Wall clock time and date at job start Tue Mar 31 2020 13:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75350 * 124.29595 * 2 1 4 4 C 1.75750 * 92.18881 * 180.02562 * 3 2 1 5 5 N 1.33861 * 131.29556 * 180.28506 * 4 3 2 6 6 C 1.31256 * 120.98834 * 180.19388 * 5 4 3 7 7 C 1.50706 * 118.91939 * 179.76528 * 6 5 4 8 8 H 1.09005 * 109.46588 * 344.73095 * 7 6 5 9 9 C 1.52997 * 109.46947 * 104.73071 * 7 6 5 10 10 S 1.81399 * 109.47152 * 224.73321 * 7 6 5 11 11 C 1.81405 * 102.99866 * 174.99569 * 10 7 6 12 12 C 1.50693 * 109.46848 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00637 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99824 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99911 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00057 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47014 * 60.00056 * 16 14 12 18 18 H 1.48495 * 109.47162 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47397 * 300.00365 * 16 14 12 20 20 N 1.32136 * 122.16597 * 359.48983 * 6 5 4 21 21 C 1.32268 * 121.21873 * 0.25129 * 20 6 5 22 22 O 1.35441 * 120.51164 * 179.97438 * 21 20 6 23 23 C 1.39818 * 109.61021 * 0.02562 * 4 3 2 24 24 C 1.31867 * 124.29222 * 180.02562 * 2 1 3 25 25 C 1.50702 * 122.59609 * 359.93474 * 24 2 1 26 26 H 1.09005 * 109.47349 * 269.96040 * 1 2 3 27 27 H 1.09000 * 109.47251 * 29.95698 * 1 2 3 28 28 H 1.09001 * 109.47491 * 149.95488 * 1 2 3 29 29 H 1.08996 * 109.47491 * 60.00320 * 9 7 6 30 30 H 1.09002 * 109.46895 * 180.02562 * 9 7 6 31 31 H 1.08995 * 109.47215 * 300.00198 * 9 7 6 32 32 H 1.08990 * 109.47027 * 300.00142 * 11 10 7 33 33 H 1.09007 * 109.46693 * 59.99931 * 11 10 7 34 34 H 0.96999 * 119.99875 * 179.97438 * 15 14 12 35 35 H 0.96703 * 114.00339 * 90.00247 * 22 21 20 36 36 H 1.09000 * 109.47482 * 270.02720 * 25 24 2 37 37 H 1.09007 * 109.46988 * 30.02703 * 25 24 2 38 38 H 1.08994 * 109.47306 * 150.02432 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4951 1.4486 0.0000 4 6 3.9838 0.5145 -0.0008 5 7 5.2666 0.8969 0.0038 6 6 6.2356 0.0116 -0.0017 7 6 7.6634 0.4940 -0.0015 8 1 7.6898 1.5508 -0.2673 9 6 8.2660 0.3031 1.3918 10 16 8.6234 -0.4579 -1.2111 11 6 10.2444 0.3558 -1.1768 12 6 11.1719 -0.3316 -2.1453 13 1 10.8214 -1.1734 -2.7240 14 6 12.4680 0.1149 -2.2936 15 7 12.8948 1.1403 -1.5893 16 14 13.6177 -0.7366 -3.4946 17 1 13.0511 -0.6547 -4.8649 18 1 14.9446 -0.0706 -3.4665 19 1 13.7713 -2.1618 -3.1070 20 7 6.0006 -1.2887 -0.0021 21 6 4.7655 -1.7621 -0.0018 22 8 4.5410 -3.0978 -0.0027 23 6 3.6812 -0.8505 -0.0016 24 6 2.2500 -1.0895 -0.0005 25 6 1.6584 -2.4755 0.0003 26 1 -0.3634 -0.0007 1.0277 27 1 -0.3634 0.8904 -0.5132 28 1 -0.3634 -0.8896 -0.5145 29 1 8.2395 -0.7536 1.6575 30 1 9.2985 0.6524 1.3920 31 1 7.6891 0.8751 2.1185 32 1 10.1318 1.4019 -1.4611 33 1 10.6600 0.2953 -0.1709 34 1 13.8067 1.4542 -1.6933 35 1 4.4763 -3.4864 0.8804 36 1 1.5163 -2.8094 1.0282 37 1 0.6969 -2.4605 -0.5130 38 1 2.3340 -3.1592 -0.5136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:30 Heat of formation + Delta-G solvation = -11.360776 kcal Electronic energy + Delta-G solvation = -21855.562150 eV Core-core repulsion = 18528.795901 eV Total energy + Delta-G solvation = -3326.766248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50586 -38.99554 -38.42082 -35.31615 -35.07550 -34.16424 -32.08434 -30.65028 -30.12256 -27.60412 -26.13070 -25.23098 -24.80824 -23.38028 -20.57301 -20.19277 -19.46564 -18.67323 -18.05948 -17.65048 -17.01031 -16.62604 -16.37560 -15.94137 -15.51099 -15.17777 -15.02709 -14.63765 -14.46279 -14.37543 -14.15810 -13.89615 -13.59400 -13.56850 -13.26861 -13.08419 -12.90823 -12.77073 -12.65318 -12.58950 -12.48129 -11.89509 -11.85537 -11.75614 -11.65077 -11.54550 -10.73570 -10.68077 -10.49815 -9.95431 -9.11721 -8.50309 -8.32729 -6.45651 -0.92079 -0.40208 -0.10176 0.70324 0.71798 1.03860 1.39843 1.43163 1.51783 1.92178 2.08784 2.32237 2.37279 2.61595 3.01698 3.22880 3.32567 3.63278 3.78684 3.92270 4.04494 4.18471 4.36179 4.54764 4.61809 4.69714 4.71023 4.77208 4.82364 4.89661 4.94467 4.95003 5.09826 5.11677 5.23355 5.48609 5.56916 5.59220 5.89358 6.36731 6.60564 6.75408 7.21635 8.79119 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002739 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.750254 B =10218.430844 C =10687.243120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 S 0.183 5.817 4 C 0.066 3.934 5 N -0.507 5.507 6 C 0.375 3.625 7 C 0.006 3.994 8 H 0.103 0.897 9 C -0.127 4.127 10 S -0.268 6.268 11 C 0.092 3.908 12 C -0.538 4.538 13 H 0.059 0.941 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.266 1.266 20 N -0.537 5.537 21 C 0.415 3.585 22 O -0.463 6.463 23 C -0.193 4.193 24 C -0.080 4.080 25 C -0.098 4.098 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.271 0.729 35 H 0.430 0.570 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.024 -4.435 8.212 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.279 4.279 3 S 0.444 5.556 4 C -0.184 4.184 5 N -0.225 5.225 6 C 0.103 3.897 7 C -0.124 4.124 8 H 0.121 0.879 9 C -0.186 4.186 10 S -0.041 6.041 11 C -0.056 4.056 12 C -0.577 4.577 13 H 0.077 0.923 14 C -0.184 4.184 15 N -0.561 5.561 16 Si 0.798 3.202 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.191 1.191 20 N -0.263 5.263 21 C 0.218 3.782 22 O -0.274 6.274 23 C -0.210 4.210 24 C -0.091 4.091 25 C -0.156 4.156 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.294 0.706 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.707 -3.259 7.071 29.744 hybrid contribution 1.295 -0.730 0.530 1.578 sum -27.412 -3.989 7.601 28.724 Atomic orbital electron populations 1.20639 0.83691 1.05084 1.04808 1.24417 1.02191 0.94071 1.07228 1.84185 0.88588 1.06446 1.76370 1.24351 0.97405 0.95796 1.00874 1.67758 0.98454 1.39019 1.17300 1.21749 0.93945 0.83424 0.90600 1.21713 0.88843 1.01771 1.00091 0.87867 1.21915 1.00982 1.03475 0.92250 1.86863 1.13681 1.49001 1.54544 1.20827 0.88933 0.96232 0.99599 1.20912 0.96533 1.16349 1.23859 0.92255 1.25874 0.99151 0.95543 0.97805 1.70043 1.18365 1.26037 1.41669 0.85350 0.77306 0.78771 0.78753 1.19337 1.19865 1.19076 1.67647 1.24085 1.17126 1.17478 1.19401 0.85481 0.85565 0.87736 1.84658 1.92122 1.14549 1.36073 1.20989 0.96596 0.93601 1.09766 1.19504 0.87653 0.98983 1.02962 1.20754 1.01597 0.89149 1.04112 0.88309 0.89919 0.87978 0.91052 0.91566 0.90217 0.96847 0.95590 0.92003 0.70576 0.88888 0.88809 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 9.98 71.24 0.71 0.19 16 2 C -0.16 -2.43 6.38 24.87 0.16 -2.27 16 3 S 0.18 3.72 23.20 -56.49 -1.31 2.41 16 4 C 0.07 1.94 7.70 84.77 0.65 2.59 16 5 N -0.51 -17.86 10.34 -183.83 -1.90 -19.76 16 6 C 0.37 13.98 6.43 138.81 0.89 14.87 16 7 C 0.01 0.25 3.18 29.85 0.10 0.35 16 8 H 0.10 4.09 8.11 -2.39 -0.02 4.08 16 9 C -0.13 -4.37 9.08 71.98 0.65 -3.72 16 10 S -0.27 -12.89 20.60 -56.49 -1.16 -14.05 16 11 C 0.09 5.06 5.39 71.23 0.38 5.44 16 12 C -0.54 -31.78 9.13 25.60 0.23 -31.55 16 13 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 14 C 0.02 1.00 5.46 84.66 0.46 1.46 16 15 N -0.92 -55.04 13.29 21.45 0.28 -54.75 16 16 Si 0.98 44.75 29.54 68.60 2.03 46.77 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 N -0.54 -19.28 9.73 -299.69 -2.92 -22.19 16 21 C 0.41 11.86 7.90 85.47 0.68 12.53 16 22 O -0.46 -9.74 11.50 -87.38 -1.01 -10.74 16 23 C -0.19 -5.01 6.05 -20.29 -0.12 -5.13 16 24 C -0.08 -1.40 5.96 -18.92 -0.11 -1.51 16 25 C -0.10 -1.00 9.46 71.24 0.67 -0.32 16 26 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 27 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.10 0.32 6.51 -2.39 -0.02 0.30 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.42 6.92 -2.39 -0.02 2.40 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.01 0.77 8.14 -2.40 -0.02 0.75 16 33 H 0.03 1.47 7.14 -2.39 -0.02 1.45 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.43 4.15 9.06 -74.06 -0.67 3.48 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.56 6.48 -2.38 -0.02 0.55 16 38 H 0.07 0.93 6.49 -2.39 -0.02 0.92 16 Total: -1.00 -75.13 347.20 -0.19 -75.32 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.44 Total: 4.06 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.36 Total: -7.07 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -4.53 Total: -96.70 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.01 Total: -10.74 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -2.47 Total: -11.63 kcal Total: -75.13 -0.19 -75.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.958 kcal (2) G-P(sol) polarization free energy of solvation -75.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds