.02 0.47 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.48 7.74 -2.39 -0.02 0.47 16 28 H 0.03 0.62 6.08 -2.39 -0.01 0.61 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.03 0.62 6.08 -2.38 -0.01 0.61 16 34 H 0.20 1.62 6.70 -2.91 -0.02 1.60 16 35 H 0.43 8.49 8.15 -92.71 -0.76 7.74 16 36 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 38 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -67.28 346.34 4.92 -62.35 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.31 Total: 8.99 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.93 Total: -13.23 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -1.01 Total: -82.76 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.04 Total: -17.15 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.90 Total: 44.70 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.18 Total: -2.90 kcal Total: -67.28 4.92 -62.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410933067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.802 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds