Wall clock time and date at job start Tue Mar 31 2020 14:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34712 * 117.00173 * 2 1 4 4 O 1.21465 * 119.99786 * 0.02562 * 3 2 1 5 5 C 1.47739 * 120.00078 * 179.97438 * 3 2 1 6 6 C 1.39742 * 120.07352 * 180.02562 * 5 3 2 7 7 C 1.38077 * 120.14711 * 180.02562 * 6 5 3 8 8 C 1.50706 * 119.84423 * 179.97438 * 7 6 5 9 9 S 1.81408 * 109.46846 * 90.00480 * 8 7 6 10 10 C 1.81394 * 102.99810 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47203 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99886 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99769 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47478 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46947 * 120.00423 * 15 13 11 18 18 H 1.48498 * 109.46978 * 239.99694 * 15 13 11 19 19 C 1.38069 * 120.30880 * 0.23699 * 7 6 5 20 20 C 1.39738 * 120.15107 * 359.48899 * 19 7 6 21 21 C 1.47738 * 120.08089 * 180.25977 * 20 19 7 22 22 O 1.21468 * 119.99711 * 0.26922 * 21 20 19 23 23 O 1.34707 * 120.00458 * 180.27353 * 21 20 19 24 24 C 1.45202 * 117.00069 * 179.97438 * 23 21 20 25 25 C 1.39356 * 120.07879 * 0.02737 * 5 3 2 26 26 H 1.09008 * 109.47427 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47417 * 299.99923 * 1 2 3 28 28 H 1.09004 * 109.47617 * 59.99696 * 1 2 3 29 29 H 1.07995 * 119.92987 * 0.02562 * 6 5 3 30 30 H 1.09000 * 109.47318 * 209.99794 * 8 7 6 31 31 H 1.09000 * 109.47161 * 330.00424 * 8 7 6 32 32 H 1.09005 * 109.47237 * 299.99421 * 10 9 8 33 33 H 1.08997 * 109.47436 * 60.00073 * 10 9 8 34 34 H 0.97000 * 120.00020 * 180.02562 * 14 13 11 35 35 H 1.08004 * 119.92778 * 179.71878 * 19 7 6 36 36 H 1.08999 * 109.46872 * 299.99491 * 24 23 21 37 37 H 1.08993 * 109.47545 * 60.00001 * 24 23 21 38 38 H 1.09000 * 109.46849 * 179.97438 * 24 23 21 39 39 H 1.08000 * 120.14858 * 359.97438 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1749 2.5218 0.0011 7 6 5.5537 2.5959 0.0011 8 6 6.2325 3.9414 0.0011 9 16 6.5050 4.4811 1.7115 10 6 7.3161 6.0907 1.5071 11 6 7.6126 6.6795 2.8622 12 1 7.3398 6.1396 3.7570 13 6 8.2319 7.9075 2.9598 14 7 8.5636 8.5651 1.8703 15 14 8.5986 8.6376 4.6397 16 1 8.1289 7.7070 5.6973 17 1 10.0622 8.8470 4.7796 18 1 7.8971 9.9392 4.7775 19 6 6.3134 1.4430 -0.0043 20 6 5.6906 0.1920 0.0009 21 6 6.5050 -1.0406 0.0008 22 8 7.7175 -0.9674 0.0012 23 8 5.9031 -2.2457 0.0002 24 6 6.7659 -3.4136 -0.0004 25 6 4.2995 0.1099 0.0005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.5868 3.4276 0.0015 30 1 7.1908 3.8649 -0.5127 31 1 5.6016 4.6667 -0.5126 32 1 8.2473 5.9609 0.9554 33 1 6.6577 6.7620 0.9558 34 1 8.9997 9.4289 1.9390 35 1 7.3914 1.5080 -0.0089 36 1 7.3949 -3.4000 -0.8904 37 1 7.3951 -3.4010 0.8895 38 1 6.1552 -4.3164 -0.0003 39 1 3.8130 -0.8544 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:00 Heat of formation + Delta-G solvation = -153.177917 kcal Electronic energy + Delta-G solvation = -23600.375593 eV Core-core repulsion = 19792.414069 eV Total energy + Delta-G solvation = -3807.961523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02785 -40.49337 -38.98386 -36.71999 -36.57809 -33.37157 -33.16223 -31.95564 -28.62194 -28.25596 -28.13523 -26.98887 -24.61885 -23.87944 -23.07284 -21.10829 -20.63119 -18.15206 -17.90045 -17.19618 -16.65719 -16.54420 -16.49475 -16.46473 -16.28816 -15.38965 -15.36743 -14.64495 -14.33034 -13.89845 -13.87533 -13.54111 -13.52315 -13.00482 -12.98457 -12.47662 -12.43385 -12.41139 -12.23130 -12.04313 -11.88261 -11.80718 -11.07619 -11.07397 -10.93693 -10.90627 -10.71512 -10.67114 -10.25385 -9.61632 -9.41654 -9.05521 -8.79815 -8.63653 -6.76729 -6.21351 -4.25577 0.28689 0.56774 1.88619 2.33613 2.40246 2.51858 2.69557 3.24655 3.31969 3.38164 3.59079 3.76995 4.20987 4.34581 4.45415 4.46097 4.81724 4.82865 4.86592 4.88762 4.91530 4.91594 4.98339 5.06737 5.16153 5.21225 5.27498 5.45743 5.51185 5.83186 5.83815 5.90622 6.00417 6.08118 6.26240 6.39948 7.05950 7.07502 7.47091 7.47447 7.73484 7.98369 8.76535 9.37838 10.89941 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.002914 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.371691 B = 9607.940691 C =11442.727947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.499 6.499 5 C -0.140 4.140 6 C -0.003 4.003 7 C -0.072 4.072 8 C -0.059 4.059 9 S -0.292 6.292 10 C 0.089 3.911 11 C -0.512 4.512 12 H 0.068 0.932 13 C 0.065 3.935 14 N -0.893 5.893 15 Si 0.906 3.094 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.003 4.003 20 C -0.140 4.140 21 C 0.513 3.487 22 O -0.499 6.499 23 O -0.355 6.355 24 C 0.037 3.963 25 C -0.010 4.010 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 -22.730 -7.626 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.387 6.387 5 C -0.141 4.141 6 C -0.023 4.023 7 C -0.073 4.073 8 C -0.206 4.206 9 S -0.063 6.063 10 C -0.058 4.058 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.023 4.023 20 C -0.141 4.141 21 C 0.358 3.642 22 O -0.387 6.387 23 O -0.272 6.272 24 C -0.057 4.057 25 C -0.029 4.029 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.167 0.833 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.490 -22.781 -6.753 26.393 hybrid contribution 0.544 1.079 -0.282 1.241 sum -10.946 -21.702 -7.035 25.303 Atomic orbital electron populations 1.23303 0.75730 1.03820 1.02822 1.86531 1.23740 1.32476 1.84408 1.21026 0.88792 0.81588 0.72838 1.90869 1.66555 1.35922 1.45370 1.18920 0.89299 0.94437 1.11421 1.21473 0.93984 0.97260 0.89592 1.19273 0.92662 0.94455 1.00958 1.22230 1.03082 0.94838 1.00434 1.86927 1.81029 1.31181 1.07207 1.21104 0.96760 0.86530 1.01364 1.20705 1.39850 1.03505 0.91079 0.91398 1.24961 0.95060 0.96353 0.97472 1.69958 1.40766 1.14632 1.27726 0.86294 0.78065 0.79004 0.83297 1.19399 1.20714 1.20710 1.21471 1.01663 0.89575 0.89609 1.18919 0.92887 0.90850 1.11416 1.21025 0.86555 0.83826 0.72839 1.90870 1.14864 1.87615 1.45372 1.86533 1.41222 1.14996 1.84407 1.23302 0.94932 0.84612 1.02822 1.21696 0.92188 0.98811 0.90211 0.87890 0.91638 0.91736 0.83303 0.89132 0.89132 0.94440 0.94443 0.92518 0.83305 0.91727 0.91642 0.87892 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.54 9.81 -40.52 -0.40 -3.93 16 3 C 0.51 6.28 7.90 34.61 0.27 6.55 16 4 O -0.50 -7.35 16.13 -19.24 -0.31 -7.66 16 5 C -0.14 -1.67 5.87 -105.04 -0.62 -2.29 16 6 C 0.00 -0.04 9.24 -39.08 -0.36 -0.40 16 7 C -0.07 -1.00 5.13 -104.74 -0.54 -1.53 16 8 C -0.06 -0.92 6.06 36.01 0.22 -0.71 16 9 S -0.29 -6.17 21.64 -107.50 -2.33 -8.50 16 10 C 0.09 2.27 5.70 36.01 0.21 2.48 16 11 C -0.51 -14.36 9.13 -34.44 -0.31 -14.67 16 12 H 0.07 1.92 7.71 -52.48 -0.40 1.51 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 15 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.00 -0.04 9.23 -39.08 -0.36 -0.40 16 20 C -0.14 -1.67 5.87 -105.04 -0.62 -2.29 16 21 C 0.51 6.28 7.90 34.61 0.27 6.55 16 22 O -0.50 -7.35 16.13 -19.24 -0.31 -7.66 16 23 O -0.35 -3.54 9.81 -40.51 -0.40 -3.93 16 24 C 0.04 0.26 10.56 101.05 1.07 1.32 16 25 C -0.01 -0.11 9.18 -38.75 -0.36 -0.46 16 26 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16 30 H 0.09 1.34 8.08 -51.92 -0.42 0.92 16 31 H 0.09 1.34 8.08 -51.92 -0.42 0.92 16 32 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.15 1.97 7.64 -52.48 -0.40 1.56 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.15 1.34 7.15 -52.49 -0.38 0.97 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.72 365.16 -7.61 -40.34 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.94 Total: -2.63 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.15 Total: -2.80 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -1.42 Total: -23.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -2.33 Total: -8.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.72 -7.61 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.840 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds